BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43460.1 Length=858 Score E Sequences producing significant alignments: (Bits) Value Ahg497403 jgi|Araly1|497403|fgenesh2_kg.349__1__AT5G43460.1 1085 0.0 Ahg919109 jgi|Araly1|919109|scaffold_100390.1 429 2e-119 > Ahg497403 jgi|Araly1|497403|fgenesh2_kg.349__1__AT5G43460.1 Length=827 Score = 1085 bits (587), Expect = 0.0 Identities = 733/801 (92%), Gaps = 20/801 (2%) Strand=Plus/Plus Query 5 TGTTAATAAATAAACCTAAACCAATAGAACCGCAGT-TTTTCCTCCTCGCCGAAACGAAG 63 ||| ||||||||||||||||||| |||||||| | | |||||||||||| | ||||| Sbjct 1 TGTCAATAAATAAACCTAAACCAGTAGAACCGAACTCTTTTCCTCCTCG-C----CGAAG 55 Query 64 AAGATTCTCCTTCTCTCCGTCAGACAAATCTACGAACAAGCGAGCCTGAGCTTAAGACCA 123 |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 56 AAGATTCTCCTTGTCTCCGTCAGACAAATCTACGAACAAGCGAGCCTGATCTCAAGACCA 115 Query 124 AACTCATAGAGATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCTCTCTTTA 183 ||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 116 AACACAGAGAGATGGGTTTCTTCTCGTTTCTTGGAAGAGTTCTCTTCGCTTCTCTCTTTA 175 Query 184 TCCTCTCCGCTTGGCAAATGTTCAATGATGGTGGTCCTGCAGCTAAAGAATTGGCTCCAA 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 TCCTCTCCGCTTGGCAAATGTTCAATGATGGTGGTCCTGCAGCTAAAGAATTGGCTCCAA 235 Query 244 AGCTTGATTTGGTTAAGGCACATTTATCTTCTAGATTAGGAGTAACATTGCCCAAAATAG 303 |||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 236 AGCTTGATTTGGCCAAGGCACATCTATCTTCTAGATTAGGGGTAACATTGCCCAAAATAG 295 Query 304 AGGTGAGACAAGTCGTTGCTACTATTATTGCCCTGAAAGGAGTCGGAGGCTTACTCTTTG 363 ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 296 AGGTGAGACAAGTTGTTGTTACTATTATTGCCCTGAAAGGAGTCGGAGGCTTACTCTTTG 355 Query 364 TTATCGGAAACACCTTCGGTGCTTATCTTCTGGCTTCCTACTTGGTGGTTTTCGGTCCTA 423 |||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||| Sbjct 356 TTATCGGAAACATCTTCGGTGCTTATCTTCTGGCTTTCTACTTGGTTGTTGTCGGTCCTA 415 Query 424 TTCTCTATGATTTCTACAACTACGGACCTCAGGAACGTCATTTCTCTCTTCTGTTGACAG 483 |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 416 TTCTGTATGATTTCTACAACTACAAACCTCAGGAACGTCATTTCTCTCTTCTGTTGACAG 475 Query 484 AGTTCTTGCAGAGCGTTGCACTCTTTGGAGCGTTACTCTTCTTTATCGGAATGAAGAACT 543 ||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 476 AGTTCTTACAGAGTATTGCACTCTTTGGAGCATTACTCTTCTTTATTGGAATGAAGAACT 535 Query 544 CGACACCCGCCAAGAAGAATTTGAAGAAGAGGACACCTAAGCCGAAAGCTGCCTAGTATC 603 || ||||| |||||| |||| ||||||||||||||||||||||||||||||| || |||| Sbjct 536 CGTCACCCTCCAAGAGGAATCTGAAGAAGAGGACACCTAAGCCGAAAGCTGCTTAATATC 595 Query 604 AATATTAGTTTTCTTCTGGTTTTGCCATGAGCAA-G--CAATACCTT-GCcttttccttt 659 |||||||||| |||| | || | | | | || | ||||||||| | |||||||||| Sbjct 596 AATATTAGTTATCTT-T--TTAT-CAAAAAAAAACGAGCAATACCTTTGGCTTTTCCTTT 651 Query 660 tttcccgacaaaatctttccttagaacttttgttttctttctgttttAGGATTCTTAGAT 719 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 652 TTTCCCGACAAAATCTTTCCTTAGAACATTGGTTTTCTTTCTGTTTTAGGATTCTTAGAT 711 Query 720 TAGCTCATGATCTTATACTAATACTGTGATTTGATATTGGGGATCTTGAAGTTTTGGTTT 779 ||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| Sbjct 712 TAGCTCATGATCTTATACT------GTGATTTGATATTGGGGTTCTTGAAGTTTTGATTT 765 Query 780 GTTGAAACTGGAACCATGCAG 800 ||||||||| |||||||||| Sbjct 766 GTTGAAACTTCAACCATGCAG 786 > Ahg919109 jgi|Araly1|919109|scaffold_100390.1 Length=521 Score = 429 bits (232), Expect = 2e-119 Identities = 406/486 (84%), Gaps = 27/486 (6%) Strand=Plus/Plus Query 135 ATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTC-TCTCTTTATCCTCTCCGC 193 ||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||| Sbjct 21 ATGGGTTTCTTCTCTTTTCTTGGAAGAGTTCTCTTCGCTTCGT-TATTCATCCTCTCCGC 79 Query 194 TTGGCAAATGTTCAATGA-T--GG---TG--G-T---CCTGCAGCTAAAGAATTGGCTCC 241 |||||||||||||||||| | || || | | || ||||| ||||| || ||||| Sbjct 80 TTGGCAAATGTTCAATGACTTTGGAACTGACGGTGGTCCAGCAGCCAAAGAGTTAGCTCC 139 Query 242 AAAGCTTGATTTGGTTAAGGCACATTTATCTTCTAGATTAGGAGTAACATTGCCCAAAAT 301 |||||||||| || || |||||| | ||||| | ||| |||||| |||||||||| | Sbjct 140 AAAGCTTGATCTGAACAAAGCACATCTCTCTTCCATATTTGGAGTAGCATTGCCCAACTT 199 Query 302 AGAGGTGAGACAAGTCGT-TGCTACTATTATTGCCCTGAAAGGAGTCGGAGGCTTACTCT 360 |||||||| ||||||||| || |||||| |||| ||||||||| ||||||||||||||| Sbjct 200 AGAGGTGAAACAAGTCGTGTGG-ACTATTGTTGCTCTGAAAGGACTCGGAGGCTTACTCT 258 Query 361 TTGTTATCGGAAACACCTTCGGTGCTTATCTTCTGGCT-TCCTACTTGGTGGTTTTCGGT 419 |||||||||| |||| ||||||||| |||||||||||| ||| ||||||||||| || || Sbjct 259 TTGTTATCGGCAACATCTTCGGTGCCTATCTTCTGGCTGTCC-ACTTGGTGGTTGTCAGT 317 Query 420 CCTATTCTCTATGATTTCTACAACTACGGACCTC-AGGAACGTCATTTCTCTCTTCTGTT 478 || ||| | ||||||||||||||||||||||| | |||| || || ||||||||||| || Sbjct 318 CCCATTTTATATGATTTCTACAACTACGGACC-CGAGGACCGCCAATTCTCTCTTCTATT 376 Query 479 GACAGAGTTCTTGCAGAGCGTTGCACT-CTTTGGAGCGTTACTCTTCTTTATCGGAATGA 537 ||| || ||||| ||||| |||||||| || || || || || || ||||||||||||| Sbjct 377 GACTGAATTCTTACAGAGTGTTGCACTTCTCGGG-GCTTTGCTATTTTTTATCGGAATGA 435 Query 538 AGAACTCGAC-AC--CCGCCAAGAAGAATT-TGAAGAAGAGGACACCTAAGCCGAAAGCT 593 |||| ||||| || || |||||| || || ||||||||||||| || ||||| |||||| Sbjct 436 AGAATTCGACGACGACCTCCAAGAGGA-TTCTGAAGAAGAGGACTCCCAAGCCTAAAGCT 494 Query 594 GCCTAG 599 || ||| Sbjct 495 GCTTAG 500 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31756389861 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5