BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42760.2
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331125 jgi|Araly1|331125|fgenesh1_pm.C_scaffold_8000468 1557 0.0
> Ahg331125 jgi|Araly1|331125|fgenesh1_pm.C_scaffold_8000468
Length=1047
Score = 1557 bits (843), Expect = 0.0
Identities = 939/987 (95%), Gaps = 0/987 (0%)
Strand=Plus/Plus
Query 158 ATGTCTGAAATAGAAAAGCAAAAGCCGGAAGAAGAAGAATCATCCACGACATGGCCGGAT 217
||||| |||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 1 ATGTCCGAAATAGAAAAGCAAAAGCCGGAAGAGGAAGAATCATCGAGGACATGGCCGGAT 60
Query 218 ATCGAAGAAGAACTCGTGCTTCCCGATGTGTTACGTAGTGAAGGCGTGAAGAAACTGCAT 277
|||||||||||||||||| | |||||||| |||| ||||||||| ||||||||||| |||
Sbjct 61 ATCGAAGAAGAACTCGTGATACCCGATGTTTTACATAGTGAAGGTGTGAAGAAACTTCAT 120
Query 278 ATGAGTATTCAAAGTGAGTGGGATTACCTTCAGAAGTCTGCTTGTCAAACAGCTGCAGGA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGAGTATTCAAAGTGAGTGGGATTACCTTCAGAAGTCTGCTTGTCAAACAGCTGCAGGA 180
Query 338 AGAGCTTTGTGGAAACATGTTATTCATGATCCGCTTGCTCATTTGTTTGCTGGAGAGACA 397
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AGAGCTTTGTGGAAACATGTTATTCATGATCCGCTCGCTCATTTGTTTGCTGGAGAGACA 240
Query 398 CATTTGAGAAACCTACACACAAAGATTCAGACTGACCGTCTCAACAATGCTCGAGAGGTT 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 CATTTGAGAAACCTACACACAAAGATTCAGACTGACCGTCTCAACAATGCTCGAGAGATT 300
Query 458 TCTGGTGTGATCCTAGCCGTTCGAACTCTCTGGTTTGACACAAGGATTCAAGCTGCTCTG 517
|| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 TCCGGTGTGATTCTAGCCGTTCGAACTCTCTGGTTTGATACAAGGATTCAAGCTGCTCTG 360
Query 518 GAGTCTTTCCACGGCGATGCAGCACAGGTTGTTCTACTTGGTGCAGGAATGGATGCAAGA 577
||||||||| | | |||||||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 361 GAGTCTTTCGAAAGTGATGCAGCTCAGGTTGTGCTACTCGGTGCAGGAATGGATGCGAGA 420
Query 578 TCATACAGACTAAACTGCTTGAACAAAAGTGACGTATTCGAAGTGGATTTTCAAGATGTT 637
|||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 421 TCATACCGACTAAACTGCTTGAACAAAAGCGACGTATTTGAAGTGGATTTTCAAGATGTT 480
Query 638 TTGGAAACCAAAGCGAGCCTAGTTCAAGCTGCAGTAAACTCTAGAGATGAGCTTAGGATG 697
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 481 TTGGAAACAAAAGCGAGCCTAGTTCAAGCTGCAGTAAACTCTAGAGATGATCTTCGGATG 540
Query 698 ACAGCGAAATCACTAGTCAGAGTAGCAATTGATATCAGAGACAACGATTGGTTTGAACAG 757
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACAGCGAAATCACTAGTCAGAGTAGCAATTGATATCAGAGACAACGATTGGTTTGAACAC 600
Query 758 CTTAAAAAATCAGGTTTTTTGCCAGAGATTAACACGGTATGGGTTCTCGAAGGTATTCTC 817
||||| ||||| |||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 601 CTTAAGAAATCGGGTTTTCTGCCAGAGATTAACACCGTATGGGTTCTTGAAGGTATTCTT 660
Query 818 TATTACCTGTCTCACACAGAGGCAATGCAAGTACTAAACCTCATAGCTGAGAAGTGTGGA 877
||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |
Sbjct 661 TATTACCTGTCTCACACAGAGGCAATGCAAGTACTGAAGCTCATAGCTGATAAGTGTGCA 720
Query 878 CTAACCAGCACAGTTCTCTTGGCGGATTTCATGAACAAACCATCAGCTACACTTCCAAAC 937
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 721 CTAACCAGCACAGTTCTCTTGGCGGATTTCATGAACAAACCGTCTGCTACACTGCCAAAC 780
Query 938 TCTGTGTTCCACTTTTACAGTGACTGGCCTGATCAGCTCTTACCAACTTTGGGATTCTCT 997
|||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 781 TCTGTGTTCCACTTCTACAGTGACTGGCCTGATCAGCTCTTACCATCATTGGGATTCTCT 840
Query 998 CATGTCAAGCTTTCACAAATAGGTGATCCAGATGCGAATTTCGGTCTGCTCCACGATCCA 1057
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CATGTCAAGCTTTCACAGATAGGTGATCCAGATGCGAATTTCGGTCTGCTCCACGATCCA 900
Query 1058 CGGAATCTCTTCAACAAACTTCTCCGCCTGCCAAGGACTGCACAAATCCATCCAGATGAT 1117
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 CGGAATCTCTTCAACAAACTTCTTCGCCTGCCAAGGACTGCACAAATCCATCCAGATGAT 960
Query 1118 GGAAAACCATGCTGCCGTTTGTATTTG 1144
|||||||||||||||||||||||||||
Sbjct 961 GGAAAACCATGCTGCCGTTTGTATTTG 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5