BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G43260.1

Length=706
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948855 jgi|Araly1|948855|scaffold_800742.1                        521    2e-147


> Ahg948855 jgi|Araly1|948855|scaffold_800742.1
Length=335

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 320/338 (95%), Gaps = 3/338 (1%)
 Strand=Plus/Plus

Query  76   TCTCTCTTATTGAAACCAACAATGAGTCCGATCGTCATAACCCAGTTAGCTACAGGAATC  135
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||  | 
Sbjct  1    TCTCTCTTCTTGAAACCAACAATGAGTCCGATCGTCATAACCCAGTTAGCCACAGGTCTA  60

Query  136  AGCGTTTTAGCCGGTGCGGTCTTTATCAAATCAGTCATGGACCAAAAGCCTATGGCTGGT  195
            |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct  61   AGCGTTTTAGCCGGTGCGGTCTTTATCAAATCGGTCTTGGACCAAAAACCTATGGCTGGT  120

Query  196  CAATTCCCTCGTTGTCCGACTTGTAACGGTACTGGACGAGTCACGTGTTTCTGTTCTCGA  255
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  121  CAATTCCCTCGTTGTCCGACTTGTAACGGTACGGGACGAGTCACGTGTTTCTGTTCTCGT  180

Query  256  TGGTCCGATGGTGACGTTGGATGTCGTAGGTGTTCTGGTTCAGGTCGTGCGGCTTGTAGC  315
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TGGTCTGATGGCGACGTTGGATGTCGTAGGTGTTCTGGTTCAGGTCGTGCGGCTTGTAGC  240

Query  316  AATTGTGGTGGTTCTGGAACTGGTAGACCTTTACCGGCTCAGATTACGGTTCAGCCACCG  375
            |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  241  AATTGTGGTGGTTCTGGAACCGGTAGACCTTTACCGGCTCAGATTACGGTTCAACCACCG  300

Query  376  AATCGTCCTTATTGATGATTCTCAAGAAATTTGTATAC  413
            ||||||||||||||||  | |||||||||||||| |||
Sbjct  301  AATCGTCCTTATTGAT--T-CTCAAGAAATTTGTTTAC  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25961706477


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5