BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42690.2
Length=2102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331132 jgi|Araly1|331132|fgenesh1_pm.C_scaffold_8000475 2296 0.0
> Ahg331132 jgi|Araly1|331132|fgenesh1_pm.C_scaffold_8000475
Length=1626
Score = 2296 bits (1243), Expect = 0.0
Identities = 1494/1616 (92%), Gaps = 13/1616 (1%)
Strand=Plus/Plus
Query 293 AGCAGTAGCAGTAGTAATGGTAGTAGTAGTTATACAAGATGCGTTAAAACTCCATCATCT 352
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 16 AGCAGTAGCAGTAGTAATAGTAGTAGTAGCTATACAAGATGCGTTAAAACTCCATCATCT 75
Query 353 ACAAATAC-TAACATTGGGAAGAAACTGAAAGGTTGTGAAAATGGTGTTGTAAATCGAAA 411
||| ||| || ||||||||||| |||||| | ||||||||||||||| ||| |||||
Sbjct 76 GCAATTACGGAA-ATTGGGAAGAATGTGAAAGCTGGTGAAAATGGTGTTGGAAACCGAAA 134
Query 412 GGCGTTAAATCGAGAGAAGATAATTACTCTGCAAGAAGATGTTGAAAAGTTGAGAAAGAA 471
||| ||||||||||||||||||||| |||||||| |||||||||| ||| | || |||||
Sbjct 135 GGCCTTAAATCGAGAGAAGATAATTGCTCTGCAACAAGATGTTGAGAAGCTAAGGAAGAA 194
Query 472 GCTGAGACTTGAAGAAAACATTCACCGAGCAATGGAAAGAGCATTTAGTAGGCCTCTTGG 531
||| ||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||| ||
Sbjct 195 GCTTAGACTTGAAGAGAACATTCGCCGAGCAATGGAAAGAGCATTTAATAGACCTCTCGG 254
Query 532 AGCACTTCCCCGTCTTCCTCCGTTTCTACCTCCATCGGTTTTGGAGTTACTTGCGGAAGT 591
|||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 255 AGCACTTCCCCGCCTTCCTCCGTTTCTCCCTCCATCGATTTTGGAGTTACTTGCGGAAGT 314
Query 592 GGCTGTTTTGGAAGAGGAATTGGTTCGGTTAGAAGAACATATTGTGCATTGTAGACAAGA 651
||||||| |||| || ||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct 315 GGCTGTTATGGAGGAAGAAATGGTTCGGTTAGAAGAATATATTGTCCATTGTAGACAAGA 374
Query 652 ATTGTATCAAGAAGCAGTTTTTACATCTTCATCGATAGAGAATTTAAAATGCTCTCCTGC 711
||||||||||||| ||| ||||||||||||||| |||| ||| |||||||||||| |||
Sbjct 375 ATTGTATCAAGAAACAGCTTTTACATCTTCATCCATAGCGAACTTAAAATGCTCTGCTG- 433
Query 712 ATTT-CCTAAGCATTGGCAGACCAAATCCAAGTCAGCTTCCACTAGTGCTAGAGAATCAG 770
|||| |||||| ||||||||| |||||| ||||||||| ||| || |||||||||||| |
Sbjct 434 ATTTGCCTAAGAATTGGCAGAGCAAATCTAAGTCAGCTGCCAGTAATGCTAGAGAATCTG 493
Query 771 AATCACCTC-TTTCACGGGCACCTTGTTCTGTTTCAGTGTGTAGGAAGGGTAAAGAAAAC 829
||||||||| ||| |||| ||| |||||||||||| | || ||| ||||||||| |||
Sbjct 494 AATCACCTCGTTT-GCGGGAACCGCGTTCTGTTTCAGAGAGTCGGAGGGGTAAAGAGAAC 552
Query 830 AAGTTGAGTGCTACTTCTATCAAAACACCGATGAAGAAAACGACTA--TT-GCTCATACA 886
|||||||||||||||||||||||||| ||||| ||||||| ||||| || |||||||||
Sbjct 553 AAGTTGAGTGCTACTTCTATCAAAACGCCGATAAAGAAAATGACTATTTTGGCTCATACA 612
Query 887 CAACTGAATAAGAGTTTAGAAGCTCAAAAACTAAAGCAGGATAGTCATAGATGTCGCAAA 946
||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 613 CAACTTAATAAGAGTTTAGAAGCTCAGAAACTTGAGCAGGAAAGTCATAGATGTCGCAAA 672
Query 947 ACAAATGCAGAGCGGAGCTCTCATGGTGGCGGTGATGAACCAAATAAAATTTCCGAGGAT 1006
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 673 ACAAATGCAGAGCGGAGCTCTCATGGTGGGGGTGATGACCCAAATAAAATTTCCGAGGAT 732
Query 1007 TTGGTTAAATGTCTGTCTAACATTTTCATGAGAATGAGCTCAATAAAGAGATCCATGGTT 1066
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 733 TTGGTTAAATGTTTGTCTAACATTTTCATGAGAATGAGCTCAATAAAGAGATCCGCGGTT 792
Query 1067 ACAAAATCTCAAGAAAACGATAAAGATACGGCATTCAGGGATCCTTATGGAATTTGCTCT 1126
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 793 ACGAAATCTCAAGAAAACGATAAAGATACGGCATTCAGGGACCCTTATGGAATTTGCTCC 852
Query 1127 AGTTTTAGAAGAAGGGATATTGGTCGATATAAGAATTTCAGTGATGTTGAAGAAGCCTCA 1186
|| ||||| ||||| |||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 853 AGCTTTAGTAGAAGAGATATTGGTCCTTATAAGAATTTCAGTGATGTTGAAGCAGCTTCA 912
Query 1187 CTTAACCAAAACAGAACGTCAAGTTCCTCTTTGTTTCTCATCCGCCAACTGAAACGAT-T 1245
| || ||||| |||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 913 GTAAATCAAAATAGAACGTCAAGTTCCTCTTTGTTTCTCATCCGTCAACTGAAACG-TCT 971
Query 1246 GCTTGGAAGACTTTCTTTAGTCAACATGCAGAAACTTAATCAACAAGAGAAGTTAGCTTT 1305
|||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 972 GCTTGGAAAACTTTCTTCAGTCAACTTGCAGAAACTTAATCAACAAGAGAAGTTAGCTTT 1031
Query 1306 CTGGATAAACATTTATAACAGCTGCATGATGAATGGTTTCCTTGAACATGGAATACCGGA 1365
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1032 CTGGATAAACATTTATAACAGCTGCATGATGAATTGTTTCCTTGAACATGGAATACCGGA 1091
Query 1366 GAGCCCTGATATGGTGACATTAATGCAAAAGGCGACTATAAATGTAGGAGGCCACTTTCT 1425
||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1092 GAGCCCTGATATGGTGACACTAACGCAAAAGGCGACTATAAATGTGGGAGGCCACTTTCT 1151
Query 1426 CAATGCAATCACGATCGAACACTTCATCCTCCGCTTACCGCATCACTCAAAATATATTTC 1485
|||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1152 CAATGCAAGCACAATCGAACACTTCATCCTCCGCTTACCGTATCACTCAAAATATATTTC 1211
Query 1486 TCCAAAGGGTTCAAAGAAAAATGAAATGGCAGTGAGAAGTAAATTTGGATTGGAATTGTC 1545
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1212 TCCAAAGGGATCAAAGAAAAATGAAATGGCAGTGAGTAGTAAATTTGGATTGGAATTGTC 1271
Query 1546 AGAGCCACTTGTAACATTTGCTCTCTCATGTGGTAGCTGGTCCTCACCCGCGGTACGGGT 1605
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1272 AGAGCCACTTGTAACATTTGCTCTCTCATGTGGTACCTGGTCCTCACCCGCGGTAAGGGT 1331
Query 1606 GTACACTGCGAGTAAAGTAGAGGAGGAGTTGGAGGTGGCGAAAAGAGAGTACCTAGAAGC 1665
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1332 GTACACTGCGAGTAAAGTAGAGGAGGAGTTGGAGGTGGCAAAAAGAGAGTACCTAGAAGC 1391
Query 1666 ATCGGTGGGGATATCGGTGGTGAAAATAGGGATACC-AAAGCTGATGGATTGGTATAGTC 1724
||| ||||||||||| |||| |||||| |||||||| ||| |||||||||||||||||||
Sbjct 1392 ATCCGTGGGGATATCCGTGGCGAAAATGGGGATACCGAAA-CTGATGGATTGGTATAGTC 1450
Query 1725 ATGACTTTGCAAAGGACATTGAATCATTGCTTGATTGGATTTTCCTTCAGTTGCCTACTG 1784
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1451 ATGACTTTGCAAAGGACATTGAATCATTACTTGATTGGATTTGCCTTCAGTTGCCTACTG 1510
Query 1785 AGTTGGGTAAAGATGCTCTCAACTGTGTTGAACAAGGGATGTCTCAGTCCCCTTCTTCTA 1844
||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1511 AGTTGGGGAAAGATGCTCTCAACTGTGTTCAACAAGGGATGTCTCAGCCCCCTTCTTCTA 1570
Query 1845 CTCTTGTCCATATTATCCCTTATGACTTCACTTTTAGATATCTTTTTTCCATCTGA 1900
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1571 CTCTTGTCCATATTATCCCTTATGACTTCACTTTTAGATACCTTTTTTCGATCTGA 1626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79075348620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5