BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42990.1 Length=789 Score E Sequences producing significant alignments: (Bits) Value Ahg948912 jgi|Araly1|948912|scaffold_800799.1 854 0.0 > Ahg948912 jgi|Araly1|948912|scaffold_800799.1 Length=526 Score = 854 bits (462), Expect = 0.0 Identities = 490/504 (97%), Gaps = 0/504 (0%) Strand=Plus/Plus Query 67 tctctctTTGTCTCCGCCATGACAAGCTCTTCATCTCCTTCACGCAAGGCGTTAAGCAAG 126 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3 TCTGTCTTCGTCTCCGCCATGACTAGCTCTTCATCTCCTTCACGCAAGGCGTTAAGCAAG 62 Query 127 ATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGGCAAGTAAATCCACCGACTGGG 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 ATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGGCAAGTAAATCCACCGACTGGG 122 Query 187 TTTAAGCACAGAGTTACTGATAATCTTCAAAAATGGGTAATTGAGGTAACAGGAGCACCT 246 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 123 TTTAAGCACAGAGTTACTGATAATCTTCAAAAATGGGTAATTGAGGTAACGGGAGCACCT 182 Query 247 GGTACGCTTTACGCTAATGAAACTTATAATCTTCAGGTTGAGTTTCCTCAACATTATCCT 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 183 GGTACGCTTTACGCTAATGAAACTTATAATCTTCAGGTTGAGTTTCCTCAACATTACCCT 242 Query 307 ATGGAAGCTCCTCAGGTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTACAGC 366 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 243 ATGGAAGCTCCTCAGGTGATTTTTGTTCCACCAGCACCACTACATCCTCATATTTACAGC 302 Query 367 AATGGACATATTTGTTTAGATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 AATGGACATATTTGTTTAGATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGT 362 Query 427 TCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGCAACGCCCGACT 486 ||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||| Sbjct 363 TCAGTCTGCATCAGCATTCTCTCGATGCTATCGAGTTCACCCGAAAAGCAACGCCCGACT 422 Query 487 GATAACGATCGATATGTGAAGAACTGCAAGAACGGGAGGTCTCCTAAAGAGACAAGGTGG 546 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 GATAATGATCGATATGTGAAGAACTGCAAGAACGGGAGGTCTCCTAAAGAGACAAGGTGG 482 Query 547 TGGTTCCATGACGACAAGGTTTAA 570 |||||||| ||||||||||| ||| Sbjct 483 TGGTTCCACGACGACAAGGTATAA 506 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29125908588 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5