BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42830.1 Length=1465 Score E Sequences producing significant alignments: (Bits) Value Ahg948948 jgi|Araly1|948948|scaffold_800835.1 1923 0.0 Ahg487616 jgi|Araly1|487616|fgenesh2_kg.6__750__AT5G07850.1 398 8e-110 > Ahg948948 jgi|Araly1|948948|scaffold_800835.1 Length=1367 Score = 1923 bits (1041), Expect = 0.0 Identities = 1271/1377 (92%), Gaps = 35/1377 (3%) Strand=Plus/Plus Query 1 ATGGATTCTTCATCTTCAGTAAAAATCGTCTCGAAAAGCTTCGTGAAACCCAAAACCTTA 60 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 21 ATGGATTCTTCATCTTCAGTAAAAATCGTCTCGAAATGCTTCGTGAAACCCAAAACCATA 80 Query 61 CCAGAAGAATCAAAGCAACCATACTATTTATCTCCATGGGACTACGCAATGCTCTCTGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 CCAGAAGAATCAAAGCAACCATACTATTTATCTCCATGGGACTACGCAATGCTCTCTGTT 140 Query 121 CAGTACATCCAAAAAGGTCTTCTCTTTCACAAGCCACCACTTGACTCCATTGACACTCTT 180 || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 141 CAATACATCCAAAAAGGTCTTCTCTTTCACAAGCCATCACTTGACTCCATTGACACT-TT 199 Query 181 -CTTGAGAAGCTAAAAGATTCTCTGGCCGTCACACTAGTCCATTTCTACCCTCTCGCGGG 239 ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 200 GCTTGAGAAGCTAAGAGAGTCTCTGGCTGTCACACTAGTCCATTTCTACCCTCTCGCGGG 259 Query 240 TCGCCTCTCATCGTTAACAACGGAAAAACCGAAATCTTACTCTGTTTTCGTTGATTGTAA 299 ||| ||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct 260 TCGTCTCTCGTCGTTGACAACCGAAAATCCGAAATCTTACTCTGTTTTTGTTGATTGTAA 319 Query 300 CGATAGCCCTGGCGCGGGGTTTATCTACGCGACCTCAGATTTATGTATAAAAGATATTGT 359 ||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||| Sbjct 320 CGAGAGCCCTGGCGCTGGGTTTATCTACGCGACCTCAGATTTATGTGTAGAAGATATTGT 379 Query 360 GGGTGCTAAGTATGTCCCTTCAATTGTTCAATCTTTCTTTGACCATCACAAAGCTGTGAA 419 ||||||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||||| Sbjct 380 GGGTGCTAAGTATGTTCCTTCGATTGTTCATTCTTTCTTTGACCATCACAGAGCTGTGAA 439 Query 420 TCATGATGGACACACCATGAGCCTCTTATCTGTCCAGGTGACAGAATTGGTAGATGGAAT 479 |||||||||||||||| |||| | | ||| | | | | | || | ||| Sbjct 440 TCATGATGGACACACCCTGAG-C-C---TCT-T--A--T--C---A---GTCCA--GAA- 478 Query 480 TTTCATAGGACTGTCTATGAACCATGCGATGGGAGACGGTACTGCGTTCTGGAAGTTCTT 539 | | ||||||||||||||||||| |||||||||||||||||| ||||||||| |||| Sbjct 479 --T--T-GGACTGTCTATGAACCATGTGATGGGAGACGGTACTGCCTTCTGGAAG-TCTT 532 Query 540 TACCGCATGGTCCGAAATCTTCCAAGGACAAGAGAGCAACCAAAACGATGACTTGTGTCT 599 |||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||| Sbjct 533 TACCGCTTGGTCCGAAATCTTCCAAGGACAAGAAAGCAACAAAAACAATGACTTGTGTCT 592 Query 600 TAAGAATCCACCCGTGTTGAAGCGTTACATCCCTGAAGGATACGGTCCTCTATTCAGCCT 659 ||| |||||||| || || |||||||||||||||||||||||||||||||| |||||||| Sbjct 593 TAAAAATCCACCGGTCTTAAAGCGTTACATCCCTGAAGGATACGGTCCTCTCTTCAGCCT 652 Query 660 TCCATATAGTCATCCAGATGAATTTATCAGAACCTACGAATCTCCAATTCTCAAGGAGAG 719 ||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||| || Sbjct 653 TCCCTATAGCCATCCTGATGAATTTATCAGAACCTACGAATCTCCAGTTCTCAAGGAAAG 712 Query 720 AATGTTCTGTTTCTCATCAGAAACCATAAGAATGCTTAAAACAAGGGTCAACCAAATATG 779 ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| Sbjct 713 AATGTTCTGTTTCTCATCAGAAACCATAAGATTGCTTAAAGCAAAGGTCAACCAAATATG 772 Query 780 CGGAACAACCTCCATCTCATCTTTCCAATCGCTAACCGCGGTTATATGGAGATGCATAAC 839 |||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 773 CGGAACTACCTCCATTTCATCTTTCCAGTCGCTAACCGCGGTTATATGGAGATGCATAAC 832 Query 840 AAGGGCGA-GGAGATTACCTCTCGATCGAGAAACAAGTTGTAGAGTTGCTGCTGACAACA 898 |||||| | |||||||||| ||||| |||||||||||||||||| ||||||||||||||| Sbjct 833 AAGGGC-ACGGAGATTACCCCTCGACCGAGAAACAAGTTGTAGAATTGCTGCTGACAACA 891 Query 899 GAGGAAGAATGTATCCACCGCTTCACAAGGATTACTTCGGAAACTGCCTCTCTGCTTTGA 958 ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| Sbjct 892 GAGGAAGAATGTATCCACCGCTTCACAAGGAGTACTTTGGAAACTGCCTCTCTTCTTTGA 951 Query 959 GAACGGCTGCAAAAGCTGGTGAACT-ATTGGAGAATGATCTTGGATTTGCTGCTTTGAAA 1017 |||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| Sbjct 952 GAACGGCTGCAAAAGCTGGTGAGCTGA-TGGAGAATGATCTTGGATTTGCTGCTTTGAAA 1010 Query 1018 GTGCATCAAGCAGTAGCTGAACATACGAGCGAAAAGGTATCTCAAATGATTGATCAATGG 1077 ||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 1011 GTGCATCAAGCGGTAGCTGAACATACTAGTGAAAAAGTATCTCAAATGATTGATCAATGG 1070 Query 1078 CTAAAGTCTCCTTAT-ATTTACCATATTGATCGGCTATTTGAACCGATGAGCGTTATGAT 1136 ||||||| |||| | |||||||||||||||||||| |||||||||||||||||| |||| Sbjct 1071 TTAAAGTCCCCTT-TCATTTACCATATTGATCGGCTTTTTGAACCGATGAGCGTTGTGAT 1129 Query 1137 GGGAAGCTCGCCGAGGTTTAATAAGTATGGTTGTGAATTTGGGTTGGGAAAAGGAGTGAC 1196 ||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 1130 GGGAAGCTCACCGAGGTTTAACAAGTATGGTTGTGAATTTGGGATGGGAAAAGGAGTGAC 1189 Query 1197 GCTTAGAAGTGGCTATGCGCATAAGTTCGATGGAAAGGTATCTGCTTACCCGGGAAGAGA 1256 || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1190 ACTAAGAAGTGGCTACGCGCATAAGTTTGATGGAAAGGTATCTGCTTACCCGGGAAGAGA 1249 Query 1257 AGGAGGGGGAAGTATAGATTTGGAGGTATGTCTTGTTCCAGAGTTTATGGAAGCTTTGGA 1316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1250 AGGAGGGGGAAGTATAGATTTGGAGGTATGTCTTGTTCCAGAGTTTATGGAAGCTTTGGA 1309 Query 1317 ATCAGATGAAGAGTTCATGTCACTTGTTTCTCTTTGAAAATTTACCAATTTCTTCCA 1373 ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| Sbjct 1310 ATCAGATGAAGAGTTTATGTCACTTGTTTCTCTTTAAAAAATTACCAATTTCTTCCA 1366 > Ahg487616 jgi|Araly1|487616|fgenesh2_kg.6__750__AT5G07850.1 Length=1370 Score = 398 bits (215), Expect = 8e-110 Identities = 1020/1393 (73%), Gaps = 117/1393 (8%) Strand=Plus/Plus Query 8 CTTCATCTTCAGTAAAAATCGTCTCGAAAAGCTTCGTGAAACCCAAAACCTTACCAGAAG 67 ||||||| |||||||||||| || || |||| || |||||||||||| | || ||| Sbjct 11 CTTCATCGGAAGTAAAAATCGTTTCTCAATGCTTTGTTAAACCCAAAACCATCCCCGAAA 70 Query 68 AAT-CAAAGCAACCATACTATTTATCTCCATGGGA-CTACGCAATGCTCTCTGTTCAGTA 125 ||| |||| | |||||| ||||||| || | ||| || | ||||||||| | || || Sbjct 71 AATGGAAAG-AGCCATACCATTTATCACCCTTGGATCT-TGTGATGCTCTCTATGCATTA 128 Query 126 -CATCCAAAAAGGTCTTCTC-TT-TC--A-C--A--A-GC---C--ACCACTTGACTCCA 169 | ||||||| ||||||||| || || | | | | || | | || || | || Sbjct 129 TC-TCCAAAATGGTCTTCTCTTTCTCAAATCTGATGATGCAATCAAAACAAAAGATTTCA 187 Query 170 TTGACACTCTT-CTTGAGAAGCTAAAAGATTCTCTGGCCGTCACACTAGTCCATTTCTAC 228 | || ||| || || | ||||| | ||||||| |||| || || || |||||||| || Sbjct 188 TGGAGACT-TTGCTACAAAAGCTTAGAGATTCTATGGCTGTAACCCTTGTCCATTTTTAT 246 Query 229 CCTCTCGCGGGTCGCCTCT-CATCGTTAACAACGGAAAAACCGAAATCTTACTCTGT-TT 286 || ||||||||||| |||| || | |||| ||| || || |||| ||| ||||| || || Sbjct 247 CCGCTCGCGGGTCGTCTCTCCA-CTTTAAAAACCGACAATCCGAGATCCTACTCGGTGTT 305 Query 287 TCGTTGATTGTAACGATAG-CCCTGGCGCGGGGTTTATCTACGCGACCTCAGATTTATGT 345 | || |||||||| || || ||| || || || |||||| || | || ||| || || Sbjct 306 T-GTGGATTGTAATGACAGTCCC-GGGGCTGGATTTATCCGTGCTAAATCGGATCTAAGT 363 Query 346 ATAAAAGATATTG-TGGGTGCTAAGTATGTCCCTTCAATTGTTCAATCTTTCTTTGACCA 404 ||| |||||||| || || | || ||||| |||| |||||||||||||||||||||| Sbjct 364 GTAAGAGATATTGTTGAGT-CCAAATATGTTCCTTTGGTTGTTCAATCTTTCTTTGACCA 422 Query 405 TCACAAAGCTGTGAATCATGATGGACACACCATGAGCCTCTTATCTGTCCAGGTGACAGA 464 || ||||| |||| |||||||| ||||||||||| ||||| || ||| |||| ||||| Sbjct 423 CCATAAAGCCGTGAGCCATGATGGTCACACCATGAGTCTCTTCTCAGTCAAGGTAACAGA 482 Query 465 ATTGGTAGATGGAATTTTCATAGGACTGTCTA-TGAACCATGC-GATGGGAGACGGTA-C 521 ||||||||||||| | ||||||||| |||| | |||| || || | ||||||| || | Sbjct 483 ATTGGTAGATGGAGTGTTCATAGGATTGTC-ATTGAATCACGCTG-TGGGAGATGG-AGG 539 Query 522 TGCGTTCTGGAAGTTCTTT-ACCGCATGGTCCGAAATCTTCCAA-GGACAAGAGAGCAAC 579 | | || ||| | || ||| | | | | ||| || || || ||| | || | ||| || Sbjct 540 TACATTATGGCA-TTTTTTCAACTCTTTGTCGGAGAT-TTTCAATGCAC-A-AGA--AA- 592 Query 580 CAAAACGATGACTTG-TGTCTTAAGAATCCACCCGT-GTTGAAGCGTTACATCCCTGAAG 637 | |||| ||||| | ||| |||||||| || || || | |||| | ||| ||| Sbjct 593 C----CGATAACTTGCT-TCTCAAGAATCCTCCAGTACTTTCA-CGTTGGTTTCCTAAAG 646 Query 638 GATACGGTCCTCTATT-CAGCCTTCCATAT-AGTCATC-CAGATGAATTTATCAGAACC- 693 | ||||||||| | || ||||||||| | | | ||| | | |||||||| || | || Sbjct 647 GGTACGGTCCTGT-TTACAGCCTTCC-TTTCACTCA-CTCTGATGAATTCAT-TG-GCCG 701 Query 694 -TACGAATCTCCAATTC-TCAAGGAGAGAATGTTCTGTTTCTCATCAGAAACCATAAGAA 751 | |||||| || || | ||||||||||| ||| ||||||||| ||||| |||| | Sbjct 702 ATTCGAATCACC-GGTCTTGAAGGAGAGAATATTCCATTTCTCATCTGAAACAATAA-CA 759 Query 752 TGC-TT-AAAAC-AAGGGTCAACCAA-ATATGCGGAACAACCTCCATCTCATCTTTCCAA 807 | | || ||| | |||| | || ||| | |||| ||||||| | || || ||||| ||| Sbjct 760 T-CATTGAAATCAAAGGCT-AATCAAGA-ATGCAGAACAACAACTATTTCTTCTTTTCAA 816 Query 808 TCGCTAACCGCGGTTATATGGAGATGCATAACAAGGGCGAGGAGATTACC-TCTCGATCG 866 || |||| || ||||||||||||| || ||||| || || | |||||| | | |||| Sbjct 817 GCGTTAACTGCATTTATATGGAGATGTATCACAAGAGCAAGAAAATTACCTTAT-GATC- 874 Query 867 A-GAAACAAGTTGTAGAGTTGCTGCTGACAACAGAGGAAGAA-TGTATCCACCGCTT-CA 923 | |||| ||||||| |||| ||| |||| || || || || ||||||| || | Sbjct 875 ATGAAATTCGTTGTAGCCTTGCCGCTAACAATGGAACAA-AATTGGATCCACC-ATTGC- 931 Query 924 CAAGGA-TTACTTCGGAAACTGCCTCTCTGCT-T--TG-AGAACGGCTGCAAAAGCTGGT 978 | || || || || || || | |||||| | | ||| | | | | | | || Sbjct 932 CTTTGAGCTATTTTGGTAATTGTATTTCTGCTATAAAGTCGAA-GACCGTTACATCCAGT 990 Query 979 GAACTATTGGAGAATGATCTT-GGATTTGCTGCTTTGAAAGTGCATCAAGCAGTAG-CT- 1035 || ||| | || |||||| || |||| |||||||||||| ||||| |||| || | | Sbjct 991 GAGCTACTAGAAAATGAT-TTGGGATGGGCTGCTTTGAAAATGCATAAAGCTGT-GATTG 1048 Query 1036 GAACATACGAGCGAAAAGGTATC-TCAAATGATTGATCAA-TGGCT-AAAGTC-TCCTTA 1091 ||| | || || ||| |||| || | | || || || ||| | ||| || | |||| Sbjct 1049 GAA-ACACTAGTGAAGAGGTCTCGGC-GACAATCGA-AAATTGGATGAAA-TCAT-CTTA 1103 Query 1092 TATTTACCATATT-GATCGGCTATTT-GAACCGAT-GAGCGTT-ATGATGGGAAGCTCGC 1147 | ||| |||| || || ||| ||| | | | || | | ||| | || |||||||||| Sbjct 1104 TGTTTTCCAT-TTAGAAAAGCT-TTTGGGAGCAATGGTG-GTTCA-CATTGGAAGCTCGC 1159 Query 1148 CGAGGTTTAATAAGTATGGTTGTGAATTTGGGTTGGGAAAAG-GAG-TGACGCTTAGAAG 1205 |||||||||| | ||||| || || |||||| ||||||||| | | || || ||||||| Sbjct 1160 CGAGGTTTAAGATGTATGAATGCGAGTTTGGGATGGGAAAAGCG-GTTG-CGGTTAGAAG 1217 Query 1206 TGGCTATGCGCATAAGTTCGAT-GGAAAGGTATCTGCTTACCCGGGAAGAGAAGGAGGGG 1264 || |||| | |||||| ||| ||||| |||| ||||| | |||||||||||||| | Sbjct 1218 CGGTTATGGGGGTAAGTTTGATGGGAAA-ATATCAGCTTATGCAGGAAGAGAAGGAGGAG 1276 Query 1265 GAAGTATAGATTTGGAGGTATGTCTTGTTCCAGAGTTTATGGAAGCTTTGGAATCAGATG 1324 |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1277 GAAGCATAGATTTGGAAGTATGTCTACTTCCAGAGTTTATGGAAGCTTTGGAATCAGATG 1336 Query 1325 AAGAGTTCATGTC 1337 ||||||| ||||| Sbjct 1337 AAGAGTTTATGTC 1349 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54811862555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5