BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43440.1 Length=1270 Score E Sequences producing significant alignments: (Bits) Value Ahg948815 jgi|Araly1|948815|scaffold_800702.1 1677 0.0 Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1 529 2e-149 Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447 499 2e-140 > Ahg948815 jgi|Araly1|948815|scaffold_800702.1 Length=1141 Score = 1677 bits (908), Expect = 0.0 Identities = 1060/1135 (93%), Gaps = 4/1135 (0%) Strand=Plus/Plus Query 35 aaaaaaCAAAACATCATGACAGAAAAATCTGCAGAACTCGTTCGTTTGAACGAACTCAAG 94 |||||| | |||||||||||||||||||| | |||| ||| |||||||||||| |||||| Sbjct 9 AAAAAATAGAACATCATGACAGAAAAATCCGGAGAAATCGGTCGTTTGAACGAGCTCAAG 68 Query 95 GCTTTTGTATCGAC-AAAAGCAGGTGTGAAAGGACTTGTCGATACCAAAATAACCGAAGT 153 |||||||| ||| | |||| |||| || |||||||| ||||||||||||||||||||||| Sbjct 69 GCTTTTGTCTCGTCGAAAA-CAGGAGTCAAAGGACTCGTCGATACCAAAATAACCGAAGT 127 Query 154 TCCTCGAATCTTCCATATCCCTTCTTCTTCAACTTTATCTAACAACAAACCTTCTGATAT 213 |||||||||||| ||| ||||||||||| | ||| ||||||||||||||||||||||||| Sbjct 128 TCCTCGAATCTTTCATGTCCCTTCTTCTACTACTATATCTAACAACAAACCTTCTGATAT 187 Query 214 CTTTGGCTTAAACCTCACTGTCCCAATCATTGACCTCGGAGATGGTAACACATCTGCTGC 273 || ||||||||||||||||||||||||| |||||||||||||| |||| |||| || | Sbjct 188 CTCCAGCTTAAACCTCACTGTCCCAATCATCGACCTCGGAGATGGCAACATATCTTCTAC 247 Query 274 AAGAAACGTCCTCGTTTCCAAGATTAAAGAAGCAGCTGAGAATTGGGGATTTTTCCAAGT 333 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 248 AAGAAACGTTCTCGTTTCGAAGATTAAAGAAGCAGCTGAGAATTGGGGATTTTTCCAAGT 307 Query 334 AATCAATCATGGTATTCCTTTAACTGTTCTTAAAGATATCAAACAAGGTGTTCGAAGATT 393 |||||||||||||| ||||| ||| ||||| |||| || |||||||| ||||||||||| Sbjct 308 GATCAATCATGGTATACCTTTGACTATTCTTGAAGAGATTAAACAAGGAGTTCGAAGATT 367 Query 394 TCATGAGGAAGATCCAGAGGTCAAGAAACAGTATTTTGCTACAGATTTCAATACAAGATT 453 |||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |||||| Sbjct 368 TCATGAAGAAGATCCAGAGATCAAGAAACAGTATTTTGCTAAAGATTTCAATAAAAGATT 427 Query 454 TGCTTACAACACCAACTTCGATATTCATTATTCTTCTCCTATGAATTGGAAAGACTCTTT 513 ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| Sbjct 428 TGCTTACAACACCAACTTCGATATTTATCATTCTTCTCCTATGAATTGGAGAGACTCTTT 487 Query 514 CACTTGCTACACTTGTCCTCAAGATCCTCTAAAGCCAGAGGAAATCCCACTAGCTTGCAG 573 |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 488 CACTTGTTACACTTGTGTTCAAGATCCTCTAAAGCCAGAGGAAATCCCACTAGCTTGCAG 547 Query 574 GGATGTTGTGATTGAATACTCGAAGCATGTAATGGAATTAGGAGGTTTACTCTTCCAACT 633 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 GGATGTTGTGATTGAATACTCGAAGCATGTAATGGAATTAGGAGGTTTACTCTTCCAACT 607 Query 634 TCTCTCAGAAGCTTTAGGTTTAGACTCTGAGATTCTTAAGAACATGGATTGTCTCAAGGG 693 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 608 TCTCTCAGAAGCTTTAGGTTTAGACTCTGAGATCCTTAAGAACATGGATTGTCTCAAGGG 667 Query 694 TTTGCTTATGCTCTGCCATTATTATCCACCTTGTCCACAACCTGACCTAACTTTGGGCAT 753 ||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||| Sbjct 668 TTTGCTTATGCTCTGCCATTACTATCCACCTTGCCCTCAGCCTGACCTAACTTTGGGCAT 727 Query 754 AAGTAAACACACCGACAATTCCTTCATAACAATTCTTCTTCAAGATCAAATCGGTGGTCT 813 |||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| Sbjct 728 AAGTAAACACACCGACAACTCTTTCATAACAATTCTTCTTCAAGACCAAATCGGTGGTCT 787 Query 814 TCAAGTTCTTCATCAAGATTCTTGGGTTGATGTAACTCCTGTTCCTGGAGCTCTTGTCAT 873 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 788 TCAAGTTCTTCATCAAGATTCTTGGGTAGATGTAACTCCTGTTCCTGGAGCTCTTGTCAT 847 Query 874 CAGTATCGGTGATTTCATGCAGCTGATCACAAACGATAAGTTCTTAAGTATGGAGCATAG 933 ||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 848 CAGCATCGGTGATTTCATGCAGCTGATCACGAACGATAAGTTCTTAAGCGTGGAGCATAG 907 Query 934 GGTACGGGCAAACAGAGATGGACCGCGGATTTCAGTTGCTTGCTTCGTTAGCTCGGGAGT 993 |||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct 908 GGTACGTGCAAACAGAGAAGGACCGCGGATTTCAGTTGCGTGCTTTGTTAGCTCGGGAGT 967 Query 994 GTTTCCAAATTCCACTGTTTATGGACCGATAAAAGAGCTTCTTTCTGATGAAAACCCTGC 1053 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 968 GTTTCCAAATTCCACGGTTTATGGACCGATAAAAGAGCTTATTTCTGATGAAAACCCTGC 1027 Query 1054 AAAGTACAGAGACATCACTATACCAGAATACACTGTAGGATACCTAGCA-AGCATCTTCG 1112 ||||||||||||||||||||||||||||||||||||||||||||| || | |||||| | Sbjct 1028 AAAGTACAGAGACATCACTATACCAGAATACACTGTAGGATACCTTGCGGA-CATCTTTG 1086 Query 1113 ATGGAAAATCGCATTTGTCTAAGTTCCGGATATGAAGAAATTACTTGTATGGCTT 1167 |||||||||||||||||||||||||| ||||||||||||| |||||| |||||| Sbjct 1087 ATGGAAAATCGCATTTGTCTAAGTTCAGGATATGAAGAAAAGACTTGTCTGGCTT 1141 > Ahg496088 jgi|Araly1|496088|fgenesh2_kg.8__1904__AT5G59540.1 Length=1223 Score = 529 bits (286), Expect = 2e-149 Identities = 626/786 (80%), Gaps = 39/786 (5%) Strand=Plus/Plus Query 311 GAGAATTGGGGATTTTTCCAAGTAATCAATCATGGTATTCCTTT-AACTGTTCTTAAAGA 369 |||||||||||||| ||||| || |||||||||||||||||||| ||| |||||| |||| Sbjct 260 GAGAATTGGGGATTCTTCCAGGTGATCAATCATGGTATTCCTTTAAAC-GTTCTTGAAGA 318 Query 370 TATCAAACAAGGTGTTCGAAGATTTCATGAGGAAGATCCAGAGGTCAAGAAA-CAGTA-T 427 || ||| | | ||||| || ||||||||||||||||| |||||||||||| | || | Sbjct 319 GATTAAAGATGCAGTTCGTAGGTTTCATGAGGAAGATCCTGAGGTCAAGAAATTA-TACT 377 Query 428 T-TTGC-TACA-GATTTCAATACAAGATTTGCT-TACAACACCAACTTCGATAT-TCATT 482 | | || | | || ||||| || ||||| | || |||| ||||| ||| | | | Sbjct 378 TCTCGCGT-GATGACGCCAATAAAAAATTTG-TGTATAACAGTAACTTTGATCTAT-ACG 434 Query 483 ATTCTTCTCC-TATG--AATTGGAAAGACTCTTTCACTTGCTACACTTGTCCTCAAGATC 539 |||||| || | || ||||||| ||| |||||| |||| |||| | | ||| ||||| Sbjct 435 GTTCTTCGCCGTCTGTTAATTGGAGAGATTCTTTCTCTTGTTACA-TAG--CTCCAGATC 491 Query 540 CTCTAAAGCCAGAGGAAATCCCACT-AG-CTTGCAGGGATGTTGTGATTGAATACTCGAA 597 ||| | || ||||| || || || || |||||||||||| | || ||||||||||||| Sbjct 492 CTCCAGCTCCTGAGGAGAT-CC-CTGAGACTTGCAGGGATGCTATGTTTGAATACTCGAA 549 Query 598 GCATGTAATGGA-ATTAGGAGGTTTACTCTTCCAACTTCTCTCAGAAGCTTTAGGTTTAG 656 |||||| | || ||||| |||||||| || | ||||||||||||||| ||||||| | Sbjct 550 GCATGT-GTTGAGTTTAGGTGGTTTACTATTTGAGCTTCTCTCAGAAGCTCTAGGTTT-G 607 Query 657 -ACTCTGAGATTCTTAAGAACATGGATTGTCTCAAGGGTTTGCTTATGCTCTGCCATTAT 715 | || |||| ||||||| ||||||||| || ||| |||||||||| ||||||||||| Sbjct 608 AAATCAGAGACCCTTAAGAGCATGGATTGCCTGAAGACTTTGCTTATGATCTGCCATTAT 667 Query 716 TATCCACCTTGTCCACAACCTGACCTAACTTT-GGGCATAAGTAAACACACCGACAATTC 774 || ||||||||||||||||||||||||||||| ||| |||| ||||||| | || || || Sbjct 668 TACCCACCTTGTCCACAACCTGACCTAACTTTAGGG-ATAACTAAACACTCAGATAACTC 726 Query 775 CTTCATAACAATTCTTCTTCAAGATCAA-ATCGGTGGTCTTCAAGTTCTTCATCAAGATT 833 |||| | || ||||||| ||||| ||| || |||||||||||| || |||||||||| | Sbjct 727 CTTCCTCACGCTTCTTCTCCAAGA-CAACATTGGTGGTCTTCAAATTATTCATCAAGACT 785 Query 834 CTTGGGTTGATGTAACTCCTGTTCC-TGGAGCTCTTGTCATCAGTATCGGTGATTTCATG 892 ||||||| ||||| ||| | | || ||||||||| ||| ||| || || |||||| || Sbjct 786 CTTGGGTCGATGTCTCTCATCT-CCATGGAGCTCTCGTCGTCAACATTGGAGATTTCTTG 844 Query 893 CAGCTGATCACAAACGATAAGTTCT-TAAGTATGGAGCATAGGGTACGGGCAAACAGAGA 951 |||||||| || ||||||||||| | ||||| ||||||||||||| | ||||| ||| | Sbjct 845 CAGCTGATAACGAACGATAAGTT-TGTAAGTGTGGAGCATAGGGTGCTTGCAAATAGACA 903 Query 952 TGGACCGCGGATTTCAGTTGCTTGCTTCGTT-AGCTCGGG-AGTGTTTCCAAATTCCACT 1009 ||||| |||||||||| ||| |||| || ||||| | | || ||||||||||| Sbjct 904 AGGACCAAGGATTTCAGTAGCTAGCTTT-TTCAGCTCAAGTA-TGCGTCCAAATTCCAGA 961 Query 1010 GTTTATGGACCGATAAAAGAGCTTCTTTCTGATGAAAACCCTGCAAAGTACAGAGACATC 1069 ||||| |||||||| ||||||||| | ||||| ||||||||| |||| ||||||||||| Sbjct 962 GTTTACGGACCGATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATACAGAGACATA 1021 Query 1070 ACTATA 1075 || ||| Sbjct 1022 ACCATA 1027 > Ahg917696 jgi|Araly1|917696|Al_scaffold_0008_2447 Length=1095 Score = 499 bits (270), Expect = 2e-140 Identities = 681/871 (78%), Gaps = 62/871 (7%) Strand=Plus/Plus Query 311 GAGAATTGGGGATTTTTCCAAGTAATCAATCATGGTATTCCTTT-AACTGTTCTTAAAGA 369 ||||||||||| || ||||| || |||||||||||| ||||||| ||| |||||| | || Sbjct 253 GAGAATTGGGGGTTCTTCCAGGTGATCAATCATGGTGTTCCTTTAAAC-GTTCTTGAGGA 311 Query 370 TATCAAACAAGGTG-TTCGAAGATTTCATGA-G--GAAGATCCAGAGGTCAAGAAA-CAG 424 || ||| | || | ||| |||||||| || | |||||||| |||||||||||| || Sbjct 312 GATTAAAGATGG-GACTCGTAGATTTCACGAGGAAGAAGATCCTGAGGTCAAGAAATCA- 369 Query 425 TA-T-TTTGCTACAGATTTCA--A--TACAAGATTTGCTTACAACACCAACTTCGATATT 478 || | | ||| ||||||| | |||| |||||| |||| | || |||||| | Sbjct 370 TACTACTCGCT--TGATTTCACCACGAACAA-ATTTGCCTACAGTAGTAATTTCGAT-CT 425 Query 479 CAT-TA-TTCTTCTCC-TATG--AATTGGAAAGACTCTTTCACTTGCTACACTTGTCCTC 533 || || |||||| || | || ||||||| ||| ||| || |||| |||| || ||| Sbjct 426 -ATATAGTTCTTCGCCGTCTGTTAATTGGAGAGATTCTATCTCTTGTTACA--TG-GCTC 481 Query 534 AAGATCCTCTAAAGCCAGAGGAAATCCCACTAG-CTTGCAGGGATGTTGTGATTGAATAC 592 ||||||| || || |||||| ||||| || |||||||||||| | ||||||||||| Sbjct 482 CTGATCCTCCAACTCCTGAGGAACTCCCA-GAGACTTGCAGGGATGCTATGATTGAATAC 540 Query 593 TCGAAGCATGTAATGGA-ATTAGGAGGTTTACTCTTCCAACTTCTCTCAGAAGCTTTAGG 651 || |||||||| | || ||||| | ||| ||||| |||||||||||||| |||| Sbjct 541 TCAAAGCATGT-GTTGAGTTTAGGTGATTTGCTCTTTGGGCTTCTCTCAGAAGCACTAGG 599 Query 652 TTTAG-ACTCTGAGATTCTTAAGAACATGGATTGTC-TCAAGGGTTTGCTTATGCTCTGC 709 ||| | | |||||||| ||||||| ||||| ||| | | ||| ||||||||||| |||| Sbjct 600 TTT-GAAATCTGAGATCCTTAAGAGCATGGGTTG-CTTGAAGAGTTTGCTTATGATCTGT 657 Query 710 CATTATTATCCACCTTGTCCACAACCTGACCTAACTTT-GGGCATAAGTAAACACACCGA 768 |||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| | || Sbjct 658 CATTATTACCCACCTTGTCCACAACCTGACCTAACTTTAGGG-ATAACTAAACATTCAGA 716 Query 769 CAATTCCTTCATAACAATTCTTCTTCAAGATCAA-ATCGGTGGTCTTCAAGTTCTTCATC 827 ||| || ||| | || ||||||||||||| ||| || |||||||||||| ||||||||| Sbjct 717 CAACTCTTTCCTCACGGTTCTTCTTCAAGA-CAACATTGGTGGTCTTCAAATTCTTCATC 775 Query 828 AAGATTCTTGGGTTGATGTAACTCCTGTTCCTGGAGCTCTTGTCA-TCAGTATCGGTGAT 886 |||| |||||||||||||| ||||| ||||||||||||| || | ||| ||||| ||| Sbjct 776 AAGACTCTTGGGTTGATGTCTCTCCTCTTCCTGGAGCTCTGGT-AGTCAACATCGGAGAT 834 Query 887 TTCATGCAGCTGATCACAAACGATAAGTTCT-TAAGTATGGAGCATAGGGTACGGGC-AA 944 ||| |||||||||| || ||||||||||| | ||||| ||||||||||||| | || || Sbjct 835 TTCTTGCAGCTGATAACCAACGATAAGTT-TGTAAGTGTGGAGCATAGGGTGCTTGCGAA 893 Query 945 -ACAGAGATGGACCGCGGATTTCAGTTGCTTGCTTCGTT-AGCTCGGGAGTGTT--TCCA 1000 ||| || ||||| |||||||||| || |||| || ||||| ||| | | | Sbjct 894 TACAC-GA-GGACCAAGGATTTCAGTAGCGAGCTTT-TTCAGCTCA--AGTATACGTG-A 947 Query 1001 -AATTCCACTGTTTATGGACCGATAAAAGAGCTTCTTTCTGATGAAAACCCTGCAAAGTA 1059 ||||| || ||||||||||| || ||||||||| | ||||| ||||||||| |||| || Sbjct 948 GAATTCAACAGTTTATGGACCAATGAAAGAGCTTGTGTCTGAAGAAAACCCTCCAAAATA 1007 Query 1060 CAGAGACATCA-CTATACCAGAATACACTGTAGGATACCT-A-GCAAGCATCTTCGATGG 1116 |||||| | || || || ||||||| | | ||||||| | | | ||| |||| ||||| Sbjct 1008 CAGAGATA-CAACTTTAAGAGAATACTCAGAAGGATACTTTAAGAAAGG-TCTT-GATGG 1064 Query 1117 AAAATCGCATTTGTCTAAGTTCCGGATATGA 1147 || ||||||| |||| || ||| |||||||| Sbjct 1065 AACATCGCATCTGTCGAATTTCAGGATATGA 1095 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47463031665 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5