BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G42990.1

Length=789
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948912 jgi|Araly1|948912|scaffold_800799.1                        854    0.0  


> Ahg948912 jgi|Araly1|948912|scaffold_800799.1
Length=526

 Score =  854 bits (462),  Expect = 0.0
 Identities = 490/504 (97%), Gaps = 0/504 (0%)
 Strand=Plus/Plus

Query  67   tctctctTTGTCTCCGCCATGACAAGCTCTTCATCTCCTTCACGCAAGGCGTTAAGCAAG  126
            ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  3    TCTGTCTTCGTCTCCGCCATGACTAGCTCTTCATCTCCTTCACGCAAGGCGTTAAGCAAG  62

Query  127  ATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGGCAAGTAAATCCACCGACTGGG  186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   ATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGGCAAGTAAATCCACCGACTGGG  122

Query  187  TTTAAGCACAGAGTTACTGATAATCTTCAAAAATGGGTAATTGAGGTAACAGGAGCACCT  246
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  123  TTTAAGCACAGAGTTACTGATAATCTTCAAAAATGGGTAATTGAGGTAACGGGAGCACCT  182

Query  247  GGTACGCTTTACGCTAATGAAACTTATAATCTTCAGGTTGAGTTTCCTCAACATTATCCT  306
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  183  GGTACGCTTTACGCTAATGAAACTTATAATCTTCAGGTTGAGTTTCCTCAACATTACCCT  242

Query  307  ATGGAAGCTCCTCAGGTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTACAGC  366
            ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct  243  ATGGAAGCTCCTCAGGTGATTTTTGTTCCACCAGCACCACTACATCCTCATATTTACAGC  302

Query  367  AATGGACATATTTGTTTAGATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGT  426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  303  AATGGACATATTTGTTTAGATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGT  362

Query  427  TCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGCAACGCCCGACT  486
            ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct  363  TCAGTCTGCATCAGCATTCTCTCGATGCTATCGAGTTCACCCGAAAAGCAACGCCCGACT  422

Query  487  GATAACGATCGATATGTGAAGAACTGCAAGAACGGGAGGTCTCCTAAAGAGACAAGGTGG  546
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  423  GATAATGATCGATATGTGAAGAACTGCAAGAACGGGAGGTCTCCTAAAGAGACAAGGTGG  482

Query  547  TGGTTCCATGACGACAAGGTTTAA  570
            |||||||| ||||||||||| |||
Sbjct  483  TGGTTCCACGACGACAAGGTATAA  506



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29125908588


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5