BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42820.2 Length=1495 Score E Sequences producing significant alignments: (Bits) Value Ahg494737 jgi|Araly1|494737|fgenesh2_kg.8__553__AT5G42820.1 1565 0.0 Ahg494739 jgi|Araly1|494739|fgenesh2_kg.8__555__AT5G42810.1 252 6e-66 > Ahg494737 jgi|Araly1|494737|fgenesh2_kg.8__553__AT5G42820.1 Length=1211 Score = 1565 bits (847), Expect = 0.0 Identities = 959/1014 (95%), Gaps = 4/1014 (0%) Strand=Plus/Plus Query 2 ctctctctctctctcCGGCTCACACGAGTCGCTAATCAAATAAACCTAAACCCTAGATCG 61 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 CTCTCTCTCTCTCTCCGGCTCACACGAGTCGCTAATCAAATAACCCTAAACCCTAGATCG 60 Query 62 TGATCGGCAACGGCACCTCCTCGTCGGCGATAGCTTCTCTTCCACTAAAAGAAAATCCTC 121 ||||||| ||| |||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 61 TGATCGGAAACAACACCTCCTCGTCGGCGATAGCTTCTCTTCCACTAAAAGCAACTCCTC 120 Query 122 TTCGGTGAGAATGGCAGAGCATTTAGCTTCAATCTTTGGTACTGAAAAGGATAGAGTGAA 181 |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 121 TTCGGTGAAAATGGCAGAGCATTTGGCTTCAATCTTTGGTACTGAAAAAGATAGAGTGAA 180 Query 182 TTGTCCGTTTTACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTGTCCGTTTTACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCA 240 Query 242 TAACCGTCCCACCATCTCGCCGACGCTTCTCCTCTCGAACATGTACCAGAGACCTGACAT 301 |||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||| Sbjct 241 TAACCGTCCCACTATCTCCCCGACGCTCCTTCTCTCGAACATGTATCAGAGACCTGACAT 300 Query 302 GATAACTCCAGGTGTGGATCCTCAGGGACAGCCGTTAGACCCGAGTAAGATCCAAGACCA 361 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 301 GATAACTCCAGGTGTGGATCCTCAGGGTCAGCCATTAGACCCGAGTAAGATCCAAGACCA 360 Query 362 CTTTGAGGATTTCTACGAAGATATTTTCGAAGAACTCAACAAGTTTGGTGAAGTGGAGAG 421 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 361 CTTTGAGGATTTCTATGAAGATATTTTCGAAGAACTTAACAAGTTTGGTGAAGTGGAGAG 420 Query 422 TCTCAATGTTTGTGACAATCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAA 481 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TCTCAATGTTTGTGATAACCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAA 480 Query 482 GGAGGAGGATCACGCAGCTGCTGCGTTGCAGGCTTTGCAGGGGAGATTTTATTCCGGTCG 541 ||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || || || Sbjct 481 GGAGGAGGATCACGCTGCTGCTGCGTTGCAGGCTTTGCAAGGGAGGTTTTACTCTGGACG 540 Query 542 TCCTATCATTGCTGATTTCTCTCCTGTGACGGATTTTAGGGAAGCTACTTGTAGGCAGTA 601 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 541 TCCTATCATTGCTGATTTCTCTCCTGTGACGGATTTCCGGGAAGCTACTTGTAGGCAGTA 600 Query 602 TGAAGAAAACAGCTGTAACCGTGGTGGGTACTGTAATTTCATGCATGTGAAGCAGATTTC 661 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 601 TGAAGAAAACAGTTGTAACCGTGGTGGGTATTGTAATTTCATGCATGTGAAGCAGATTTC 660 Query 662 GAGGGAGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGTTCATACCGTCGGGGAAGCAG 721 ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 661 GAGGGAGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGGTCATACCGCCGGGGAAGTAG 720 Query 722 AAGTCGAAGCAGGAGTATAAGCCCTCGACGTAagagagagcattcgcgagagcgagagag 781 ||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 721 AAGCCGGAGCAGGAGTATAAGCCCTCGACGCAAGAGAGAGCATTCGCGGGAGCGAGAGAG 780 Query 782 agGGGACGTT-AGGGACCGTGACCGGCATGGAAATGGGAAAAGGAGCAGTGATAGATCAG 840 |||||| || |||||||||||||| ||||||||||||||| | |||||||||||||||| Sbjct 781 AGGGGAT-TTGAGGGACCGTGACCGCCATGGAAATGGGAAACGAAGCAGTGATAGATCAG 839 Query 841 AGAGGCATGATCGGGATGGTGGTGGAAGGAGGAGACATGGAAGCCCGAAACGGAGCAGAA 900 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 840 AGAGGCATGATCGAGATGGTGGTGGAAGAAGGAGACATGGAAGCCCGAAACGGAGCAGAA 899 Query 901 GCCCACGAAATGTGAGAGAAGGAAGCGAGGAAAGGAGGGCGAGAATTGAGCAATGGAACC 960 | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 900 GTCCACGAAATGTGAGAGAAGGAAGTGAGGAAAGGAGGGCAAGAATTGAGCAATGGAACC 959 Query 961 GAGAACGTGATGAGGGAGTTTAAGGGTA-TCGTTTGGGCTGATTACTTCATAAA 1013 ||||||| |||||||||||||||| ||| | |||||| |||||| ||||| ||| Sbjct 960 GAGAACGCGATGAGGGAGTTTAAGAGTAAT-GTTTGGACTGATTGCTTCAGAAA 1012 > Ahg494739 jgi|Araly1|494739|fgenesh2_kg.8__555__AT5G42810.1 Length=1714 Score = 252 bits (136), Expect = 6e-66 Identities = 163/176 (93%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 1319 ATAGTTCCAACAAATTTTAAGTTTAAGAAATGAACATTCATCTTTTAGGGCTTTCTTTAT 1378 |||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1714 ATAGTTCCAATAAATTTCAAGTTTAGGAAATGAACATTCATCTTTTAGGGCTTTCTTTAT 1655 Query 1379 TATGTTCTACAACAACAGTAACCaaaaaaaaGAGAGCTAGTGGTATTGAGACGATACATG 1438 |||||| ||||||||||||||| |||||||| | ||||||||||||||||||||| |||| Sbjct 1654 TATGTTTTACAACAACAGTAACGAAAAAAAAAACAGCTAGTGGTATTGAGACGATCCATG 1595 Query 1439 ACTTAGCTGTGGGAAGGTTTTGAGTTGCCGATTTGTTCTGCCGTGTTTTCG-GCTT 1493 ||||||||||| ||||||||||||| |||||||||||||||| ||||||| |||| Sbjct 1594 ACTTAGCTGTGCGAAGGTTTTGAGTCGCCGATTTGTTCTGCCACGTTTTCGAGCTT 1539 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55954569905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5