BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43850.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494620 jgi|Araly1|494620|fgenesh2_kg.8__436__AT5G43850.1 948 0.0
> Ahg494620 jgi|Araly1|494620|fgenesh2_kg.8__436__AT5G43850.1
Length=636
Score = 948 bits (513), Expect = 0.0
Identities = 570/598 (95%), Gaps = 2/598 (0%)
Strand=Plus/Plus
Query 11 AAAGCATTTACACAACGAAGATCATTAATGGCTCTCGAGGCATGGTTTATGGATGATAGC 70
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGCATTCACACAACGAAGATCACTAATGGCTCTCGAGGCATGGTTTATGGATGATAGC 60
Query 71 AATGAGGACCAGAGACTTCCTCATCATCGTAACCCGAAAGAACTCGTCTCGTTGGATTAC 130
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 AATGAAGACCAGAGACTTCCTCATCATCGTAACCCCAAAGAGCTCGTCTCGTTGGATTAC 120
Query 131 TTGGCAGAGTTGGGAGTGTTGTACTGGAAGTTGAACCCTGAGAACTACGAGAATGATTCT 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 TTGGCAGAGTTGGGAGTGTTGTACTGGAAGTTGAACCCTGAGAACTACGAGAATGATCCC 180
Query 191 GAACTTAGCAAGATTAGAGAAGA-CAGGGGTTACGATTACATGGATTTGCTGGATCTGTG 249
||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 181 GAACTAAGCAAGATTAGAGAAGAAC-GGGGTTACGATTACATGGATTTGCTGGATCTGTG 239
Query 250 TCCCGAGAAAGTCAGCAACTACGAAGAAAAGCTGAAGAACTTTTTCACAGAACACATTCA 309
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 TCCCGAGAAAGTCAGCAACTACGAAGAGAAGCTGAAGAACTTTTTCACAGAACACATTCA 299
Query 310 CAAGGACGAAGAGATTCGGTACTGCCTAGCAGGAAGTGGCTACTTTGATGTTAGGGACAA 369
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 CAAGGACGAGGAGATTCGGTACTGCCTAGCGGGAAGTGGCTACTTTGATGTTAGGGACAA 359
Query 370 GGATGATCGTTGGATCCGTATCTGGATGCAACCTGGCGATCTCATTGTCCTTCCTGCCGG 429
|||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 360 GGATGACCGTTGGATCCGTATCTGGATGCAACCGGGCGATCTTATCATCCTTCCTGCCGG 419
Query 430 AATCTACCACCGGTTCACACTCGACGCCAGCAACTACATCAAGCTAATGAGGCTGTTCGT 489
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 420 AATCTACCACCGGTTCACACTCGACACTAGCAACTACATCAAGCTAATGAGGCTGTTCGT 479
Query 490 GGGGGAACCGGTTTGGACACCATATAACCGGCCACAGGAAGAACATCCTGTTAGGAAAAA 549
||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 480 GGGAGAACCGGTTTGGACACCATATAACCGGCCACAGGAAGAACATCCGGTTAGGCAAAA 539
Query 550 GTATATCCACGGCTTAACCTACAAGTTTGGAGAAACCGTTAAAGCACATTAACAATAT 607
|||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct 540 GTATATAAACGGCTTAACCCACAAGTTTGGAGAAACCATTAAAGCACACTAACAATAT 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5