BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43270.2 Length=1621 Score E Sequences producing significant alignments: (Bits) Value Ahg948853 jgi|Araly1|948853|scaffold_800740.1 1810 0.0 > Ahg948853 jgi|Araly1|948853|scaffold_800740.1 Length=1327 Score = 1810 bits (980), Expect = 0.0 Identities = 1225/1334 (92%), Gaps = 54/1334 (4%) Strand=Plus/Plus Query 122 TTTGGTGGTCA--GTGTCTGATGGAGTGTAATGCA-AAGCCACCGTTTCAATGGGAATTG 178 ||||||||||| ||||| |||||||||||||| | |||||| ||||||||||||||||| Sbjct 1 TTTGGTGGTCAGTGTGTCGGATGGAGTGTAATG-AGAAGCCATCGTTTCAATGGGAATTG 59 Query 179 GAAAACTTGATATCTTTTGGCACTTCTA-CAGCTGAAGTTCCTAGAAAGCTAAAACCAAT 237 ||||| |||||||||||||| ||||| | |||||||| |||||||||||||||||||||| Sbjct 60 GAAAATTTGATATCTTTTGGTACTTC-ATCAGCTGAAATTCCTAGAAAGCTAAAACCAAT 118 Query 238 GGAGTGGGAAATTGATGGATTTGATTGCACCTCTCTGTATTCTTCAAGC-TT--TGC--- 291 |||||||||||||||||| |||||||||||||||||||||||||||||| || ||| Sbjct 119 GGAGTGGGAAATTGATGGGTTTGATTGCACCTCTCTGTATTCTTCAAGCTTTGCTGCAGT 178 Query 292 --C-TATGCTGGTAGTTCAGGTTCTGATATAGCTCATGCTTTCTCTAAAAGCTCAAAGTC 348 | |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 179 AGCTTATGGTGGTAGTTCAGGTTCTGATCTAGCTAATGCTTTCTCTAAAAGCTCAAAGTC 238 Query 349 AACTTCCATTAGCTCTTCATCAGCTGAAGTAAGAACACACAATTTTACATCCGAAACTGG 408 || | ||| ||||||||||||||||| |||||||| ||||||||||| ||| |||| Sbjct 239 AA----C--TAGTTCTTCATCAGCTGAAGTGAGAACACATAATTTTACATCAGAAGCTGG 292 Query 409 TGAAAGTCTTCC--------T--G--G-A--G-A-A-TTTGCAAAGGGGATTGATACTTC 450 |||||||||||| | | | | | | | ||||||||||| ||||||||||| Sbjct 293 TGAAAGTCTTCCTGGAGAATTAGGCAGCAGTGAAGAGTTTGCAAAGGGAATTGATACTTC 352 Query 451 TCCAAGTCTTGAACTTTCTTTTGGCTCTGGTGATCCGGTTCTCGGTTTAAAGCTTGGTAA 510 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 353 TCCAAGTCTTGAACTTTCTTTTGGCTCTGGTGATCCAGTTCTCGGTTTAAAGCTTGGTAA 412 Query 511 ACGAACGTACTTTGAAGACTTTTGGGAAGTGGAGAATGCTAAAGGTTTGGGACTTCCAGT 570 |||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 413 ACGAACTTACTTTGAAGACTTTTGGGAAGTGGAAAATGCGAAAGGTTTGGGACTTCCAGT 472 Query 571 GA-CTCTGGCTTCATCTTCTGTTTCTCCCGTGAAGAAATCGAAATCCATTCCTCAGAGGT 629 || | || ||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 473 GAGC-CTTGCTTCGTCTTCTGTTTCTCCGGTGAAGAAATCGAAATCCATTCCTCAGAGGT 531 Query 630 TACAAACTCCTCACTGTCAAGTTGAAGGCTGTAATCTTGATCTTTCATCAGCTAAAGACT 689 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 532 TACAAACTCCTCACTGTCAAGTTGAAGGCTGTAATCTCGATCTCTCATCAGCTAAAGACT 591 Query 690 ATCATCGGAAACATAGGATTTGTGAAAATCATTCAAAGTTTCCTAAAGTCGTTGTGAGTG 749 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 592 ATCATCGGAAACACAGGATTTGTGAAAACCATTCAAAGTTTCCTAAAGTCGTTGTGAGTG 651 Query 750 GCGTAGAGCGTCGGTTCTGCCAACAATGTAGCAGGTTCCACTGTCTCTCTGAGTTTGATG 809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 GCGTAGAGCGTCGGTTCTGCCAACAATGTAGCAGGTTCCACTGTCTCTCTGAGTTTGATG 711 Query 810 AGAAGAAACGTAGCTGTCGCCGACGTCTCTCAGATCACAATGCAAGACGTCGCAAGCCAA 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 AGAAGAAACGTAGCTGTCGCCGACGTCTCTCAGATCACAATGCAAGACGTCGCAAGCCAA 771 Query 870 ATCCTGGAAGGACATATGATGGGAAACCACAGGTGGATTTTGTATGGAACAGATTTGCAC 929 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 ATCCTGGGAGGACATATGATGGGAAACCACAGGTGGATTTTGTATGGAACAGATTTGCAC 831 Query 930 TTATCCATCCAAGAAGTGAGGAAAAGTTTATATGGCCAAGTTCGAAGCACGTACCATCAA 989 ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 832 TTATCCATCCAAGAAGTGAGGAAAAGTTTCTATGGCCAAGTTCGAAGCCCGTACCATCAA 891 Query 990 GAGTGTTAATGCCGCAACCTGCAAAGACTGAGATTTCCGATA--C----C---GAGCACA 1040 ||| ||||||| |||||||||||||||| |||| |||| ||| | | ||||||| Sbjct 892 GAGGGTTAATGTCGCAACCTGCAAAGACCGAGACTTCCAATAAGCTGTTCACCGAGCACA 951 Query 1041 ATAGATTTGGATTGTTGGACCCCAAAACCAAAACCGCAAGAGCCGAGTTATTCAGTAAAG 1100 |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 952 GTAGATTTGGATTGTTGGACCCCAAAACCAAAACCGCAAGAACCGAGTTATTCAATAAAG 1011 Query 1101 AAAAGGTCACAATCTCTTCACACATGGGTGCTTCTCAAGATCTTGATGGTGCTCTCTCTC 1160 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1012 AAAAGGTCACAATCTCTTCACACATGGGTACTTCTCAAGATCTTGATGGTGCTCTCTCTC 1071 Query 1161 TTCTGTCAAATTCAACAACATGGGTTTCTTCCTCTGACCAACCAAGGCGTTTTACCCTTG 1220 ||||||||||||||||| |||||||||| | |||||||||||||| ||||||||||||| Sbjct 1072 TTCTGTCAAATTCAACATCATGGGTTTC--C-TCTGACCAACCAAGACGTTTTACCCTTG 1128 Query 1221 ATCACCATCCCTCAAGCAACCTCCAACCCGTAGCTCACCGGTCTGCGGCTCAACTCAATT 1280 ||||||||||| |||||||||||||||| || ||| |||| |||||| |||||||||||| Sbjct 1129 ATCACCATCCCACAAGCAACCTCCAACCTGTGGCTAACCGTTCTGCGACTCAACTCAATT 1188 Query 1281 CAGTTTCCGGCTATTGGCAGCCGGACCCACCCGCAGTTGAAGGCCCGACCGCTCTGCATA 1340 | || |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| Sbjct 1189 CGGTGTCCGGCTATTGGCAGCCGGAACCACCAACAGTTGAGGGCCCGACCGCTCTGCATA 1248 Query 1341 GAAATGGGGTAGGCCAGTTTAATGAAAACTACTTCAGCTTGAACCAGTTTTATAACTGAA 1400 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1249 GAAACGGGGTAGGCCAGTTTAATGAAAACTGCTTCAGCTTGAACCAGTTTTATAACTGAA 1308 Query 1401 AATTGTATGCCTTT 1414 | | |||||||||| Sbjct 1309 AGT-GTATGCCTTT 1321 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60753940775 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5