BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43520.1 Length=753 Score E Sequences producing significant alignments: (Bits) Value Ahg915887 jgi|Araly1|915887|Al_scaffold_0008_638 1085 0.0 > Ahg915887 jgi|Araly1|915887|Al_scaffold_0008_638 Length=720 Score = 1085 bits (587), Expect = 0.0 Identities = 673/713 (94%), Gaps = 12/713 (2%) Strand=Plus/Plus Query 51 GCACCCAAGTCACAACCATCCGCTGCGTGTCTTTAAAGCCAAAGAAGAGGATGAGACCGC 110 |||| | |||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 10 GCACGCGAGTCACAACCATCCAC-CCGTGTCTTTAAAGCCAAAGAAGAGGATGAGACCGC 68 Query 111 ATGCTCTGGCTGCGAGCTAGAGCTGACCGGGCAAGCTTTCAAATGTATAAAGTCAGAGTG 170 |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || Sbjct 69 ATGCTCTGGCTGCGAGCTAGAGCTGACCGGGCAAGCTTTCAAGTGTACAAAGTCAGAATG 128 Query 171 CGATTACTTCTTACACAAGTCATGTTTCGACCTTCCTAGTGAGACCAATAACAAGTCTCA 230 |||||||||||| |||||||||||||||||||| |||| |||||||||| |||||||||| Sbjct 129 CGATTACTTCTTGCACAAGTCATGTTTCGACCTACCTAATGAGACCAATCACAAGTCTCA 188 Query 231 CCAGGACCACCCTCTGACCTTGCTTCATTCCCCACCAGATGATCGGTCTGTCTACACGTG 290 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 189 CCAGGACCACCCTCTGACCTTGCTTCATTCCCCACCAGATGATCGGTCTGTTTACACGTG 248 Query 291 TGACGCGTGTGACCAATACGGATCTGGATTTTCTTACCATTGCTCAAACTGCAACTACAG 350 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 249 TGACGCGTGTGACCAATACGGATCTGGATTCACTTACCATTTCTCAAACTGCAACTACAA 308 Query 351 TCTTCATGTGGGATGTGCGTTTATCCCTGAAACCGTAGATCGTGAAGATCATGAACATCC 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 TCTTCATGTGGGATGTGCGTTTATCCCTGAAACCGTAGATCGTGAAGATCATGAACATCC 368 Query 411 ACTCACTCTTCTTTATTGCACACCGTGTAAAGGACGTGAAGACACG-TACTTCACTTGCA 469 ||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| Sbjct 369 ACTCACTCTTCTTTATTGCACACCGTGTAAAGGTCGTGAAGACACGAT-CTTCACTTGCA 427 Query 470 GCGCTTGTGATGAAACTATTTCAGAAGATCTATGGATGTATTACTGTAAGGATTGTGACT 529 ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 428 GCGTTTGTGATGAAACTATTTCAGAAGATCTATGGATGTATTACTGTAAGGAATGTGACT 487 Query 530 ATGGAACACATCTACACTCATGTGCGGCATATgaagaccaagg-------gaa-ag-aag 580 ||||||||||| |||| |||||||||||||||||||| |||| ||| || ||| Sbjct 488 ATGGAACACATGTACATTCATGTGCGGCATATGAAGATCAAGAATCAAATGAAGAGGAAG 547 Query 581 aagaagatgaagacgaagaaggagaagCGAGTTCTCCAGCTTCTAGGATAAAGTCGTTGA 640 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 548 AAGAAGAAGAAGACGAAGAAGGAGAAGCGAGTTCTCCAGCTTCTAGGATAAAGTCTTTGA 607 Query 641 TGAAGGCGCAAGACGAGATGGCGGCTATGCAGCTAGAGGCACGTATTGAGAATGATGCGA 700 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 608 TGAAGGCGCAAGACGAGATGGCGGCTATGCAGCTAGAGGCACGTATTGCGAATGATGCGA 667 Query 701 GGAATGCTGCACTTGATCTGTGGGATGAACCAAAACGTAGATACTATTGGTGA 753 |||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 668 GGAATGCTGCGCTTGATCTTTGGGATGAACCAAAACGTAGATACTATTGGTGA 720 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27753483576 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5