BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43780.1
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494627 jgi|Araly1|494627|fgenesh2_kg.8__443__AT5G43780.1 2333 0.0
> Ahg494627 jgi|Araly1|494627|fgenesh2_kg.8__443__AT5G43780.1
Length=1621
Score = 2333 bits (1263), Expect = 0.0
Identities = 1527/1649 (93%), Gaps = 39/1649 (2%)
Strand=Plus/Plus
Query 1 CAATGTTCTCTTAAAGATTAAGAGAGCCAAAACGAAGCAAATTAATCTGCCTTCAATGGC 60
||||||||||||||||||||||||||||||||| |||| || | |||||||||
Sbjct 1 CAATGTTCTCTTAAAGATTAAGAGAGCCAAAACAAAGC-----AA--T---TTCAATGGC 50
Query 61 TTCTTCAGCAGCAGCCATCG---TCTCCGGTTCTCCATTTCGTTCTTCACCATTAATCCA 117
|||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||
Sbjct 51 TTCTTCAGCAGCAGCCATCGTCTTCTCCGATTCTCCGTTTCGTTCTTCACCATTAATCCA 110
Query 118 TAAC-CATCATGCTTCTCGTTATGCTCCTGGATCCATCTCCG--T-CGT-ATCTCT-CC- 170
| || ||||||| |||||||||||||||| ||||| |||||| | ||| ||||| ||
Sbjct 111 T-ACGCATCATGTTTCTCGTTATGCTCCTAGATCCGTCTCCGTCTCCGTCGTCTCTCCCT 169
Query 171 CCCGTCAAGTTTCCCGCCGTGGCCTCTCCGTTAAATCGGGGTTGATCGAGCCAGACGGAG 230
|||||| || ||||||||| || ||| |||| ||||||| ||| ||||||||||||||||
Sbjct 170 CCCGTCGAGCTTCCCGCCGCGGTCTCGCCGTGAAATCGGCGTTAATCGAGCCAGACGGAG 229
Query 231 GAAAACTCATGAACCTCGTAGTCGAAGAATCACGGCGGCGCGTGATGAAACACGAGGCGG 290
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 230 GAAAACTAATGAACCTCGTAGTCGAAGAATCACGGCGGCGCGTGATGAAACGCGAGGCGG 289
Query 291 AGACGGTTCCGGCAAGGATCAAGCTGAACCGTGTGGATCTAGAGTGGGTACATGTGCTTA 350
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 290 AGACGGTTCCTATAAGGATCAAGCTGAATCGTGTGGATCTAGAGTGGGTACATGTGCTAA 349
Query 351 GCGAAGGCTGGGCAAGTCCTCTCAAAGGTTTCATGAGACAGTCAGAGTTCCTCCAAACAC 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GCGAAGGCTGGGCAAGTCCTCTCAAAGGTTTCATGAGACAGTCAGAGTTCCTCCAAACAC 409
Query 411 TTCATTTTAACTCGTTCCGGCTCGAAGACGGCTCCGTCGTCAACATGTCGGTTCCGATCG 470
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 410 TTCATTTTAACTCGTTCCGGCTTGAAGACGGCTCCGTCGTCAACATGTCGGTTCCGATCG 469
Query 471 TCCTCGCTATCGACGACGATCAGAAGTTTCGTATCGGGGATTCCAACCAAGTCACACTCG 530
||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||
Sbjct 470 TCCTCGCTATCGACGACGATCAGAAGTTTCGTATCGGAGATTCCAACCGAGTCACGCTCG 529
Query 531 TTGACTCGGTTGGTAATCCCATCGCGATTCTCAACGATATTGAGATTTACAAGCATCCCA 590
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 530 TTGACTCGGTTGGTAATCCGATCGCGATTCTTAACGATATTGAGATTTACAAGCATCCGA 589
Query 591 AAGAAGAACGAATCGCGAGAACATGGGGAACCACGGCTCGTGGGCTTCCTTATGCGGAAG 650
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 590 AAGAAGAGCGAATCGCGAGAACATGGGGAACCACGGCTCGTGGACTTCCTTATGCGGAAG 649
Query 651 AAGCAATCACCAAAGCTGGAAACTGGTTGATTGGAGGTGATTTACAAGTTTTGGAGCCGA 710
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 650 AAGCAATCACCAAAGCTGGAAACTGGTTGATTGGAGGTGATTTGCAAGTCCTGGAGCCGA 709
Query 711 TCAAGTACAATGATGGTTTAGACCGGTTTCGTTTATCTCCGTCGCAGCTGCGGGAGGAGT 770
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 710 TCAAGTACAATGATGGTTTAGATCGGTTTCGTTTATCTCCATCTCAGCTGCGGGAGGAGT 769
Query 771 TTATAAGGCGCGGTGCGGACGCGGTTTTCGCGTTCCAGCTTA-GGAACCCGGTGCATAAT 829
|||||||||||||||||||||||||||| || |||||| ||| |||||||||| || |||
Sbjct 770 TTATAAGGCGCGGTGCGGACGCGGTTTTTGCTTTCCAG-TTAAGGAACCCGGTTCACAAT 828
Query 830 GGTCATGCGCTTCTTATGACGGATACTCGTAGAAGACTTCTTGAGATGGGTTACAAAAAC 889
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 829 GGTCATGCGCTTCTTATGACTGATACTCGTAGAAGGCTTCTTGAGATGGGTTACAAAAAC 888
Query 890 CCTGTCTTGTTGTTGAATCCACTTGGTGGGTTTACTAAGGCTGATGATGTACCTCTCAGC 949
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 889 CCTGTCTTGTTGTTGAATCCACTTGGTGGATTCACTAAGGCTGATGATGTACCTCTCAGC 948
Query 950 TGGCGTATGAGACAGCACGAGAAGGTGTTGGAGGATGGTGTACTGGATCCAGAGACCACT 1009
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 949 TGGCGTATGAGGCAACACGAGAAGGTGTTGGAGGATGGTGTACTGGATCCTGAGACCACT 1008
Query 1010 GTAGTCTCTATCTTCCCATCTCCGATGCTATACGCTGGCCCAACTGAGGTTCAATGGCAT 1069
||||| || |||||||||||||| ||||| || ||||| || ||||||||||| ||||||
Sbjct 1009 GTAGTGTCCATCTTCCCATCTCCAATGCTCTATGCTGGTCCGACTGAGGTTCAGTGGCAT 1068
Query 1070 GCCAAAGCTAGGATCAACGCGGGAGCTAATTTCTACATTGTTGGTCGCGATCCTGCCGGT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1069 GCCAAAGCTAGGATCAACGCGGGAGCTAATTTCTACATTGTTGGTCGCGATCCAGCTGGT 1128
Query 1130 ATGGGCCATCCGACAGAGAAGAGAGATCTTTATGATGCCGATCACGGGAAGAAAGTGCTT 1189
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1129 ATGGGCCATCCGACAGAGAAGAGAGATCTCTATGATGCCGATCACGGCAAGAAAGTGCTT 1188
Query 1190 AGCATGGCACCAGGACTTGAACGCCTCAACATTCTACCCTTCAAGGTCGCTGCATATGAC 1249
|||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1189 AGCATGGCCCCAGGACTCGAACGTCTCAACATTCTTCCCTTCAAGGTCGCTGCATATGAT 1248
Query 1250 AAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATA 1309
||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 1249 AAAACCCAGGGGAAAATGGCTTTCTTCGATCCTTCTAGGTCTCAAGACTTCCTCTTCATA 1308
Query 1310 TCAGGAACCAAGATGCGTGGGTTGGCGAAGAAGAAAGAGAACCCACCAGATGGTTTCATG 1369
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1309 TCAGGAACCAAGATGCGTGGCTTGGCGAAGAAGAAAGAGAATCCACCAGATGGTTTCATG 1368
Query 1370 TGTCCCTCTGGTTGGAAGGTGTTGGTTGACTACTACGACAGTCTCAGTGCAGAGACTGGT 1429
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||
Sbjct 1369 TGTCCCTCTGGTTGGAAGGTGTTGGTTGATTACTATGACAGTCTCAGCGCAGAGTCTGGT 1428
Query 1430 AATGGAAGGGTTTCAGAAGCTGTTGCTTCTGCTTGAATGCAAAAGGTTTCCTTGTCCCAC 1489
||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||
Sbjct 1429 AATGGAAGGGTTTCAGAAGCTGTCGCTTCTGCTTGAATGCAAA-GGTT-CCTTGTCCCAC 1486
Query 1490 AAGATTCACATTTCCTGTTTGTTAGTAACTAAACTCCGTGACAAAAAGCTTCCAATAAAA 1549
||| |||||||||||||||||||| | ||| | | || |||| ||||||||
Sbjct 1487 AAGTTTCACATTTCCTGTTTGTTA--AG-TAA-C------A-AA---GCTTTCAATAAAA 1532
Query 1550 CCAATGTAACATCTGTGTGTTCTTTGCGTCTCTGTTGTCAAACTTGTCGTCGAGTCGCAT 1609
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1533 CCAATGTAACATCTGTGTGTTCTTAGCATCTCTGTTGTCAAACTTGTCATCGAGTCGCAT 1592
Query 1610 CGATTTGTACCATATTTGCTTATTGTGTT 1638
|||| ||||||||||||||||||||||||
Sbjct 1593 CGATATGTACCATATTTGCTTATTGTGTT 1621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5