BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43150.1 Length=573 Score E Sequences producing significant alignments: (Bits) Value Ahg948884 jgi|Araly1|948884|scaffold_800771.1 433 8e-121 > Ahg948884 jgi|Araly1|948884|scaffold_800771.1 Length=318 Score = 433 bits (234), Expect = 8e-121 Identities = 279/300 (93%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 46 tctctACACTTTCATCTAATGGCCGGCCTGAGATGGAGAGAGTGGTGGAACACGATGGCC 105 |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 TCTCTACACTTTGATCTAATGGCCGGCCTAAGATGGAGAGAGTGGTGGAACACGATGGCC 62 Query 106 TTCCCCACCCGGCGTATCTGGAATCGTTTCACCGTTCGCGTCGGGTTTCGACACAGCGGA 165 |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 63 TTCCCCACCCGGCGCATCTGGAATCGTTTCACCGTTCGGGTCGGGTTTCGACATAGCGGA 122 Query 166 CTTTTGAGGTTAGAACATGACGTGAGTTCTTGCGAGTATGAAGACATACACATAATGTGG 225 || ||||||||| || | |||||||||||||||||||| ||||||||||||||||||||| Sbjct 123 CTCTTGAGGTTACAAAACGACGTGAGTTCTTGCGAGTACGAAGACATACACATAATGTGG 182 Query 226 AATTTGTTACACAAGAATGAAGATCTTACACG--C-GTACCAATCcaacaacaacaacaa 282 ||| ||||||||||||| |||||||||||||| | | |||||||||||||||||||||| Sbjct 183 AATCTGTTACACAAGAACGAAGATCTTACACGTACCGCACCAATCCAACAACAACAACAA 242 Query 283 caGAGGAAGAAACCTTGTTGGAATCTTCTTGGTTCGTATCTTTGCCAAAGATTCTGATCC 342 || | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 243 -AG-G-AAGAAACCTTGCTGGAATCTTCTTGGTTCATATCTTTGCCAAAGATTCTGATCC 299 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20947418361 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5