BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42850.1 Length=753 Score E Sequences producing significant alignments: (Bits) Value Ahg948944 jgi|Araly1|948944|scaffold_800831.1 599 1e-170 Ahg938873 jgi|Araly1|938873|scaffold_503064.1 198 4e-50 > Ahg948944 jgi|Araly1|948944|scaffold_800831.1 Length=449 Score = 599 bits (324), Expect = 1e-170 Identities = 402/440 (91%), Gaps = 4/440 (1%) Strand=Plus/Plus Query 33 GTCGGagaagaagaagaagaaagaTGACGTTGAAGAAGGTGGACGCGAATCCATCAACCT 92 ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 1 GTCGGAGAAGAAGAAGAAGAACGATGACGTTGAAGAAGCTGGACGCGAATCCATCAACCC 60 Query 93 TGGAATC-GAGTTTACAAGAACTGAAATCAGACGAAA-CAAGCCGTAGCAAGATCAATTT 150 | ||||| | | || || || ||||||| ||||||| | | ||||||||||||||||| Sbjct 61 TAGAATCGGCG-TTGGAACAATTGAAATCGGACGAAACCTA-TCGTAGCAAGATCAATTT 118 Query 151 CATACTCTTCCTCGCCGACAATGATCCCACCACCGGTCAAAGCTGGTGTCCAGACTGTGT 210 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 119 CATACTCTTCCTCGCCGACAACGATCCCACCACCGGTCAAAGCTGGTGTCCAGACTGTGT 178 Query 211 TAGAGCTGAACCTGTGATTTACAAGACTCTAGAGGAATTTCCAGAGGAGGTGAAGCTAAT 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 179 TAGAGCTGAACCTGTGATTTACAAGACTCTAGAGGAATTTCCAGAGGAGGTGAATCTTAT 238 Query 271 TCGTGCTTACGCCGGAGACAGACCGACGTGGCGGACTCCGGCGCATCCTTGGAGAGTTGA 330 |||||| ||||||||||| |||||||||||| || |||||| |||||| |||||||| || Sbjct 239 TCGTGCATACGCCGGAGATAGACCGACGTGGAGGGCTCCGGGGCATCCGTGGAGAGTCGA 298 Query 331 TTCTCGGTTTAAACTAACCGGAGTACCAACTCTTGTTCGTTGGGATGGTGACTCTGTTAA 390 | | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 299 TCCACGGTTTAAGCTAACCGGAGTACCAACTCTTGTTCGTTGGGATGGTGACGCTGTTAA 358 Query 391 AGGACGTCTTGAAGATCATCAAGCTCACCTTCCTCACTTGATTCTTCCCCTTCTTGCACC 450 ||||| ||||| ||||||||||||||| ||||||||||||| || ||||||||||| || Sbjct 359 GGGACGGCTTGAGGATCATCAAGCTCACATTCCTCACTTGATCCTGCCCCTTCTTGCGCC 418 Query 451 ATCCACTTGATTTGATCGAT 470 ||| |||||||||||||||| Sbjct 419 ATCGACTTGATTTGATCGAT 438 > Ahg938873 jgi|Araly1|938873|scaffold_503064.1 Length=448 Score = 198 bits (107), Expect = 4e-50 Identities = 164/190 (86%), Gaps = 9/190 (5%) Strand=Plus/Plus Query 281 GCCGGAGACAGACCGACGTGGCGGACTCCGGCGCATCCTTGGAGAGTTGATTCTCGGTTT 340 ||||| ||||||||| ||||| | |||||| ||||| | ||||||||||||||||||||| Sbjct 255 GCCGGTGACAGACCGGCGTGGAGAACTCCGACGCATTCGTGGAGAGTTGATTCTCGGTTT 314 Query 341 AAACTAACCGGAGTACCAACTCTTGTTCGTTGGGATGGTGACTCTGTTAAAGGACGTCTT 400 || || | |||||| ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 315 AAGCTCATCGGAGTGCCAACTCTTGTTCGTTGGGATGGTGACTCTGTTAAGGGACGGCTT 374 Query 401 GAAGATCATCAAGCTCACCTTCCTCACTTGATTCTTCCCCTTCTTGCACCATCCACTTGA 460 || ||||||||||||||||| |||||| ||||||||||| |||||||||||| Sbjct 375 GAGGATCATCAAGCTCACCT---------GATTCTGCCCCTTCTTGCGCCATCCACTTGA 425 Query 461 TTTGATCGAT 470 || ||||||| Sbjct 426 TTCGATCGAT 435 Score = 124 bits (67), Expect = 7e-28 Identities = 69/70 (99%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 134 CGTAGCAAGATCAATTTCATACTCTTCCTCGCCGACAATGATCCCACCACCGGTCAAAGC 193 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 CGTAGCAAGATCAGTTTCATACTCTTCCTCGCCGACAATGATCCCACCACCGGTCAAAGC 245 Query 194 TGGTGTCCAG 203 |||||||||| Sbjct 246 TGGTGTCCAG 255 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27753483576 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5