BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43750.1 Length=850 Score E Sequences producing significant alignments: (Bits) Value Ahg887362 jgi|Araly1|887362|Al_scaffold_0037_4 953 0.0 Ahg915863 jgi|Araly1|915863|Al_scaffold_0008_614 592 2e-168 > Ahg887362 jgi|Araly1|887362|Al_scaffold_0037_4 Length=639 Score = 953 bits (516), Expect = 0.0 Identities = 601/642 (94%), Gaps = 6/642 (1%) Strand=Plus/Plus Query 78 ATGGCAACGGTCACGATTCTCTCACCCAAATCGATTCCAAAGGTCACT-GATTCCAAATT 136 ||||||||||||| ||||||||| ||||||||||| |||||| ||| | ||||| || || Sbjct 1 ATGGCAACGGTCATGATTCTCTCTCCCAAATCGATCCCAAAGATCA-TAGATTCGAAGTT 59 Query 137 CGGAGCTAGGGTTTCTGATCAGATCGTCAATGTCGTAAAATGCGGCAAATCCGGCCGGAG 196 || | || |||| ||||||||| |||||||||||| ||||||||||| ||||||||||| Sbjct 60 TGGTGTTAAGGTTCCTGATCAGACCGTCAATGTCGTGAAATGCGGCAATTCCGGCCGGAG 119 Query 197 ATTGAAGTTAGCGAAGCTGGTCTCAGCGGCTGGATTGTCACAGATCGAACCAGACATCAA 256 ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct 120 ATTGAGGTTAGCGAAGCTGGTCTCAGCTGCTGGATTGTCACAGATTGAACCAGATATAAA 179 Query 257 CGAAGACCCGATTGGTCAATTCGAGACTAATAGCATTGAAATGGAAGATTTCAAGTATGG 316 ||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 180 CGAAGACCCCATTGGTCAATTTGAGATTAATAGCATTGAAATGGAAGATTTCAAGTATGG 239 Query 317 ATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTTTGGGG 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 ATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTTTGGGG 299 Query 377 AGCAATTGCTGATGACATTGCTGCTGTGGATCAAACTAATGGGTTTCAAGGTTTGATCTC 436 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 300 AGCAATTGCTGATGACATTGCTGCTGTGGATCAAACAAATGGATTTCAAGGTTTAATCTC 359 Query 437 TT-GTATGTTTCTTCCTGCTATAGCT-CTTGGGATGTATTTTGATGCTCCGGGTGAGTAC 494 || | ||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 360 TTTG-ATGTTTCTTCCTGCTATAGCTGCA-GGGATGTATTTTGATGCTCCGGGTGAGTAC 417 Query 495 TTGTTCATAGGTGCAGCGTTATTCACGGTAGTGTTCTGTATAATAGAGATGGATAAACCT 554 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 418 TTGTTCATAGGTGCAGCGTTGTTCACGGTAGTGTTTTGTATAATAGAGATGGATAAACCA 477 Query 555 GACCAGCCACACAACTTCGAGCCTCAGATATACAAATTGGAGAGAGGAGCTCGTGACAAG 614 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 478 GACCAGCCACACAACTTTGAGCCTCAGATATACAAATTGGAGAGAGGAGCTCGCGATAAG 537 Query 615 CTCATTAATGACTACAACACAATGAGCATTTGGGACTTTAATGACAAATATGGTGATGTA 674 ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 538 CTCATTAATGATTACAACACAATGAGCATCTGGGACTTTAATGACAAGTATGGTGATGTA 597 Query 675 TGGGATTTCACCATTGAGAAAGATGATATCGCCACACGATAA 716 |||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TGGGATTTCACCATTGAGAAAGATGATATCGCCACACGATAA 639 > Ahg915863 jgi|Araly1|915863|Al_scaffold_0008_614 Length=552 Score = 592 bits (320), Expect = 2e-168 Identities = 384/415 (93%), Gaps = 4/415 (1%) Strand=Plus/Plus Query 73 AAAAAATGGCAACGGTCACGATTCTCTCACCCAAATCGATTCCAAAGGTCACT-GATTCC 131 |||||||||||||||||| |||||| || ||||||||||| |||||| ||| | ||||| Sbjct 5 AAAAAATGGCAACGGTCATGATTCTTTCTCCCAAATCGATCCCAAAGATCA-TAGATTCG 63 Query 132 AAATTCGGAGCTAGGGTTTCTGATCAGATCGTCAATGTCGTAAAATGCGGCAAATCCGGC 191 || || |||| || |||| ||||||||| |||||||||||| ||||||||||| |||||| Sbjct 64 AAGTTTGGAGTTAAGGTTCCTGATCAGACCGTCAATGTCGTGAAATGCGGCAATTCCGGC 123 Query 192 CGGAGATTGAAGTTAGCGAAGCTGGTCTCAGCGGCTGGATTGTCACAGATCGAACCAGAC 251 |||||||||| |||||| |||||||| ||||| ||||||||||||||||| |||||||| Sbjct 124 CGGAGATTGAGGTTAGCTAAGCTGGTTTCAGCTGCTGGATTGTCACAGATTGAACCAGAT 183 Query 252 ATCAACGAAGACCCGATTGGTCAATTCGAGACTAATAGCATTGAAATGGAAGATTTCAAG 311 |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 184 ATCAACGAAGACCCGATTGGTCAATTTGAGATTAATAGCATTGAAATGGAAGATTTCAAG 243 Query 312 TATGGATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTT 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 TATGGATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTT 303 Query 372 TGGGGAGCAATTGCTGATGACATTGCTGCTGTGGATCAAACTAATGGGTTTCAAGGTTTG 431 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 304 TGGGGAGCAATTGCTGATGACATTGCTGCTGTGGATCAAACAAATGGGTTTCAAGGTTTA 363 Query 432 ATCTCTTGTATGTTTCTTCCTGCTATAGCT-CTTGGGATGTATTTTGATGCTCCG 485 |||||||| |||||||||||||||||||| | ||||||||||||||||||||| Sbjct 364 ATCTCTTGCCTGTTTCTTCCTGCTATAGCTGCA-GGGATGTATTTTGATGCTCCG 417 Score = 220 bits (119), Expect = 1e-56 Identities = 133/140 (95%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 577 CTCAGATATACAAATTGGAGAGAGGAGCTCGTGACAAGCTCATTAATGACTACAACACAA 636 ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 413 CTCCGATATACAAATTGGAGAGAGGAGCTCGCGATAAGCTCATTAATGACTACAACACAA 472 Query 637 TGAGCATTTGGGACTTTAATGACAAATATGGTGATGTATGGGATTTCACCATTGAGAAAG 696 ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 473 TGAGCATCTGGGACTTTAATGACAAGTATGGTGATGTATGGGATTTCACAATTGAGAAAG 532 Query 697 ATGATATCGCCACACGATAA 716 | |||||||||||||||||| Sbjct 533 ACGATATCGCCACACGATAA 552 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31451406525 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5