BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43770.1
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494628 jgi|Araly1|494628|fgenesh2_kg.8__444__AT5G43770.1 785 0.0
> Ahg494628 jgi|Araly1|494628|fgenesh2_kg.8__444__AT5G43770.1
Length=589
Score = 785 bits (425), Expect = 0.0
Identities = 530/579 (92%), Gaps = 14/579 (2%)
Strand=Plus/Plus
Query 10 CAAAAGTTATGTCTTTGATCTCCGCAAATCTTATGCGAGGCACt-ttttttGTATGTTCA 68
|||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||
Sbjct 1 CAAAAGTTATGTCTTTGATCTCTGCAAATCTTATGCGAGGCACTCTCTTTT-TATGTTCA 59
Query 69 TCATTCAAGTCTAAGCCATGGTCTGGAAGGTTAATCACCGCGGTGAAATCGGTTTCGTGT 128
|||||||||||||||||||||||| | |||||||||| |||| ||||||||||||||||
Sbjct 60 TCATTCAAGTCTAAGCCATGGTCTACACGGTTAATCACTGCGGCGAAATCGGTTTCGTGT 119
Query 129 ACTTCTAAGCCGGTTAGAGGGTTAACCAACTATAGTACCGGGGTCTATTTCGTTAGCCAA 188
|||||||||||| |||||||||||||||||| || ||| || ||||||||||||||||||
Sbjct 120 ACTTCTAAGCCGATTAGAGGGTTAACCAACTCTACTACTGGAGTCTATTTCGTTAGCCAA 179
Query 189 ACCGGTCCACCAG-AAAT-CAAGTTTCCC-GGTGGATCTCCTTCGGAGAAAGAGTTACCT 245
||||||||||| | |||| ||| ||||| ||||| |||||||| ||| |||||||||||
Sbjct 180 ACCGGTCCACC-GAAAATCCAA--TTCCCTGGTGGGTCTCCTTCAGAGGAAGAGTTACCT 236
Query 246 TCA-GGACCAAGTAGAGGACCAGAGTTGGCTCCATTAGAAGTTCCGGAGCTTCCTAATAT 304
||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 237 TCACGG-CCAAGTAGAGGACCAGAGTGGGCTCCATTAGAAGTCCCGGAGCTTCCTAATAT 295
Query 305 ACCAGAGATAAGTCCGTCGGAAACTCCACCGGAAGTTACAACGGTTCCAAGTGATCCACC 364
||| ||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct 296 ACCGGAGATAAATCCGTCGGAAACTCCACCAGAAATTACGACGGTTCCAAGTGATCCACC 355
Query 365 CCCGCTTGGACCACCGCAGACTCCGGGCCCGGAGTTTCCGGTTCCACCATCTCCATCTCC 424
||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 356 ACCGCTTGGACCGCCACAGACTCCTGGCCCCGAGTTTCCGGTTCCACCATCTCCATCTCC 415
Query 425 ACCGATGCCAGATACTCCAAATCCTCCTACACCAAAAACACCACCTGATGTAG-TGCCTC 483
||||||||||||||||||||||||||||| |||||||| || |||||||| | | ||||
Sbjct 416 ACCGATGCCAGATACTCCAAATCCTCCTAGGCCAAAAACTCCCCCTGATGT-GATACCTC 474
Query 484 CGATTTGGGAACCACCTCGACCACCGGATATCTTCCCACCGGAGAGTCCACCACCGGGAA 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CGATTTGGGAACCACCTCGACCACCGGATATCTTCCCACCGGAGAGTCCACCACCGGGAA 534
Query 544 TTGACCCGCCACCGCCTTTAGGACCC-ACCATCATGTAG 581
| |||| ||||||||| ||||| ||| ||||||||||||
Sbjct 535 TCGACCTGCCACCGCCGTTAGG-CCCTACCATCATGTAG 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24894264801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5