BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42765.1
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494744 jgi|Araly1|494744|fgenesh2_kg.8__560__AT5G42765.1 1216 0.0
> Ahg494744 jgi|Araly1|494744|fgenesh2_kg.8__560__AT5G42765.1
Length=840
Score = 1216 bits (658), Expect = 0.0
Identities = 789/851 (93%), Gaps = 14/851 (2%)
Strand=Plus/Plus
Query 32 TGTTAAGCCATGGCTCGTCTTATCCCAATTTCTCAACCTTTCTTCTCTTCAAACACTAAA 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTTAAGCCATGGCTCGTCTTATCCCAATTTCTCAACCTTTCTTCTCTTCAAACACTAAA 60
Query 92 CCTCCACCACCACCACCAATCGCCGCCGCACAAATCTCCGACCACCTGCCACAG-ATTAt 150
||| || ||||||||||||| |||||||||||||||||||||||| || | | |||||
Sbjct 61 CCT-CA--ACCACCACCAATCACCGCCGCACAAATCTCCGACCACCCACCGC-GCATTAT 116
Query 151 ctctcgccgagacgccaccgttcttctctcctccgccacttctcttctcctcactctctc 210
|||||| ||||| |||| ||||||||||||||||| |||||||||||||| | |||||
Sbjct 117 CTCTCGTCGAGA---CACCTTTCTTCTCTCCTCCGCCGCTTCTCTTCTCCTCTCACTCTC 173
Query 211 cCCCACCAATCCCGCTTTCGCCTTCTCCTTAGGAATCTCAGGACCTAAAGAGTGGCTTAA 270
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCCAACCAATCCCGCTTTTGCCTTCTCCTTAGGAATCTCAGGACCTAAAGAGTGGCTTAA 233
Query 271 AGATCAGAAGAAGAAGTCTTCAAGATTCTTACTTGCTCCCATTGATGCAACTCGTCAAGC 330
||| |||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 234 AGAACAGAAGAAGAAGTCGTCAAGATTCTTACTCGCTCCCATTGATGCATCTCGTGAAGC 293
Query 331 TCTTCAATCTGCTTATCTTTCGTTAACTAGTGAATCTGATTATACAGAGAAAGATTTGGA 390
||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 294 TCTCCGATCTGCTTACCTTTCGTTAACTAGTGAATCTGATTATACGGAGAAAGATTTGGA 353
Query 391 GAATCTGCAGAATCTGTTTAAGTCTTCTGCAAGAGATTGTGTTCCTAAAGAAAGAAGCTC 450
|||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 354 GAATCTTCAGAATTTGTTTAAGTCTTCTGCTAGAGATTGTGTTCCTAAAGAGAGAAGTTC 413
Query 451 TCTTGTTGATTTTCAATCTAAATCCGGAGTTGAGGTTTGTACATTTAAGCTTGTTGTGAA 510
||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 414 TCTTGTTGATTTTCAGTCTAAATCTGGAGTTGAGGTTTATACATTTAAGCTTGTTGTGAA 473
Query 511 GAATGCTGCTTCATTACTTGATGATAAGGATCCAGTTAAATTAGAAGCAGAGAATATACT 570
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 474 GAATGCTGCTTCATTACTTGATGATAAGGATCCAGTCAAATTAGAAGCAGAGAATATACT 533
Query 571 TGATGATCTTGTTAGGTCTTTCGGTTCCCTTATCGTGTTGACGAATGGGGTTGATATGAA 630
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGATGATCTGGTTAGGTCTTTCGGTTCCCTTATCGTGTTGACGAATGGGGTTGATATGAA 593
Query 631 TCTTCCTTCTGATAGaaaaaaaGTTGCAGATGGGGTTACAGAGACTATCTCTTATCTTGA 690
||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||
Sbjct 594 TCTTCCTTCTGATAGAAAAAAGGTTGCAGATGCGGTTACGGAGGCTATCTCTTATCTTGA 653
Query 691 CAAATTTGAGAAGGGTGTCAAAGACTGTCTTGAGATTTGAGATGAAGTCTAGTTCTCTCT 750
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 654 CAAATTTGAGAAGGGTGTCAAGGACTGCCTTGAGATCTGAGATGAAGTCTAGTTCTCTCT 713
Query 751 TCCTTTTCTTCTTGTGAAATCATTATGGCTGAATAGGTGTACCAACtttttttACAACTG 810
|| | | |||||||||| |||||||||| ||||||||||||||||||| |||||| ||
Sbjct 714 TC-TCT-CTTCTTGTGAG--CATTATGGCTAAATAGGTGTACCAACTTTTGTTACAAGTG 769
Query 811 TCTAAGTGAGAGACGATATCTCGTTCTATAT--GAATATACTCTTATGCTTGATGCTGAG 868
| ||||| ||||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 770 TATAAGTCAGAGACGATATCTCGTTCTATATATGAATATAATCATATGCTTGATGCTGAG 829
Query 869 CTTCATTCATC 879
| |||||||||
Sbjct 830 CCTCATTCATC 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37055475324
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5