BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G43150.1

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948884 jgi|Araly1|948884|scaffold_800771.1                        433    8e-121


> Ahg948884 jgi|Araly1|948884|scaffold_800771.1
Length=318

 Score =  433 bits (234),  Expect = 8e-121
 Identities = 279/300 (93%), Gaps = 6/300 (2%)
 Strand=Plus/Plus

Query  46   tctctACACTTTCATCTAATGGCCGGCCTGAGATGGAGAGAGTGGTGGAACACGATGGCC  105
            |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  3    TCTCTACACTTTGATCTAATGGCCGGCCTAAGATGGAGAGAGTGGTGGAACACGATGGCC  62

Query  106  TTCCCCACCCGGCGTATCTGGAATCGTTTCACCGTTCGCGTCGGGTTTCGACACAGCGGA  165
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  63   TTCCCCACCCGGCGCATCTGGAATCGTTTCACCGTTCGGGTCGGGTTTCGACATAGCGGA  122

Query  166  CTTTTGAGGTTAGAACATGACGTGAGTTCTTGCGAGTATGAAGACATACACATAATGTGG  225
            || ||||||||| || | |||||||||||||||||||| |||||||||||||||||||||
Sbjct  123  CTCTTGAGGTTACAAAACGACGTGAGTTCTTGCGAGTACGAAGACATACACATAATGTGG  182

Query  226  AATTTGTTACACAAGAATGAAGATCTTACACG--C-GTACCAATCcaacaacaacaacaa  282
            ||| ||||||||||||| ||||||||||||||  | | ||||||||||||||||||||||
Sbjct  183  AATCTGTTACACAAGAACGAAGATCTTACACGTACCGCACCAATCCAACAACAACAACAA  242

Query  283  caGAGGAAGAAACCTTGTTGGAATCTTCTTGGTTCGTATCTTTGCCAAAGATTCTGATCC  342
             || | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  243  -AG-G-AAGAAACCTTGCTGGAATCTTCTTGGTTCATATCTTTGCCAAAGATTCTGATCC  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20947418361


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5