BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42800.1
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494741 jgi|Araly1|494741|fgenesh2_kg.8__557__AT5G42800.1 1720 0.0
Ahg359227 jgi|Araly1|359227|fgenesh1_pg.C_scaffold_61000004 1690 0.0
> Ahg494741 jgi|Araly1|494741|fgenesh2_kg.8__557__AT5G42800.1
Length=1217
Score = 1720 bits (931), Expect = 0.0
Identities = 1125/1218 (92%), Gaps = 15/1218 (1%)
Strand=Plus/Plus
Query 49 ACAAAAATGGTTAGTCAGAAAGAGACCGTGTGTGTAACCGGCGCTTCGGGTTTCATCGGT 108
||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 2 ACAAAAATGGTTAGTCAGACAGAGACCGTGTGTGTAACGGGCGCTTCGGGATTCATCGGT 61
Query 109 TCATGGCTAGTGATGCGATTACTAGAACGTGGTTACTTTGTTCGTGCCACCGTTCGAGAT 168
||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||
Sbjct 62 TCATGGCTAGTGATGCGATTACTCGAACGTGGTTACTTTGTTCGTGCCACTGTGCGCGAT 121
Query 169 CCCGGTAATTTGAAGAAAGTACAACATCTTCTTGATTTGCCAAACGCCAAGACGCTACTC 228
|| || |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct 122 CCTGGGAATTTGAAGAAAGTGCAACATCTTCTTGATTTGCCAAATGCCAAGACGCAACTC 181
Query 229 ACTTTATGGAAGGCTGATTTATCTGAGGAAGGAAGCTACGATGATGCCATAAACGGATGT 288
|||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 182 ACTTTATGGAAGGCGGATTTATCTGAGGAAGGAAGCTACGATGACGCCATAACCGGATGC 241
Query 289 GACGGTGTTTTCCACGTGGCAACACCCATGGATTTTGAATCAAAAGATCCTGAGAACGAA 348
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 242 GACGGTGTTTTCCACGTGGCAACTCCCATGGATTTTGAATCAAAAGATCCTGAGAACGAA 301
Query 349 GTGATAAAGCCGACAGTGAATGGAATGTTGGGGATAATGAAAGCATGTGTTAAGGCAAAG 408
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 302 GTGATAAAACCGACAGTGAATGGAATGTTGGGGATTATGAAAGCATGTGTTAAGGCAAAG 361
Query 409 ACCGTACGAAGATTCGTATTTACTTCATCTGCCGGAACCGTTAATGTAGAAGAACATCAG 468
|| |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 362 ACTGTACGAAGATTCATATTTACTTCATCTGCTGGAACTGTTAATGTAGAAGAACATCAG 421
Query 469 AAGAATGTCTATGATGAAAATGATTGGAGTGATCTTGAGTTTATCATGTCCAAAAAGATG 528
|||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 422 AAGAGTGTCTACGATGAAAACGATTGGAGCGATCTTGAGTTTATCATGTCCAAAAAGATG 481
Query 529 ACAGGATGGATGTATTTCGTGTCAAAAACGTTAGCGGAGAAAGCAGCGTGGGATTTCGCC 588
||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||| ||||
Sbjct 482 ACAGGATGGATGTATTTTGTGTCGAAAACATTAGCCGAGAAAGCAGCGTGGGATTACGCC 541
Query 589 GAAGAGAAAGGATTAGATTTCATTAGTATTATTCCAACATTGGTGGTCGGTCCATTCATC 648
|| || ||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 542 GAGGAAAAAGGATTAGATTTCGTTAGTATTATTCCAACATTGGTGGTCGGTCCATTTATA 601
Query 649 ACAACGTCTATGCCGCCTAGCCTTATCACCGCGCTCTCTCCTATCACTCGGAACGAGGCG 708
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 602 ACAACATCTATGCCGCCTAGCCTCATCACCGCGCTCTCTCCTATCACTCGGAACGAGGCA 661
Query 709 CATTACTCGATCATAAGACAAGGACAGTATGTGCATTTGGACGACTTATGCAACGCTCAT 768
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 662 CATTACTCGATTATAAGACAAGGACAGTATGTGCATTTGGACGACTTATGCAACTCTCAT 721
Query 769 ATCTTCTTATACGAACAAGCAGCCGCCAAGGGACGTTATATTTGTTCCTCTCATGATGCA 828
||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |||||
Sbjct 722 ATCTTCTTATACGAACAAGAAGCTGCCAAAGGACGTTATATTTGTTCCTCTCACGATGCT 781
Query 829 ACCATTCTTACTATCTCCAAATTTCTCAGGCCAAAATACCCCGAATATAACGTACCTTCA 888
|| ||||||||| ||||| |||||||||||| ||||||| ||||||| ||||| ||||||
Sbjct 782 ACAATTCTTACTCTCTCCGAATTTCTCAGGCAAAAATACTCCGAATACAACGTGCCTTCA 841
Query 889 ACGTTTGAAGGTGTTGATGAGAATCTAAAGAGCATTGAATTCAGTTCCAAGAAGCTGACG 948
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 842 ACGTTTGAAGGTGTTGATGATAATCTAAAGAGCATTGAGTTCAGTTCCAAGAAGCTGACT 901
Query 949 GACATGGGGTTTAACTTCAAGTATAGTCTCGAGGAAATGTTTATTGAATCTATTGAGACA 1008
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 902 GACATGGGGTTTAACTTCAAGTATAGTCTCGAGGAAATGTTAATTGAGTCTATTGAGACA 961
Query 1009 TGTCGTCAAAAGGGTTTTCTCCCGGTTTCATTATCGTACCAATCCATATCGGAGATCAA- 1067
||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |||
Sbjct 962 TGTCGTCAAAAGGGTTTTCTCTCGGTTTCTTTACCGTACCAATCCATATCGGAGAACAAA 1021
Query 1068 G-----ACTAAGAATGAAAACATTGA-CGTCAAAACCGGAGATGGTTTAACCGATGGTAT 1121
| || ||| |||| || ||||| | ||||| |||||||||||||||||||||||||
Sbjct 1022 GGTCCGACGAAGGATGACAATATTGAGC-TCAAAGCCGGAGATGGTTTAACCGATGGTAT 1080
Query 1122 GAAGCCATGTAACAAGACAGAAACGGGGATAACCGGCGAGAGAACCGATGCTCCCATGCT 1181
|| |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1081 GATGCCATGTAACAAGATAGAACCGGGGCTAACCGGCGAGAGAACCGATGCTCCCATGCC 1140
Query 1182 AGCACAACAGATGTGTGCCTAGAAAATTCAA-CTGTTATATTAT-----CATATCGTTTT 1235
|||| ||||||||||||| |||| ||||||| | |||||||||| ||||||| |||
Sbjct 1141 AGCAGAACAGATGTGTGCTTAGAGAATTCAAAC-GTTATATTATATTGTCATATCGCTTT 1199
Query 1236 ACTATTGGAGGTGTGATT 1253
|||||||||||||| |||
Sbjct 1200 ACTATTGGAGGTGTCATT 1217
> Ahg359227 jgi|Araly1|359227|fgenesh1_pg.C_scaffold_61000004
Length=1155
Score = 1690 bits (915), Expect = 0.0
Identities = 1078/1157 (93%), Gaps = 10/1157 (1%)
Strand=Plus/Plus
Query 55 ATGGTTAGTCAGAAAGAGACCGTGTGTGTAACCGGCGCTTCGGGTTTCATCGGTTCATGG 114
||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1 ATGGTTAGTCAGACAGAGACCGTGTGTGTAACGGGCGCTTCGGGATTCATCGGTTCATGG 60
Query 115 CTAGTGATGCGATTACTAGAACGTGGTTACTTTGTTCGTGCCACCGTTCGAGATCCCGGT 174
||||||||||||||||| |||||||||||||||||||||||||| || || ||||| ||
Sbjct 61 CTAGTGATGCGATTACTCGAACGTGGTTACTTTGTTCGTGCCACTGTGCGCGATCCTGGG 120
Query 175 AATTTGAAGAAAGTACAACATCTTCTTGATTTGCCAAACGCCAAGACGCTACTCACTTTA 234
|||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 121 AATTTGAAGAAAGTGCAACATCTTCTTGATTTGCCAAATGCCAAGACGCAACTCACTTTA 180
Query 235 TGGAAGGCTGATTTATCTGAGGAAGGAAGCTACGATGATGCCATAAAC-GGATGTGACGG 293
||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 181 TGGAAGGCTGATTTATCTGAGGAAGGAAGCTACGATGGCGCCAT-AACTGGATGTGACGG 239
Query 294 TGTTTTCCACGTGGCAACACCCATGGATTTTGAATCAAAAGATCCTGAGAACGAAGTGAT 353
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTTTTCCACGTGGCAACTCCCATGGATTTTGAATCAAAAGATCCTGAGAACGAAGTGAT 299
Query 354 AAAGCCGACAGTGAATGGAATGTTGGGGATAATGAAAGCATGTGTTAAGGCAAAGACCGT 413
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 300 AAAACCGACAGTGAATGGAATGTTGGGGATTATGAAAGCATGTGTTAAGGCAAAGACTGT 359
Query 414 ACGAAGATTCGTATTTACTTCATCTGCCGGAACCGTTAATGTAGAAGAACATCAGAAGAA 473
|||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 360 ACGAAGATTCATATTTACTTCATCTGCTGGAACTGTTAATGTAGAAGAACATCAGAAGAG 419
Query 474 TGTCTATGATGAAAATGATTGGAGTGATCTTGAGTTTATCATGTCCAAAAAGATGACAGG 533
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 TGTCTACGATGAAAACGATTGGAGCGATCTTGAGTTTATCATGTCCAAAAAGATGACAGG 479
Query 534 ATGGATGTATTTCGTGTCAAAAACGTTAGCGGAGAAAGCAGCGTGGGATTTCGCCGAAGA 593
|||||||||||| ||||| ||||| ||||| ||||||||||||||||||| |||||| ||
Sbjct 480 ATGGATGTATTTTGTGTCGAAAACATTAGCCGAGAAAGCAGCGTGGGATTACGCCGAGGA 539
Query 594 GAAAGGATTAGATTTCATTAGTATTATTCCAACATTGGTGGTCGGTCCATTCATCACAAC 653
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 AAAAGGATTAGATTTCATTAGTATTATTCCAACATTGGTGGTCGGTCCATTCATAACAAC 599
Query 654 GTCTATGCCGCCTAGCCTTATCACCGCGCTCTCTCCTATCACTCGGAACGAGGCGCATTA 713
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 ATCTATGCCGCCTAGCCTCATCACCGCGCTCTCTCCTATCACTCGGAACGAGGCACATTA 659
Query 714 CTCGATCATAAGACAAGGACAGTATGTGCATTTGGACGACTTATGCAACGCTCATATCTT 773
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 CTCGATTATAAGACAAGGACAGTATGTGCATTTGGACGACTTATGCAACTCTCATATCTT 719
Query 774 CTTATACGAACAAGCAGCCGCCAAGGGACGTTATATTTGTTCCTCTCATGATGCAACCAT 833
|||||||||||||| | | ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 720 CTTATACGAACAAGAAACTGCCAAGGGACGTTATATTTGTTCCTCTCACGATGCTACAAT 779
Query 834 TCTTACTATCTCCAAATTTCTCAGGCCAAAATACCCCGAATATAACGTACCTTCAACGTT 893
||||||| |||| ||| ||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 780 TCTTACTCTCTCAAAACTTCTCAGGCAAAAATACCCCGAATACAACGTGCCTTCAACGTA 839
Query 894 TGAAGGTGTTGATGAGAATCTAAAGAGCATTGAATTCAGTTCCAAGAAGCTGACGGACAT 953
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 840 TGAAGGTGTGGATGAGAATCTAAAGAGCATTGAGTTCAGTTCCAAGAAGCTGACTGACAT 899
Query 954 GGGGTTTAACTTCAAGTATAGTCTCGAGGAAATGTTTATTGAATCTATTGAGACATGTCG 1013
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 GGGGTTTAACTTCAAGTATAGTCTCGAGGAAATGTTTATTGAGTCTATTGAGACATGTCG 959
Query 1014 TCAAAAGGGTTTTCTCCCGGTTTCATTATCGTACCAATCCATATCGGAGATCAA-G---- 1068
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
Sbjct 960 TCAAAAGGGTTTTCTCCCGGTTTCTTTATCGTACCAATCCATATCGGAGAACAAAGGTCC 1019
Query 1069 -ACTAAGAATGAAAACATTGA-CGTCAAAACCGGAGATGGTTTAACCGATGGTATGAAGC 1126
|| ||| |||| || ||||| | ||||| ||||||||||||||||||||||||||| ||
Sbjct 1020 GACGAAGGATGACAATATTGAGC-TCAAAGCCGGAGATGGTTTAACCGATGGTATGATGC 1078
Query 1127 CATGTAACAAGACAGAAACGGGGATAACCGGCGAGAGAACCGATGCTCCCATGCTAGCAC 1186
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1079 CATGTAACAAGATAGAACCGGGGCTAACCGGCGAGAGAACCGATGCTCCCATGCCAGCAG 1138
Query 1187 AACAGATGTGTGCCTAG 1203
||||||||||||| |||
Sbjct 1139 AACAGATGTGTGCTTAG 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5