BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42810.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494739 jgi|Araly1|494739|fgenesh2_kg.8__555__AT5G42810.1 2388 0.0
Ahg887481 jgi|Araly1|887481|Al_scaffold_0061_2 737 0.0
> Ahg494739 jgi|Araly1|494739|fgenesh2_kg.8__555__AT5G42810.1
Length=1714
Score = 2388 bits (1293), Expect = 0.0
Identities = 1589/1730 (92%), Gaps = 27/1730 (2%)
Strand=Plus/Plus
Query 15 AATTTTGACTCTCCTCC-AAACAGAGAGACAAAGTAAGCCAAGCGTCTTTGGTGTAGTCC 73
||||||||||||||||| ||||||||||||||| ||||||||||||| ||| | ||||||
Sbjct 1 AATTTTGACTCTCCTCCAAAACAGAGAGACAAATTAAGCCAAGCGTCATTGTTCTAGTCC 60
Query 74 ACCACCACGTTTGAGCTCGACGCAGAGAGAGAAGAATACTTCAAAGCTCTCCTTCTTCTT 133
|| ||||||||| ||||||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct 61 ACTACCACGTTTAAGCTCGACGCATAGAGAGAAGGATCCTTCAAAGCTCTCCTTCGTCTT 120
Query 134 CTTCAACCACTAG--AA--ATCTTCGTTCTCTATTCAATTGCATTGCGTTAGCAAAATTC 189
||||||| ||||| || | |||| || || ||||||||||||||||||||| ||||||
Sbjct 121 CTTCAACTACTAGAAAACGAACTTCATTTTCGATTCAATTGCATTGCGTTAGCGAAATTC 180
Query 190 TGGTGAATT-GATTTGATCAGATCTTCGCTTGATTTCGATTTTAAAAATCGAAGAATTTT 248
||||| ||| |||||||||||||||| | || | |||| | ||||||||||||||
Sbjct 181 TGGTG-ATTCGATTTGATCAGATCTT--C--GA--T---TTTTCAGAATCGAAGAATTTT 230
Query 249 GTATCGCATGGAGATGATTTTGGAGGAGAAAGATGCATCAGATTGGATTTACAGAGGCGA 308
|||| ||||||||| ||||||| |||||||||||||| ||||||||||| ||||| ||
Sbjct 231 -AATCGGATGGAGATGGTTTTGGAAGAGAAAGATGCATCTGATTGGATTTATAGAGGAGA 289
Query 309 AGGTGGTGCCAATCTCGTTCTTGCTTACGCTGGATCTTCTCCACTTTTTGTTGGGAAAGT 368
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 290 AGGTGGTGCTAATCTCGTTCTTGCTTACGCTGGATCTTCTCCGCTTTTTGTGGGGAAAGT 349
Query 369 GATTCGTATACAGAAGGCTCGGAGGAATGATAAAGCA-ATCAAGAATGCGAATGGTGTTG 427
||||||||||||||||||||||||||||||||||||| || | || ||||||||| ||||
Sbjct 350 GATTCGTATACAGAAGGCTCGGAGGAATGATAAAGCACAT-ATGACTGCGAATGGCGTTG 408
Query 428 TTTCGGTTTTAACAAGCGATGAGCAACATCTATGGAGAGAAAACAATGAGCTGATTTCAT 487
||||||||||||||||||||||||||| ||| ||||| |||||||| ||||| |||||||
Sbjct 409 TTTCGGTTTTAACAAGCGATGAGCAACTTCTGTGGAGGGAAAACAAGGAGCTTATTTCAT 468
Query 488 CACCAAACAAGGAAGTTCTTGAACAAAGATATGTTAAGAATGTGATCATCCCACTCTTGG 547
|||| |||||||||||||||||||| |||||||||||| ||||||| || ||||||||||
Sbjct 469 CACCGAACAAGGAAGTTCTTGAACAGAGATATGTTAAGCATGTGATTATTCCACTCTTGG 528
Query 548 GTCCTAAACATGTTGATGCTGGAGTACGTGTTTCTGTGTCCAAGGAGTTTCTTGAGTGTG 607
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 529 GTCCTAAACATGTTGATGCAGGAGTACGTGTTTCTGTGTCCAAGGAATTTCTTGAGTGTG 588
Query 608 TTGATAAGAAAGTAACTAAGCAGCGTCCGCTATGGCGTGTTAATGCAGCAAATGTTGATA 667
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 589 TTGATAAGAAAGTTACTAAGCAGCGTCCGCTATGGCGTGTTAATGCAGCACATGTTGATA 648
Query 668 CGAGTCATGATTCTGCCCTTATATTGAATGATCATTCACTTTTTTCTCAAGGTATTTCTA 727
| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||
Sbjct 649 CCAGTCATGATTCTGCCCTTATTTTGAATGATCATTCACTTTTCTCTCATGGTATTTTTA 708
Query 728 GCGGTGGTGATTGCATTAGTGTTGAAATAAAGCCCAAATGCGGATTTCTTCCAACCTCAA 787
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 709 GCATTGGTGATTGCATTAGTGTTGAAATTAAGCCCAAATGCGGATTTCTTCCAACCTCAA 768
Query 788 GGTTCATAGGTAAAGAAAACATGCTCAAAACAAGCGTAAGCCGTTTCAAAATGCATCAAC 847
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 769 GGTTCATATGTAAAGAAAACATGCTGAAAACAAGCGTAAGCCGTTTCAAAATGCATCAAC 828
Query 848 TCTTAAAGTTGGAATATAACGAGATATCTGAAGAAAGCGAGTACGATCCTCTTGATCTCT 907
| || |||||||||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct 829 TTTTGAAGTTGGAATATAACGAGATATCTGAAGAAAGTGAATATGATCCTCTTGATCTGT 888
Query 908 TCTCTGGATCAAAAGAGAGTGTTTTGGAAGCTATAAAAGCTTTATATTCCACTCCTCAAA 967
|||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||
Sbjct 889 TCTCTGGATCTAAAGAGAGAGTTTTGGAAGCTATAAAAGCCTTATATTCTACTCCCCAAA 948
Query 968 ACAATTTCCGCGTATTCTTGAATGGTTCTCTCATATTAGGGGGTTCAGGTGAAAGCACCG 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 949 ACAATTTCCGCGTATTCTTGAATGGTTCTCTCATATTAGGGGGTTCAGGTGAAAGCACAG 1008
Query 1028 GGAGAACCAGCCCCGAAATCGGGTATGCCTTTGAGGATGCTCTCAAAGGCTTCATTCAAT 1087
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1009 GGAGAACCAGCCCCGAGATCGGGTATGCCTTTGAGGATACTCTCAAAGGCTTCATTCAAT 1068
Query 1088 CAGAAGACGGTCATAGGAC-AGAGTGCTTTCTACAACTAGTATCTGACGCTGTCTATGGC 1146
||||||||||||| ||||| | | ||||||||||| ||||||||||||||||||||||||
Sbjct 1069 CAGAAGACGGTCACAGGACTA-AATGCTTTCTACAGCTAGTATCTGACGCTGTCTATGGC 1127
Query 1147 TCAGGAGTTCTTGATAGACTTCTTGAAATTCAGAAGCTAGACAAATTAGACATTGAAGGA 1206
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TCAGGAGTGCTCGATAGACTTCTTGAAATTCAGAAGCTAGACAAATTAGACATTGAAGGA 1187
Query 1207 GCGATTCATTCGTATTACGAT-TTAATCAACCAGCCTTGTCCTATATGTAAAGA-AGGTA 1264
|||||||||| ||||||||| ||| |||||||||||||| ||||||||||||| || |
Sbjct 1188 TCGATTCATTCTTATTACGATATTA-TCAACCAGCCTTGTGCTATATGTAAAGAGAG-TG 1245
Query 1265 AGCCACTGGAGGCGGAATTGTCTCTACATGCTTTACCTTTAGATGAAAGCTTGAAGATTG 1324
|||||||||||| | | ||||||||| ||||||| ||||||||||| || ||||| |
Sbjct 1246 GGCCACTGGAGGCATACTCATCTCTACATACTTTACCGTTAGATGAAAGTTTAAAGATCG 1305
Query 1325 TGAAGGAGTATTTGATAGCTGCAACTGCCAAAGACTGTAGTATTATGATCAGTTTTCAAT 1384
||||||| ||| || ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1306 TGAAGGACTATCTGGTAGCTGCAACTGCTAAAGACTGTAGTATTATGATCAGTTTTCAAT 1365
Query 1385 CAAGGAATGCTTGGGATTCAGAACCCTCGGGTGATTACGTCTCTCTAAAACCGACCAATC 1444
|||||| |||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 1366 CAAGGAGTGCTTGGGATTCAGAACCTTCTTGTGATTACATCTCTCTAAAACCGACCAATC 1425
Query 1445 AAACGTTTGATTACAAGGTACATTTCATTGATCTAAGCCTGAAACCACTTAAGAGAATGG 1504
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1426 AAACATTTGATTACAAGGTACATTTCATTGATCTAAGCCTGAAACCACTAAAGAGAATGG 1485
Query 1505 AGTCATACTACAAATTGGATAAGAAGATAATTAGCTTTTACAATCGGAAGCAGAAAGC-C 1563
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1486 AGTCATACTACAAACTGGATAAGAAGATAATTAGCTTCTACAATCGGAAGCAGAA-GCTC 1544
Query 1564 GAAAACACGGCAGAACAAATCGGCAACTCAAAACCTTCCCACAGCTAAGTCATGTATCGT 1623
|||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct 1545 GAAAACGTGGCAGAACAAATCGGCGACTCAAAACCTTCGCACAGCTAAGTCATGGATCGT 1604
Query 1624 CTCAATACCACTAGCTCTCttttttttGGTTACTGTTGTTGTAGAACATAATAAAGAAAG 1683
|||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1605 CTCAATACCACTAGCTGTTTTTTTTTTCGTTACTGTTGTTGTAAAACATAATAAAGAAAG 1664
Query 1684 CCCTAAAAGATGAATGTTCATTTCTTAAACTTAAAATTTGTTGGAACTAT 1733
|||||||||||||||||||||||| ||||||| |||||| ||||||||||
Sbjct 1665 CCCTAAAAGATGAATGTTCATTTCCTAAACTTGAAATTTATTGGAACTAT 1714
> Ahg887481 jgi|Araly1|887481|Al_scaffold_0061_2
Length=507
Score = 737 bits (399), Expect = 0.0
Identities = 466/499 (93%), Gaps = 2/499 (0%)
Strand=Plus/Plus
Query 262 ATGATTTTGGAGGAGAAAGATGCATCAGATTGGATTTACAGAGGCGAAGGTGGTGCCAAT 321
||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||
Sbjct 1 ATGGTTTTGGAGGAGAAAGATGCATCTGATTGGATTTATAGAGGAGAAGGTGGTGCTAAT 60
Query 322 CTCGTTCTTGCTTACGCTGGATCTTCTCCACTTTTTGTTGGGAAAGTGATTCGTATACAG 381
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 61 CTCGTTCTTGCTTACGCTGGATCTTCTCCGCTTTTTGTGGGGAAAGTGATTCGTATACAG 120
Query 382 AAGGCTCGGAGGAATGATAAAGCA-ATCAAGAATGCGAATGGTGTTGTTTCGGTTTTAAC 440
|||||||||||||||||||||||| || | || ||||||||| |||||||||||||||||
Sbjct 121 AAGGCTCGGAGGAATGATAAAGCACAT-ATGACTGCGAATGGCGTTGTTTCGGTTTTAAC 179
Query 441 AAGCGATGAGCAACATCTATGGAGAGAAAACAATGAGCTGATTTCATCACCAAACAAGGA 500
|||||||||||||| ||| ||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 180 AAGCGATGAGCAACTTCTGTGGAGGGAAAACAAGGAGCTTATTTCATCACCGAACAAGGA 239
Query 501 AGTTCTTGAACAAAGATATGTTAAGAATGTGATCATCCCACTCTTGGGTCCTAAACATGT 560
|||||||||||| |||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct 240 AGTTCTTGAACAGAGATATGTTAAGCATGTGATTATTCCACTCTTGGGTCCTAAACATGT 299
Query 561 TGATGCTGGAGTACGTGTTTCTGTGTCCAAGGAGTTTCTTGAGTGTGTTGATAAGAAAGT 620
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 TGATGCAGGAGTACGTGTTTCTGTGTCCAAGGAATTTCTTGAGTGTGTTGATAAGAAAGT 359
Query 621 AACTAAGCAGCGTCCGCTATGGCGTGTTAATGCAGCAAATGTTGATACGAGTCATGATTC 680
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 360 TACTAAGCAGCGTCCGCTATGGCGTGTTAATGCAGCACATGTTGATACCAGTCATGATTC 419
Query 681 TGCCCTTATATTGAATGATCATTCACTTTTTTCTCAAGGTATTTCTAGCGGTGGTGATTG 740
||||||||| |||||||||||||||||||| ||||| ||||||| |||| |||||||||
Sbjct 420 TGCCCTTATTTTGAATGATCATTCACTTTTCTCTCATGGTATTTTTAGCATTGGTGATTG 479
Query 741 CATTAGTGTTGAAATAAAG 759
|||||||||||||||||||
Sbjct 480 CATTAGTGTTGAAATAAAG 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5