BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43600.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494642 jgi|Araly1|494642|fgenesh2_kg.8__458__AT5G43600.1 2769 0.0
Ahg887553 jgi|Araly1|887553|Al_scaffold_0484_1 388 6e-107
Ahg946687 jgi|Araly1|946687|scaffold_702916.1 377 1e-103
Ahg952031 jgi|Araly1|952031|scaffold_30700002.1 344 1e-93
> Ahg494642 jgi|Araly1|494642|fgenesh2_kg.8__458__AT5G43600.1
Length=1764
Score = 2769 bits (1499), Expect = 0.0
Identities = 1687/1775 (95%), Gaps = 24/1775 (1%)
Strand=Plus/Plus
Query 1 AACAAAACACTCTGTCAGATTCCCACTTAG-TTTTGAGGATTCCCC-AAAAAACAAATTT 58
||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||
Sbjct 1 AACAAAACACTCTGTCAGATTCCCACTAAGTTTTTGAGGATTCCCCAAAAAAAC-AATTT 59
Query 59 GGACAATGATAACGCTCAAAATTTAATTAA-TAAGTTTCCCC-AAAGTATAATTACCAAA 116
|||| | |||| ||||||||||||||||| ||| ||||||| ||| |||||||||||||
Sbjct 60 GGAC-A--ATAATGCTCAAAATTTAATTAATTAA-TTTCCCCAAAAATATAATTACCAAA 115
Query 117 TTATGAATGAATAGTATTG--CTCTCTCAGAATCAAAACACTGAAGGAGaaaaaaataaa 174
|||||||| | |||||| |||||||||||||||||||| ||| ||||||||||| ||
Sbjct 116 TTATGAAT---T-GTATTGCTCTCTCTCAGAATCAAAACACAGAA-GAGAAAAAAATCAA 170
Query 175 aaTGGAATCTTTGAAACGTTTCCTCTGCTCTATTGCGCTTCTTCTTATCTCCCTTCTTCT 234
||||||||||||| |||| ||||||||||||||||| |||||| || |||||||||||||
Sbjct 171 AATGGAATCTTTGGAACGCTTCCTCTGCTCTATTGCTCTTCTTGTTCTCTCCCTTCTTCT 230
Query 235 ACCTTCAAGCTTAGCT---CAACAACAACAACATGAATCAATCAGAACAATGGAAGATTT 291
|||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 231 ACCTTCAAACTTAGCTCAACAACAACAACAACATGAATCAATTAGAACAATGGAAGATTT 290
Query 292 TTCCGGATACCCAATTCACGAACCGGGTCAATTCGGTTCCATCAATCTCGCTTCTTCACT 351
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TTCCGGATGCCCAATTCACGAACCGGGTCAATTCGGTTCCATCAATCTCGCTTCTTCACT 350
Query 352 CTCCGTTGATGCTCCAGGACTGCAAAACCAGATAGATGAGCTATCTAGTTTCTCTGATGC 411
||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 351 CTCCGTTGATGCTCCAGGACTACAAAACCAGATAGATGAGCTTTCTAATTTCTCTGATGC 410
Query 412 TCCTTCTCCATCAGTCACCAGAGTTCTTTATACTGACAAAGATGTCTCGGCTCGAAGGTA 471
|||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 411 TCCTTCTCCATCAGTCACTAGAGTTCTTTACACTGATAAAGATGTCTTGGCTCGAAGGTA 470
Query 472 TGTGAAGAATTTGATGGCACTTGCTGGTCTTACTGTTAGAGAAGATGCTGTTGGTAACAT 531
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGTGAAGAATTTGATGGTACTTGCTGGTCTTACTGTTAGAGAAGATGCTGTTGGTAACAT 530
Query 532 ATTTGGCAAATGGGATGGTTTAGAGCCAAATCTGCCTGCTGTAGCCACTGGTTCTCACAT 591
|||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||
Sbjct 531 ATTTGGCAAATGGGATGGTTCAGAGCCAAATCTTCCTGCTGTAGCGACTGGTTCTCATAT 590
Query 592 CGATGCTATTCCATATTCCGGGAAATATGATGGTGTTGTCGGTGTTTTAGGTGCGATTGA 651
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 591 CGATGCTATTCCATATTCCGGGAAGTATGATGGTGTTGTCGGTGTTTTAGGTGCGATTGA 650
Query 652 AGCTATCAATGTTTTGAAAAGGTCGGGGTTTAAACCGAAGAGGTCTCTGGAGATAATCTT 711
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 651 AGCTATCAATGTTTTGAAAAGGTCGGGGTTTAAACCGAAGAGATCTCTGGAGATAATCTT 710
Query 712 GTTCACATCTGAAGAACCGACCCGATTTGGGATCAGTTGTTTAGGAAGCCGCTTGCTTGC 771
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GTTTACATCTGAAGAACCGACCCGATTTGGGATCAGTTGTTTAGGAAGCCGCTTGCTTGC 770
Query 772 TGGAAGCAAAGAACTTGCAGAAGCACTAAAGACTACAGTTGTTGATGGCCAAAATGTGTC 831
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 771 TGGAAGCAAAGAACTTGCAGAAGCACTAAAGACTACAGTTTTTGATGGCCAAAATGTGTC 830
Query 832 TTTTATAGAAGCAGCTAGATCAGCAGGATACGCAGAAGACAAAGATGACGACTTATCGAG 891
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 831 CTTTATAGAAGCAGCTAGATCAGCTGGATACGCAGAAGATAAAGATGACGACTTATCGAG 890
Query 892 TGTGTTCTTGAAGAAAGGAAGTTATTTTGCTTTTCTAGAGTTGCATATTGAACAGGGACC 951
|||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||
Sbjct 891 TGTGTTCTTGAAGAAAGGAAGTTACTTTGCTTTTATAGAGTTACATATCGAACAGGGACC 950
Query 952 TATACTTGAAGACGAAGGTTTAGATATCGGTGTTGTAACCGCCATTGCTGCTCCAGCAAG 1011
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 951 TATACTTGAAGACGAAGGTTTAGATATCGGTGTAGTAACCGCCATTGCTGCTCCAGCAAG 1010
Query 1012 TTTGAAGGTGGAATTTGAAGGCAATGGAGGTCATGCTGGTGCTGTACTTATGCCATATAG 1071
||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||
Sbjct 1011 TTTGAAGGTGGAATTTGAAGGCAGTGGAGGTCATGCCGGTGCTGTGCTTATGCCATATAG 1070
Query 1072 AAATGATGCCGGGCTTGCAGCTGCAGAGTTGGCTCTTGCCGTGGAGAAACATGTATTAGA 1131
||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1071 CAATGATGCCGGGCTTGCGGCTGCAGAGTTGGCTCTAGCTGTGGAAAAACATGTATTAGA 1130
Query 1132 GTCGGAGTCAATAGATACTGTTGGAACTGTTGGTATTCTGGAGCTACATCCTGGGGCAAT 1191
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GTCGGAGTCAATAGATACTGTAGGAACTGTTGGTATTCTGGAGCTACATCCTGGGGCAAT 1190
Query 1192 CAACAGCATTCCAAGCAAATCCCATCTTGAAATCGATACAAGGGATATCGATGAAGCGAG 1251
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1191 CAACAGCATCCCAAGCAAATCCCATCTTGAAATAGATACAAGGGATATTGATGAAGCGAG 1250
Query 1252 AAGAAACACCGTGATCAAGAAAATTCAGGAATCTGCTAACACGATAGCTAAAAAACGAAA 1311
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1251 AAGAAACACCGTGATCAAGAAAATTCAGGAATCTGCTAACGCTATAGCTAAAAAACGAAA 1310
Query 1312 AGTGAAGCTATCAGAATTCAAGATTGTAAATCAAGATCCACCAGCACTCTCTGACAAACT 1371
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1311 AGTGAAGCTATCAGAATTCAAGATTGTAAATCAAGATCCTCCAGCACTCTCAGACAAACT 1370
Query 1372 AGTAATCAAGAAAATGGCAGAGGCAGCCACAGAACTTAACTTATCACACAAGATGATGAT 1431
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1371 AGTAATCAAGAAAATGGCAGAGGCAGCGACAGAACTTAACTTATCACACAAGATGATGAT 1430
Query 1432 CAGCCGAGCTTATCATGATTCTCTCTTCATGGCCAGGATATCTCCGATGGGTATGATATT 1491
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1431 CAGCCGAGCTTATCATGATTCTCTATTCATGGCCAGGATATCTCCGATGGGTATGATATT 1490
Query 1492 CATTCCGTGCTACAAAGGATACAGCCATAAACCTGAAGAATACTCATCTCCTGAAGACAT 1551
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 CATCCCGTGCTACAAAGGATACAGCCATAAACCTGAAGAATACTCATCTCCTGAAGACAT 1550
Query 1552 GGCTAATGGAGTAAAAGTACTCTCCCTCACTCTGGCTAAGCTCTCTTTAGACTGATGCAA 1611
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1551 GGCTAATGGAGTAAAAGTACTCTCCCTCGCTCTGGCTAAGCTCTCTTTAGACTGATGCAA 1610
Query 1612 ACCCTCTTTC-TCATCCAGAAGCTTTGCACATTCTCTACCTTTTCTTCAGTCTTTGTATC 1670
||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1611 ACCCT-TTTCCTCACCCAGAAGCTTTACACATTCTCTACCTTTTCTTCAGTCTTTGTATC 1669
Query 1671 TTTGACAATGTAAAGAAAA-TTCAATAAATGTTGTGGCTATCAC-TTATCAAGTTA-CAG 1727
||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1670 TTTGACAATGTAAAGAAAAATTCAATAAATGTTGTGGCTATCAAGTTAACAAGTTAACAG 1729
Query 1728 TCACAGttttttttttAAAATCTGTTGTAATTATC 1762
|||||||||||||| |||| ||||||||||||||
Sbjct 1730 TCACAGTTTTTTTTAAAAAAACTGTTGTAATTATC 1764
> Ahg887553 jgi|Araly1|887553|Al_scaffold_0484_1
Length=222
Score = 388 bits (210), Expect = 6e-107
Identities = 218/222 (98%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 1385 ATGGCAGAGGCAGCCACAGAACTTAACTTATCACACAAGATGATGATCAGCCGAGCTTAT 1444
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGAGGCAGCGACAGAACTTAACTTATCACACAAGATGATGATCAGCCGAGCTTAT 60
Query 1445 CATGATTCTCTCTTCATGGCCAGGATATCTCCGATGGGTATGATATTCATTCCGTGCTAC 1504
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CATGATTCTCTATTCATGGCCAGGATATCTCCGATGGGTATGATATTCATCCCGTGCTAC 120
Query 1505 AAAGGATACAGCCATAAACCTGAAGAATACTCATCTCCTGAAGACATGGCTAATGGAGTA 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGGATACAGCCATAAACCTGAAGAATACTCATCTCCTGAAGACATGGCTAATGGAGTA 180
Query 1565 AAAGTACTCTCCCTCACTCTGGCTAAGCTCTCTTTAGACTGA 1606
||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 AAAGTACTCTCCCTCGCTCTGGCTAAGCTCTCTTTAGACTGA 222
> Ahg946687 jgi|Araly1|946687|scaffold_702916.1
Length=463
Score = 377 bits (204), Expect = 1e-103
Identities = 232/246 (94%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 670 AAGGTCGGGGTTTAAACCGAAGAGGTCTCTGGAGATAATCTTGTTCACATCTGAAGAACC 729
||||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 176 AAGGTTGGGGGTTAAACCGAAGAGATCTCTGGAGATAATCTTGTTTACATCTGAAGAACC 235
Query 730 GACCCGATTTGGGATCAGTTGTTTAGGAAGCCGCTTGCTTGCTGGAAGCAAAGAACTTGC 789
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 236 AACCCGATTTGGGATCAGTTGTTTAGGAAGCTGCTTGCTTGCTGGAAGCAAAGAACTTAC 295
Query 790 AGAAGCACTAAAGACTACAGTTGTTGATGGCCAAAATGTGTCTTTTATAGAAGCAGCTAG 849
||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 296 AGAAGTACTAAAGACTACAATTTTTGATGGCCAAAATGTGTCCTTTATAGAAGCAGCTAG 355
Query 850 ATCAGCAGGATACGCAGAAGACAAAGATGACGACTTATCGAGTGTGTTCTTGAAGAAAGG 909
|||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 356 ATCAACTGGATACGCAGAAGATAAAGATGACGACTTATCGAGTGTGTTCTTGAAGAAAGG 415
Query 910 AAGTTA 915
||||||
Sbjct 416 AAGTTA 421
> Ahg952031 jgi|Araly1|952031|scaffold_30700002.1
Length=461
Score = 344 bits (186), Expect = 1e-93
Identities = 212/225 (94%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 691 GAGGTCTCTGGAGATAATCTTGTTCACATCTGAAGAACCGACCCGATTTGGGATCAGTTG 750
||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct 195 GAGATCTCTGGAGATAATCTTGTTTACATATGAAGAACCAACCCGATTTGGGATCAGTTG 254
Query 751 TTTAGGAAGCCGCTTGCTTGCTGGAAGCAAAGAACTTGCAGAAGCACTAAAGACTACAGT 810
|||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct 255 TTTAGGAAGCTGCTTGCTTGCTGGAAGCAAAGAACTTACAGAAGTACTAAAGACTACAAT 314
Query 811 TGTTGATGGCCAAAATGTGTCTTTTATAGAAGCAGCTAGATCAGCAGGATACGCAGAAGA 870
| ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 315 TTTTGATGGCCAAAATGTGTCCTTTATAGAAGCAGCTAGATCAACTGGATACGCAGAAGA 374
Query 871 CAAAGATGACGACTTATCGAGTGTGTTCTTGAAGAAAGGAAGTTA 915
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TAAAGATGACGACTTATCGAGTGTGTTCTTGAAGAAAGGAAGTTA 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5