BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43330.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494670 jgi|Araly1|494670|fgenesh2_kg.8__486__AT5G43330.1 1899 0.0
Ahg470418 jgi|Araly1|470418|fgenesh2_kg.1__372__AT1G04410.1 1062 0.0
> Ahg494670 jgi|Araly1|494670|fgenesh2_kg.8__486__AT5G43330.1
Length=1259
Score = 1899 bits (1028), Expect = 0.0
Identities = 1182/1253 (94%), Gaps = 24/1253 (2%)
Strand=Plus/Plus
Query 49 GCTCTCTCACTGATCAT---TCACAATCTC-TCTCtttttttCACCGGCGATAATTTTCC 104
||| || |||||||||| |||| ||||| ||| |||| ||||||||||||||||||||
Sbjct 23 GCT-TCACACTGATCATCAATCACGATCTCTTCTATTTTATTCACCGGCGATAATTTTCC 81
Query 105 GATCTCGATTATAAGATGGCGAAGGAACCAGTTCGTGTTCTTGTTACCGGAGCTGCAGGA 164
|||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 82 GATCTCGA-T-TAAGATGGCGAAGGAACCAGTCCGTGTTCTTGTTACCGGAGCTGCAGGA 139
Query 165 CAAATCGGATATGCTCTTGTTCCTATGATTGCAAGGGGGATAATGCTTGGTGCTGATCAG 224
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 140 CAAATCGGATATGCTCTTGTTCCTATGATTGCAAGGGGGATAATGCTTGGTGCAGACCAG 199
Query 225 CCTGTGATCCTCCACATGCTTGACATCCCTTTTGCAGCAGAAGCTTTGAACGGTGTGAAG 284
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 200 CCTGTGATCCTCCACATGCTTGATATCCCTCCGGCAGCAGAAGCTTTGAACGGTGTGAAA 259
Query 285 ATGGAATTGGTCGATGCTGCTTTCCCTCTTCT-AAAGGGTGTGGTGGCTACAACTGATGC 343
||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 260 ATGGAGTTGATCGATGCTGCTTTCCCTCTTCTGAAA-GGTGTGGTGGCTACAACTGATGC 318
Query 344 TGTTGAAGCG-TGTACCGGTGTTAATGTTGCTGTCATGGTTGGTGGTTTCCCGAGGAAGG 402
||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 319 CGTTGAAG-GATGTACCGGTGTTAATGTTGCTGTCATGGTTGGCGGTTTCCCGAGGAAGG 377
Query 403 AAGGAATGGAGAGGAAGGATGTTATGTCCAAGAACGTTTCCATTTACAAGTCTCAAGCTT 462
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 378 AAGGAATGGAGAGGAAGGATGTTATGTCGAAGAACGTTTCCATTTACAAGTCTCAAGCTG 437
Query 463 CTGCCTTGGAGAAGCATGCTGCACCAAACTGCAAGGTTCTGGTTGTTGCAAACCCTGCAA 522
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CTGCCTTGGAGAAGCATGCCGCACCAAACTGCAAGGTTCTGGTTGTTGCAAACCCTGCAA 497
Query 523 ACACCAATGCATTGATCCTGAAGGAATTTGCACCATCGATCCCAGAGAAGAACATTACTT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 ACACCAATGCATTGATCCTGAAGGAATTTGCACCATCGATCCCAGAGAAGAACATTACTT 557
Query 583 GCTTGACCAGGCTTGACCACAACAGGGCATTGGGACAAGTGTCTGAGAGGTTAAGCGTAC 642
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 558 GCTTGACCAGGCTTGACCACAACAGGGCATTGGGACAAGTCTCTGAGAGGTTAAGCGTAC 617
Query 643 CAGTGTCTGATGTGAAGAACGTGATTATCTGGGGAAACCACTCATCAACCCAATACCCAG 702
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CAGTGTCTGATGTCAAGAACGTGATTATCTGGGGAAACCACTCATCAACCCAATACCCAG 677
Query 703 ATGTCAACCACGCTACCGTTAAGACTTCCGT-TGGAGAGAAGCCAGTGCGTGAGCTAGTC 761
|||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 678 ATGTCAACCATGCTACCGTTAAGACTTCC-TCTGGAGAGAAGCCAGTGCGTGAGCTAGTC 736
Query 762 AAGAATGACGAGTGGTTGAATGGAGAGTTCATCTCTACCGTTCAACAACGTGGTGCTGCC 821
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 737 AAGAATGACGAGTGGTTGAATGGAGAGTTCATCTCTACCGTTCAACAACGTGGAGCTGCC 796
Query 822 ATTATCAAGGCCAGGAAGCTGTCTAGTGCACTTTCTGCAGCTAGCTCAGCTTGTGACCAT 881
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 797 ATTATCAAGGCCAGGAAACTGTCTAGTGCACTCTCTGCAGCTAGCTCTGCTTGTGACCAT 856
Query 882 ATCCGTGATTGGGTTGTTGGAACACCTGAGGGCACATTTGTTTCAATGGGAGTATACTCA 941
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 857 ATCCGTGATTGGGTCGTTGGAACACCCGAGGGCACATTTGTTTCAATGGGAGTATACTCA 916
Query 942 GATGGATCCTACAATGTTCCAGCTGGACTTATCTACTCCTTCCCCGTAACCTGCCGTAAT 1001
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 917 GATGGATCCTACAATGTTCCAGCTGGACTTATCTACTCTTTCCCCGTAACCTGCCGTAAT 976
Query 1002 GGAGAGTGGACCATTGTTCAAGGTTTACCGATTGATGACGCATCGAGGAAGAAGATGGAT 1061
||||||||||| |||||||||||||||||||| ||||| | ||| |||||||||||||||
Sbjct 977 GGAGAGTGGACTATTGTTCAAGGTTTACCGATCGATGAAGTATCAAGGAAGAAGATGGAT 1036
Query 1062 TTGACAGCAGAGGAGTTGAAGGAAGAGAAGGACCTCGCTTACTCATGCCTCTCTTAAACC 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TTGACAGCAGAGGAGTTGAAGGAAGAGAAGGACCTCGCTTACTCATGCCTCTCTTAAACC 1096
Query 1122 GGTCTTTTCTCAGCTGGTTTAATCAGTGAAAGCTTTGTTTCGAATAAAGAAGTTTTGTTA 1181
||| |||||||||| |||||||||||||| |||||||||| ||||||| |||||| | ||
Sbjct 1097 GGT-TTTTCTCAGCCGGTTTAATCAGTGAGAGCTTTGTTTTGAATAAAAAAGTTT-GCTA 1154
Query 1182 TAAAATGAACTTTTAATAA-CCTCATGAGCTTGAGGTTTAGTTTTCCTAATGTGCCCATG 1240
|||| ||||||||||||| |||| |||||||||||||||||||||||||| | | |
Sbjct 1155 TAAA--GAACTTTTAATAAACCTCTTGAGCTTGAGGTTTAGTTTTCCTAATTTTCG--T- 1209
Query 1241 ATGTGTCGGTACTGATTTGCTGACCAGATATAAACAATCATTTTGATAATTGA 1293
|||||| || ||||||||||||||| |||||||| |||| |||||||||||
Sbjct 1210 -TGTGTCAGTGCTGATTTGCTGACCA--TATAAACAGTCATATTGATAATTGA 1259
> Ahg470418 jgi|Araly1|470418|fgenesh2_kg.1__372__AT1G04410.1
Length=1432
Score = 1062 bits (575), Expect = 0.0
Identities = 890/1042 (85%), Gaps = 22/1042 (2%)
Strand=Plus/Plus
Query 89 CCGGCGATAATTTTCCGATCTCGATTATAAGATGGCGAAGGAACCAGTTCGTGTTCTTGT 148
|||||||||| | |||||||| | || |||||| || |||||||||||||| || ||
Sbjct 120 CCGGCGATAA-TCTCCGATCT---TGATCCGATGGCCAAAGAACCAGTTCGTGTACTCGT 175
Query 149 TACCGGAGCTGCAGGACAAATCGGATATGCTCTTGTTCCTATGATTGCAAGGGGGATAAT 208
|| ||||||||||| |||||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 176 CACTGGAGCTGCAGGGCAAATCGGATATGCTCTTGTCCCTATGATTGCCAGGGGTATCAT 235
Query 209 GCTTGGTGCTGATCAGCCTGTGATCCTCCACATGCTT-GACATCCCTTTTGCAGCAGAAG 267
|||||||||||| || ||||| || ||||||||| || || || ||| ||| || ||||
Sbjct 236 GCTTGGTGCTGACCAACCTGTTATTCTCCACATG-TTGGATATTCCTCCTGCTGCTGAAG 294
Query 268 CTTTGAACGGTGTGAAGATGGAATTGGTCGATGCTGCTTTCCCTCTTCT-AAAGGGTGTG 326
||||||||||||| |||||||| ||| |||||||||||||||||||||| ||| |||||
Sbjct 295 CTTTGAACGGTGTTAAGATGGAGTTGATCGATGCTGCTTTCCCTCTTCTCAAA-GGTGTT 353
Query 327 GTGGCTACAACTGATGCTGTTGAAGCG-TGTACCGGTGTTAATGTTGCTGTCATGGTTGG 385
|| |||||||||||||| |||| || | ||||| || || || |||||||| ||||||||
Sbjct 354 GTTGCTACAACTGATGCCGTTG-AGGGATGTACTGGAGTCAACGTTGCTGTTATGGTTGG 412
Query 386 TGGTTTCCCGAGGAAGGAAGGAATGGAGAGGAAGGATGTTATGTCCAAGAACGTTTCCAT 445
||||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||
Sbjct 413 TGGTTTCCCGAGGAAGGAAGGAATGGAGAGGAAGGATGTGATGTCCAAGAATGTCTCTAT 472
Query 446 TTACAAGTCTCAAGCTTCTGCCTTGGAGAAGCATGCTGCACCAAACTGCAAGGTTCTGGT 505
||||||||||| ||| |||| |||||||| ||||| || ||||||||||||||||| ||
Sbjct 473 CTACAAGTCTCAGGCTGCTGCATTGGAGAAACATGCCGCTCCAAACTGCAAGGTTCTTGT 532
Query 506 TGTTGCAAACCCTGCAAACACCAATGCATTGATCCTGAAGGAATTTGCACCATCGATCCC 565
||| || ||||| || || ||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 533 TGTGGCTAACCCCGCGAATACCAACGCATTGATCCTCAAGGAATTTGCGCCATCCATCCC 592
Query 566 AGAGAAGAACAT-TACTTGCTTGACCAGGCTTGACCACAACAGGGCATTGGGACA-AGTG 623
|| |||||||| | |||| ||||| |||||||||||||||||||||||||| || | |
Sbjct 593 TGAAAAGAACATCT-CTTGTTTGACAAGGCTTGACCACAACAGGGCATTGGGCCAGA-TC 650
Query 624 TCTGAGAGGTTAAGCGTACCAGTGTCTGATGTGAAGAACGTGATTATCTGGGGAAACCAC 683
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 651 TCTGAGAGGTTGAGCGTGCCAGTGTCTGATGTTAAGAACGTGATCATCTGGGGAAACCAC 710
Query 684 TCATCAACCCAATACCCAGATGTCAACCACGCTACCGTTAAGACTTCCGT-TGGAGAGAA 742
||||| | || ||||||||||||||||| |||| || |||| || | |||||||||
Sbjct 711 TCATCCTCACAGTACCCAGATGTCAACCATGCTAAAGTGCAGACCTCA-TCTGGAGAGAA 769
Query 743 GCCAGTGCGTGAGCTAGTCAAGAATGACG-AGTGGTTGAATGGAGAGTTCATCTCTACCG 801
||| || |||||||| |||||| | || | | |||||| | || || ||||||||||| |
Sbjct 770 GCCTGTCCGTGAGCTCGTCAAGGACGATGCA-TGGTTGGACGGGGAATTCATCTCTACAG 828
Query 802 TTCAACAACGTGGTGCTGCCATTATCAAGGCCAGGAAGCTGTCTAGTGCACTTTCTGCAG 861
||||||||||||| ||||| || |||||||| || ||| ||||||||||||||||||| |
Sbjct 829 TTCAACAACGTGGAGCTGCAATCATCAAGGCGAGAAAGTTGTCTAGTGCACTTTCTGCTG 888
Query 862 CTAGCTCAGCTTGTGACCATATCCGTGATTGGGTTGTTGGAACACCTGAGGGCACATTTG 921
||||||| ||||||||||| |||||||| ||||| ||||||| || ||||| || ||||
Sbjct 889 CTAGCTCTGCTTGTGACCACATCCGTGACTGGGTCCTTGGAACTCCAGAGGGTACGTTTG 948
Query 922 TTTCAATGGGAGTATACTCAGATGGATCCTACAATGTTCCAG-CTGGACTTATCTACTCC 980
|||| |||||||| ||||| ||||| || ||||| ||||| | | |||||||||||||||
Sbjct 949 TTTCCATGGGAGTGTACTCCGATGGCTCTTACAACGTTCC-GTCAGGACTTATCTACTCC 1007
Query 981 TTCCCCGTAACCTGCCGTAATGGAGAGTGGACCATTGTTCAAGGT-TTACCGATTGATGA 1039
||||| ||||| || || ||||||||||||| ||||| ||||| || |||||||||||
Sbjct 1008 TTCCCTGTAACTTGTCGCAATGGAGAGTGGAGTATTGTCCAAGGCCTT-CCGATTGATGA 1066
Query 1040 CGCATCGAGGAAGAAGATGGATTTGACAGCAGAGGAGTTGAAGGAAGAGAAGGACCTCGC 1099
| ||| ||||||||||||||||||||||| |||||| | ||||||||||||||| | ||
Sbjct 1067 AGTATCAAGGAAGAAGATGGATTTGACAGCGGAGGAGCTCAAGGAAGAGAAGGACTTGGC 1126
Query 1100 TTACTCATGCCTCTCTTAAACC 1121
|||||||||||||||||||||
Sbjct 1127 GTACTCATGCCTCTCTTAAACC 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5