BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43630.1
Length=2934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331043 jgi|Araly1|331043|fgenesh1_pm.C_scaffold_8000386 2342 0.0
> Ahg331043 jgi|Araly1|331043|fgenesh1_pm.C_scaffold_8000386
Length=2280
Score = 2342 bits (1268), Expect = 0.0
Identities = 1496/1605 (93%), Gaps = 19/1605 (1%)
Strand=Plus/Plus
Query 1017 GCTCAAGCAAGATAGTTCCTTCATGAATTGGATATCAAATATGACTAAAGGAATCTGGAA 1076
||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 681 GCTGAAGCAAGATAGTTCCTTCATGAATTGGATATCAAACATGACAAAAGGGATCTGGAA 740
Query 1077 AGGTAATGAAGAAGACAATTCTCCTTTTGTAGCTCTTACCACCACCTCAAATGCTAATGG 1136
|||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 741 AGGTAATGAAGAAGACGATTCTCCTTTTGCAGCTCTTACCACCACCTCAGATGCTAATGG 800
Query 1137 TCATGGCCAAGTCAATGCCATCGTTGACCAACAACAATTGAGTCCATGCTGTGTGAAGGA 1196
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TCATGGCCAAGTCAATGCAATCGTTGACCAACAACAATTGAGTCCATGCTGTGTGAAGGA 860
Query 1197 AAATAGTGGATGCAGAAACACCGGTTTCCAGTCTTTTTTCCAGTCTATATATTGTCCGAA 1256
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 861 AAATAGTGGATGCAGAAACACTGGTTTCCAGTCTTTTTTCCAGTCTATATATTGTCCGAA 920
Query 1257 GAAACAAAGTCAAGATGTCGTCGACATGGATTTCCCGAATGATGTTAATGCTGCTCCTTT 1316
||||| ||||||||||| |||||| ||||||||||||||||||| ||||||| || ||||
Sbjct 921 GAAACGAAGTCAAGATGCCGTCGAGATGGATTTCCCGAATGATGCTAATGCTACTTCTTT 980
Query 1317 GCAGGAACTTCCCTGGATTCCTGAACATTGCGACATTTCCAAAGGGGATGACTTGTCTTC 1376
||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 981 GCAGGAACTTCCCTGGATTCCTGAACAATGTGACATTGCCAAAGGGGATGACTTGTCTTC 1040
Query 1377 ATCTGGTAATGAGATTGGTCCAGTGGCTGAACCCAACATTTCATCAGGAAAAGTTGTATT 1436
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1041 ATCTGGTAATGATATTGGTCCAGTGGCTGAACCCAACATTTCATCAGGAAAAGTTGGATT 1100
Query 1437 TAATCAGACAAGCAAAACACAGTCTTCAGAGAACAAACGTGAGGACAAAGAGCCAAACAT 1496
|||||||| |||| |||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 1101 TAATCAGAGAAGCGAAACACTCTCGTCAGAGAACAAACGTGAGGACAAAGAACCAAACAT 1160
Query 1497 CTCGTTGATGTCTCTTAGTAAGTCTAAGCCAAATGAAGAGCCAAAAA-CATGCGGTGAAG 1555
||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1161 CTCTTTGATGTCTCTTAGTAAGTCTAAGCCAAATGAAGAGCCAAAAATC-TGCGGTGAAG 1219
Query 1556 CTGATGGAAAGGTTAGTCCATGTTTAACCAACAGAAACTCTGGTCTTAAAAGTTTGTGGA 1615
||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1220 CTGGTGGAAAGGTTAGTCCATGTTTAAACAACAGAAACTCTGGTCTTCAAAGTTTGTGGA 1279
Query 1616 TTAGTCGGTTTTCTTCTAAAGGTTCGTTCCCTCAGAAAAAGGCAAGTGAAACGGCTAAAG 1675
| || ||||||||||||||| || ||||||||||||||||| | ||||||||||||||||
Sbjct 1280 TAAGCCGGTTTTCTTCTAAAAGTCCGTTCCCTCAGAAAAAGACCAGTGAAACGGCTAAAG 1339
Query 1676 AGGCCAATGCTTCAGCCTCAGACGCAGCTAAAACCCGTGATTCACGGAAAATGCTGGCAG 1735
||| ||||||||||||||||||| |||||||||||| |||||| | ||||||||||| |
Sbjct 1340 AGGTCAATGCTTCAGCCTCAGACACAGCTAAAACCCATGATTCGCAGAAAATGCTGGTAA 1399
Query 1736 ACAAGAATGTTATAAGACCCAGTATCAGCTCGGTAGATGGGCCCGATAAACCGGACACTG 1795
| || |||||| ||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1400 ATAATAATGTTGTAATACCCAGTATCAGCTCGGTAGATGGGCTCGATAAACCGAACACTG 1459
Query 1796 TCCTTCCTATAGTTTCGTCAATGAGAATAGAGTCTTCAGAAGCAATGGCTTCTTTGTTTG 1855
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 TCCTTCCCATAGTTTCGTCAATGAGAATAGAGTCTTCAGAAGCAATGGCTTCTTTGTTTG 1519
Query 1856 CTAGAAG-ATTAGAAGCAATGAAA-AGCATCATGCCCTCAGGTTCTTTAGCTGAGAATGC 1913
||||||| || ||||||||||||| | |||||| ||| ||||||||||||||||||||||
Sbjct 1520 CTAGAAGGAT-AGAAGCAATGAAACA-CATCATACCCGCAGGTTCTTTAGCTGAGAATGC 1577
Query 1914 AGAGGAGGAACAGAGGGATCTAATTTGTTTCTACTGCGGTAAAAAGGGTCATTGTTTACG 1973
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1578 AGAGGAGGAACAGCCAAATCTAATCTGTTTCTACTGCGGTAAAAAGGGTCATTGTTTACA 1637
Query 1974 GGATTGTTTGGAAGTAACTGATACTGAGCTCAGAGATCTAGTACAGAACATAAGTG-TGC 2032
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1638 GGATTGTTTGGAAGTAACTGATACTGAGCTCAGAGATCTAGTACAGAACATAAGTTCT-C 1696
Query 2033 GGAATGGAAGAGAAGAAGCGTCAAGTCTATGCATTAGATGTTTTCAGCTTAGTCACTGGG 2092
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1697 GGAATGGAAGAGAAGAAGCGTCAAGTCTATGCATTAGATGTTTTCAGCTAAGTCACTGGG 1756
Query 2093 CTGCAACATGCCCGAATGCTCCCCTGTATGGTTCAGGAGCTGAAGGTAGAGCTATGAAGA 2152
|||||||||||||||||| ||| |||||| ||||||||||||||| |||||||||||||
Sbjct 1757 CTGCAACATGCCCGAATGGTCCACTGTATAGTTCAGGAGCTGAAGATAGAGCTATGAAGC 1816
Query 2153 ACGCTTTAGCTTCTACCTCTGGCATGAAGCTGCCCATAAGTGGTTTCACAGACGTACCAA 2212
|| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1817 ACACTTTAGCTTCTACCTCTGGCATGAAGCTGCCCGTAAGTGGTTTCACAGATGTACCAA 1876
Query 2213 GGGCGGTCTTTGATGCTGTTCAAGTGCTTCGCCTGAGCCGCACAGACGTTCTCAAATGGA 2272
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1877 AGGCGGTCTTTGAGGCTGTTCAAGTGCTTCGCCTCAGCCGCACAGACGTTCTCAAATGGA 1936
Query 2273 TAAACACCAAGAAGTCTGTATCGGGTCTCGAAGGGTTCTTCTTGCGGTTAAGGCTCGGGA 2332
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1937 TAAACACCAAGAAGTCTTTATCGGGTCTCGAAGGGTTTTTCTTGCGGTTAAGGCTCGGGA 1996
Query 2333 AATGGGAAGAAGGGCTTGGAGGAACAGGGTATTATGTAGCTCGCATAGATGGGGACACAG 2392
||||||||||||| ||||||||||||||||| || ||||| |||||||||| | |
Sbjct 1997 AATGGGAAGAAGGTCTTGGAGGAACAGGGTACTACGTAGCCCGCATAGATG---A----G 2049
Query 2393 AGGGACAAAGCTCAAGGAGACATTCAGAGAAAAGCTTAATTTCAGTTAAGGTTAAAGGTG 2452
|| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 2050 -GG-ACAAAGCTCAAGGAGACATTCAGAGAAAAGCTCAATCTCAGTTAAGGTTAAAGGGG 2107
Query 2453 TGACTTGCCTTGTTGAGTCTCAGTTTATCTCAAACCAAGACTTTCTTGAGGAGGAGTTAA 2512
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2108 TGACTTGCCTTGTTGAGTCTCAGTTTATCTCAAACCACGACTTTCTTGAGGAGGAGTTGA 2167
Query 2513 AGGCCTGGTGGCAGAGCGCGGGGAAAAGTGCCAGAAC-AAGCGGCTACGACGGCATCCCG 2571
|||| ||||||| ||||||||||||||||||| ||| |||||||| ||| ||||||||
Sbjct 2168 AGGCGTGGTGGCGGAGCGCGGGGAAAAGTGCC-GAAAGAAGCGGCTGCGAGGGCATCCCA 2226
Query 2572 TCGGCGGAGGAACTTAGTCGGAAAATTCAGCAGAGAAAAATGTTA 2616
||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2227 TCGGCAGAGGAACTTAGTCGGAAAATTCAGCAGAGAAAGATGTTA 2271
Score = 808 bits (437), Expect = 0.0
Identities = 616/695 (89%), Gaps = 42/695 (6%)
Strand=Plus/Plus
Query 130 ATGGGAGATGGAGATGAGCAAAGTAAAGAGTTAGGAGGAGTTTCGTCTTCGAGTCGTCGT 189
|||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 1 ATGGGAGATGGAGATGAGCAAAGTAAAGAGTTAGAAGGACTCTCGTCTTCGAGTCGTC-- 58
Query 190 TGTTCTTCCGGTACTGCTGGTGCTGCAAATGCAGAAGCAAGAATGAAGTTTGCTGCTGTT 249
||||||| ||| | || || ||||||||||||| |||||||||||||||||| |||||
Sbjct 59 -GTTCTTCGGGT-C--CTAGTTCTGCAAATGCAGAGGCAAGAATGAAGTTTGCTTCTGTT 114
Query 250 GATGCTATAACAGAATTAGTGTGGTCTCCTAGCAACGGTCTAAGCTTAAGATGTGCAGAT 309
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 115 GATGCTATAACAGAATTAGTGTGGTCTCCTGGAAACGGTCTAAGCTTAAGATGTGCAGAT 174
Query 310 ATCAGTTTCACGGGAAAGGCAAAATTACTCTCTCCTAACTTCTTTGATATAGGACTAACT 369
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 175 ATCAGTTTCACGGGAAAAGCAAAATTAGTCTCTCCTAACTTCTTTGATATAGGACTAACC 234
Query 370 AACATGGCGATTCACTCAAATAGCACAAGTATTGAAGACCAAGAAGATCACGTAGATGTC 429
|| ||||||||||| || ||||| |||||||| ||| ||| ||| | |||||||
Sbjct 235 AATATGGCGATTCATTCGAATAGTACAAGTATCGAACACC---AAG---A---AGATGTC 285
Query 430 GAATTGAGAAACCGAGATCAAGTGAACCAAGCAATGATTGGTGGTTCTGTTGAGGATATG 489
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 286 GAATTGAGAAGCCGAGATCAAGTGAACCAAGAAAGGATTGGTGGTTCTGTTGAGGATATG 345
Query 490 AAACCTGAAATGGTTGAGGATAAGGTTGAAACCAATGATGATATAAAGAATGAAGAAGCA 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 346 AAACCTGAAATGGTTGAGGATAAGGTTGAAACCAATGATGATATAAAGAATGAAGTAGCA 405
Query 550 GGATGTTCCAAAAGATCTTCAGATAGTCCGAAAGCTATGGAAGGAGAAACCAGAGACTTG 609
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GGAAGTTCCAAAAGATCGTCAGATAGTCCGAAAGCTATGGAAGGAGAAACCAGAGACTTG 465
Query 610 TTGGTTAATGAACAGTTGAGGATGGAAAGTGCTGGATCTCAAGAAG-A---A------G- 658
||||| |||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 466 TTGGTGAATGAACAGTTGAGGATGGAAAGTGCTGGATCTCAAGAAGGACCGACTAACCGT 525
Query 659 GG-GATAA-G--GC-GC--ATAA------TAG-AG--TTGATCGTTTAGAATCAATGGAT 702
|| ||||| | | | |||| || || |||||||||||||||||||||||
Sbjct 526 GGAGATAAAGATGAAGGGGATAAGGCGAATAATAGAATTGATCGTTTAGAATCAATGGAT 585
Query 703 GAGAACAACCTCGCAACTCTTGCTGTTGTAGCATGTGAAGGTAAAGGGGACTATTTGCCG 762
||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 586 GAGAATAACCTTGCAACTCTTGCTGTTGTAGCATGTGAAGGCAAAGGGGAATATTCACCG 645
Query 763 GAGGGTGAGGCTGGACCTAGTGGTTCCTACAGGCG 797
||| ||||||||||||||||||||||||||||||
Sbjct 646 GAGAATGAGGCTGGACCTAGTGGTTCCTACAGGCG 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110766432460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5