BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G43840.1 Length=849 Score E Sequences producing significant alignments: (Bits) Value Ahg356702 jgi|Araly1|356702|fgenesh1_pg.C_scaffold_8000489 1192 0.0 > Ahg356702 jgi|Araly1|356702|fgenesh1_pg.C_scaffold_8000489 Length=867 Score = 1192 bits (645), Expect = 0.0 Identities = 804/875 (92%), Gaps = 34/875 (4%) Strand=Plus/Plus Query 1 ATGGATTATAACCTTCCAATTCCATTAGAGGGTCTCAAAGAAAC-GCCACCAACGGCTTT 59 ||||| |||||||||||| ||||||||||||||||||||||||| | |||| | ||||| Sbjct 1 ATGGAATATAACCTTCCACTTCCATTAGAGGGTCTCAAAGAAACAG-GACCAGCTGCTTT 59 Query 60 CTTGACGAAAACATACAACATAGTGGAGGATTCAAGCACAAACAACATAGTTTCATGGAG 119 |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 60 CTTGACGAAAACCTACAACATAGTTGAGGATTCATGCACAAACAACATAGTTTCATGGAG 119 Query 120 CAGAGACAACAACAGCTTCATTGTTTGGGAACCAGAGACTTTTGCCCTAATTTGCCTCCC 179 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 120 CAGAGACAACAACAGCTTCATTGTCTGGGAACCAGAGACTTTTGCCCTAATTTGTCTCCC 179 Query 180 TAGATGCTTTAAGCACAATAATTTCTCCAGCTTTGTTAGACAGCTCAATACTTATGGGTT 239 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 180 TAGATGCTTTAAGCACAACAATTTCTCCAGCTTTGTTAGACAACTCAATACTTATGGGTT 239 Query 240 TAAGAAGATTGATACAGAGAGATGGGAATTTGCAAATGAGCATTTTCTGAAGGGAGAGAG 299 ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || Sbjct 240 TAAGAAGATTGATACAGAGAGATGGGAGTTTGCAAATGAGTATTTTCTGAAGGGAGAAAG 299 Query 300 GCATCTTCTTAAGAACATCAAGAGAAGAAAGACATCATCTCAAACGCAAACGCAGT--C- 356 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 300 ACATCTTCTTAAGAACATCAAGAGAAGAAAGACATCATCTCAAACGCAAACGCAGTCGCT 359 Query 357 -----GC--------T--A---GAAGGAGAGATCCATGAGCTGCGAAGAGACAGAATGGC 398 || | | ||||||||||||||||||||| ||||||||||| |||| Sbjct 360 AGAAGGCGATAGAGTTCGACTGGAAGGAGAGATCCATGAGCTGAGAAGAGACAGAGTGGC 419 Query 399 TTTAGAAGTAGAACTGGTTAGACTGCGACGAAAACAAGAAAGCGTGAAGACATATCTGCA 458 ||||||| ||||||| || |||||| ||||||||||||||||||||||||| |||||||| Sbjct 420 TTTAGAATTAGAACTAGTGAGACTGAGACGAAAACAAGAAAGCGTGAAGACGTATCTGCA 479 Query 459 TTTGATGGAAGAGAAACTGAAAGTCACAGAAGTAAAGCAAGAAATGATGATGAATTTCTT 518 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 480 TTTGATGGAAGAGAAACTGAAAGTCACAGAAGTGAAGCAAGAAATGATGATGAATTTCTT 539 Query 519 GCTAAAGAAGATTAAGAAACCGAGTTTTTTACAGAGCTTAAGGAAACGTAATCTGCAAGG 578 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 540 GCTAAAGAAGATTAAGAAACCGAGTTTTTTGCAGAGCTTAAGGAAACGTAAGCTGCAAGG 599 Query 579 AATCAAGAATCGAGAGCAAA-AGCAAGAGGTGATCTCAAGCCATGGTGTTGAGGATAATG 637 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| Sbjct 600 AATCAAGAATCGAGAGCAAAGA-CAAGAGGTGATCTCAAGCCATGGTGTTGAGGATCATG 658 Query 638 GAAA-GTTTGTTAAAGCTGAGCCAGAAGAGTATGGTGATGACATCGATGATCAATGTGGA 696 | | |||||||||||||||||| |||||||||||||||||||||| |||||||| |||| Sbjct 659 -ATACGTTTGTTAAAGCTGAGCCGGAAGAGTATGGTGATGACATCGGTGATCAATTTGGA 717 Query 697 GGTGTGTTT-GATTATGGTGATGAGCTTCACATAGCTTCAATGGAGCATCAAGGACAAGG 755 ||||| ||| | |||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 718 GGTGTTTTTAG-TTATGGCGATGAGCTTCACATAGCTTCAATGGAGGATCAAGGACAAGA 776 Query 756 -GGAGGATGAAATTGAAATGGATAGTGAAGGAATTTGGAAGGGTTTCGTGTTGAGTGAGG 814 ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 AGGAGG-TGAAATGGAAATGGATAGTGAAGGAATTTGGAAGGGTTTCGTGTTGAGTGAGG 835 Query 815 AGGAGATGTGTGATTTAGTGGAACATTTTATATAA 849 || | |||||||||||| |||||||||||||||| Sbjct 836 AG-A--TGTGTGATTTAGGGGAACATTTTATATAA 867 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31413283608 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5