BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43260.1 Length=706 Score E Sequences producing significant alignments: (Bits) Value Ahg948855 jgi|Araly1|948855|scaffold_800742.1 521 2e-147 > Ahg948855 jgi|Araly1|948855|scaffold_800742.1 Length=335 Score = 521 bits (282), Expect = 2e-147 Identities = 320/338 (95%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 76 TCTCTCTTATTGAAACCAACAATGAGTCCGATCGTCATAACCCAGTTAGCTACAGGAATC 135 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1 TCTCTCTTCTTGAAACCAACAATGAGTCCGATCGTCATAACCCAGTTAGCCACAGGTCTA 60 Query 136 AGCGTTTTAGCCGGTGCGGTCTTTATCAAATCAGTCATGGACCAAAAGCCTATGGCTGGT 195 |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| Sbjct 61 AGCGTTTTAGCCGGTGCGGTCTTTATCAAATCGGTCTTGGACCAAAAACCTATGGCTGGT 120 Query 196 CAATTCCCTCGTTGTCCGACTTGTAACGGTACTGGACGAGTCACGTGTTTCTGTTCTCGA 255 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 121 CAATTCCCTCGTTGTCCGACTTGTAACGGTACGGGACGAGTCACGTGTTTCTGTTCTCGT 180 Query 256 TGGTCCGATGGTGACGTTGGATGTCGTAGGTGTTCTGGTTCAGGTCGTGCGGCTTGTAGC 315 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGGTCTGATGGCGACGTTGGATGTCGTAGGTGTTCTGGTTCAGGTCGTGCGGCTTGTAGC 240 Query 316 AATTGTGGTGGTTCTGGAACTGGTAGACCTTTACCGGCTCAGATTACGGTTCAGCCACCG 375 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 241 AATTGTGGTGGTTCTGGAACCGGTAGACCTTTACCGGCTCAGATTACGGTTCAACCACCG 300 Query 376 AATCGTCCTTATTGATGATTCTCAAGAAATTTGTATAC 413 |||||||||||||||| | |||||||||||||| ||| Sbjct 301 AATCGTCCTTATTGAT--T-CTCAAGAAATTTGTTTAC 335 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25961706477 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5