BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42980.1
Length=716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948913 jgi|Araly1|948913|scaffold_800800.1 638 0.0
Ahg922950 jgi|Araly1|922950|scaffold_104231.1 279 1e-74
> Ahg948913 jgi|Araly1|948913|scaffold_800800.1
Length=519
Score = 638 bits (345), Expect = 0.0
Identities = 477/537 (89%), Gaps = 23/537 (4%)
Strand=Plus/Plus
Query 149 AACACAGAGAAG--A-GAAAATGGCCGCAGAAGGAGAAGTTATCGCTTGCCACACCGTTG 205
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AACACAGAGAAGAAACAAAAATGGCCGCAGAAGGAGAAGTTATCGCTTGCCACACCGTCG 60
Query 206 AAGATTGGACCGAGAAGCTCAAAGCCGCCAACGAATCCAAGAAACTGATTGTGATAGACT 265
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AAGAATGGACCGAGAAGCTCAAAGCCGCCAACGAATCCAAGAAACTGATTGTGATCGACT 120
Query 266 TCACTGCAACATGGTGCCCACCTTGCCGTTTCATTGCACCCGTCTTTGCTGACTTAGCCA 325
||||||||||||||||||||||||||||||||||||||||| |||||| ||| || ||||
Sbjct 121 TCACTGCAACATGGTGCCCACCTTGCCGTTTCATTGCACCCATCTTTGTTGAGTTGGCCA 180
Query 326 AGAAGCACCTCGACGTAGTCTTCTTCAAGGTCGATGTTGACGAATTGAACACTGTTGCTG 385
|||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct 181 AGAAGCACCTAGACGTGGTGTTCTTCAAGGTTGATGTAGACGAATTGAACACTGTTGCTA 240
Query 386 AGGAGTTTAAAGTTCAGGCAATGCCAACGTTTATCTTCATGAAAGAAGGAGAGATCAAGG 445
|||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 AGGAATTTGACGTTCAGGCAATGCCAACGTTTATCTTCATGAAAGAAGGAGAGGTCAAGG 300
Query 446 AGACTGTGGTTGGTGCTG-CTAAAGAAGAAATCATTGCCAATCTCGAGAAGCACAAGACA 504
| || |||||||| |||| | ||||| |||||||||||||| ||| |||||||| |
Sbjct 301 ATACCGTGGTTGGAGCTGAC-AAAGATGAAATCATTGCCAAGCTCCTGAAGCACACTA-- 357
Query 505 GTTGTTGCTGCTGCTTGATTTGCTTTTCTCTCTTACCTATTTTGCTAAAATATGTTTGGT 564
| ||||||||||||||||| ||||| ||||||| ||||| ||||||||| |||||||
Sbjct 358 GC-GTTGCTGCTGCTTGATTCGCTTT-CTCTCTT-CCTATGTTGCTAAAAC--GTTTGGT 412
Query 565 GTTTTAATAAATCCTTTGTTCGCCCGAGTCTTTTCACCTTAAATGTGCTCTTATGTGTGG 624
|||||||||||||||| ||||||| |||||||| |||||| |||||||| ||||||||
Sbjct 413 GTTTTAATAAATCCTT-GTTCGCCAGAGTCTTT-CACCTTGCTTGTGCTCT-ATGTGTGG 469
Query 625 TGGTGAATAAATGTTGTTGCAAACTTGAT-TACTCGCAGCTATGCTAATTGTTCGTT 680
|| ||||||||||| |||||| ||| | ||||||||||||||||||||||||
Sbjct 470 TG---AATAAATGTTG---CAAACTCGATATG-TCGCAGCTATGCTAATTGTTCGTT 519
> Ahg922950 jgi|Araly1|922950|scaffold_104231.1
Length=397
Score = 279 bits (151), Expect = 1e-74
Identities = 264/318 (83%), Gaps = 10/318 (3%)
Strand=Plus/Plus
Query 165 AATGGCCGCAGAAGGAGAAGTTATCGCTTGCCACACCGTTGAAGATTGGACCGAGAAGCT 224
|||||||| |||||||||||| ||||||||||||||| | |||| ||||| ||||||| |
Sbjct 20 AATGGCCGGAGAAGGAGAAGTGATCGCTTGCCACACCCTCGAAGTTTGGAACGAGAAGGT 79
Query 225 CAAAGCCGCCAACGAATCCAAGAAACTGATTGTGATAGACTTCACTGCAACATGGTGCCC 284
|||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 80 TAAAGAAGCCAACGAATCCAAGAAACTGATTGTGATAGACTTCACAGCATCATGGTGTCC 139
Query 285 ACCTTGCCGTTTCATTGCACCCGTCTTTGCTGACTTAGCCAAGAAG--CACCTCGACGTA 342
|||||||||||||||||| ||||| ||||| ||| | || |||||| ||| | | ||
Sbjct 140 ACCTTGCCGTTTCATTGCCCCCGTATTTGCAGACATGGCTAAGAAGTTCAC-TA-ATGTT 197
Query 343 GTCTTCTTCAAGGTCGATGTTGACGAATTG-AACACTGTTGCTGAGGAGTTTAAAGTTCA 401
||||||||||| |||||||||| |||||| || | ||||||| |||| || |||||| |
Sbjct 198 TTCTTCTTCAAGATCGATGTTGATGAATTGCAAGA-TGTTGCTAAGGAATTCAAAGTTGA 256
Query 402 GGCAATGCCAACGTTTATCTTCATGAAAGAAGG-AGAGATCAAGGAGAC-TGTGGTTGGT 459
||||||||| || ||| | |||||||||||||| | | ||| || | ||| || |||
Sbjct 257 GGCAATGCCTACTTTTGTTTTCATGAAAGAAGGCA-ACATCGTTGAT-CGTGTTGTCGGT 314
Query 460 GCTGCTAAAGAAGAAATC 477
||||| ||||| || |||
Sbjct 315 GCTGCGAAAGATGAGATC 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26342935647
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5