BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43860.1
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494619 jgi|Araly1|494619|fgenesh2_kg.8__435__AT5G43860.1 1581 0.0
> Ahg494619 jgi|Araly1|494619|fgenesh2_kg.8__435__AT5G43860.1
Length=1086
Score = 1581 bits (856), Expect = 0.0
Identities = 1002/1073 (93%), Gaps = 8/1073 (1%)
Strand=Plus/Plus
Query 25 taataaagaacaa-aaaaaaTGTCCTCTTCTTCATCAAGAAACGCCTTTGAAGATGGCAA 83
||| ||| || || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2 TAAAAAACAA-AAGAAAAAATGTCCTCTTCTTCATCAAGAAACGCCTTTGAGGATGGCAA 60
Query 84 ATACAAATCAAATCTCTTAACCTTGGACTCATCATCTCGTTGCTGCAAAATAACACCGTC 143
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ATACAAAACAAATCTCTTAACCTTGGACTCATCATCTCGGTGCTGCAAAATAACACCGTC 120
Query 144 TTCTAGAGCTTCACCGTCTCCGCCAAAGCAGCTGTTGGTGGCTACGCCGGTGGAGGAAGG 203
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTCGAGCTTCACCGTCTCCGCCGAAGCAGCTGTTGGTGGCTACGCCGGTGGAGGAAGG 180
Query 204 AGATTATCCGGTGGTGATGCTCCTCCATGGTTACCTTCTCTACAACTCCTTCTATTCTCA 263
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 AGAATATCCAGTGGTGATGCTCCTCCATGGTTACCTTCTCTACAACTCCTTTTATTCTCA 240
Query 264 GCTTATGTTGCATGTCTCTTCTCATGGCTTCATCCTCATCGCTCCTCAGTTATATAGTAT 323
||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 241 ACTTATGTTGCATGTCTCTTCTCATGGCTTCATCTTCATCGCTCCCCAGCTATATAGTAT 300
Query 324 CGCCGGACCAGACACAATGGATGAGATTAAATCAACGGCGGAGATTATGGATTGGTTATC 383
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGCCGGACCGGACACAATGGACGAGATTAAATCAACGGCGGAGATTATGGATTGGTTATC 360
Query 384 AGTA-GGACTTAATCACTTTCTTCCAGCGCAAGTAACACCAAACCTATCCAAATTTGCCC 442
|| | |||||||| |||||||||||| | | |||||||||||||||||| ||||||| |
Sbjct 361 AG-ACGGACTTAACCACTTTCTTCCACCACGAGTAACACCAAACCTATCAAAATTTGTAC 419
Query 443 TCTCCGGCCATAGCCGCGGTGGCAAAACCGCGTTTGCGGTCGCCTTAAAGAAATTTGGGT 502
|||| ||||||||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct 420 TCTCAGGCCATAGCCGCGGTGGCAAAACCGCGTTCGCAGTGGCCTTAAAGAAATTTGGAT 479
Query 503 ACTCCTCGAATCTAAAGATCTCGACATTGATCGGTATAGATCCAGTCGATGGAACAGGGA 562
|||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 480 ACTCCTCGGATCTAAAGATCTCTATATTGATCGGTATAGATCCAGTCGATGGAACAGGGA 539
Query 563 AAGGGAAACAAACCCCTCCTCCGGTGTTGGCTTACCTTCCAAACTCATTTGACCTAGACA 622
||||||||||||||||||||||||| || | || ||||||||||||||||||||||
Sbjct 540 AAGGGAAACAAACCCCTCCTCCGGTTTTAACCTATGAACCAAACTCATTTGACCTAGACA 599
Query 623 AAACGCCTATACTTGTGATCGGTTCGGGGCTTGGTGAAACCGCTCGGAACCCATTATTCC 682
||| || || |||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 600 AAATTCCCATGCTTGTGATTGGTTCGGGGCTCGGTGAAACCGCTCGGAACCCATTGTTCC 659
Query 683 CACCGTGTGCACCTCCCGGAGTGAATCACCGAGAGTTCTTTCGGGAATGTCAAGGTCCAG 742
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 660 CACCGTGTGCACCTCCCGGAGTGAACCACCGAGAGTTCTTCCGGGAATGTCAAGGTCCAG 719
Query 743 CATGGCATTTCGTTGCGAAGGATTATGGGCATTTGGACATGCTTGATGATGATACAAAAG 802
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTGGCATTTCGTTGCGAAGGATTATGGGCATTTGGACATGCTTGATGATGATACAAAAG 779
Query 803 GGATTAGAGGGAAGAGTTCTTATTGTTTGTGTAAGAATGGTGAAGAGAGGAGACCAATGA 862
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 780 GGATTAGAGGGAAAAGTTCTTATTGTTTGTGTAAGAATGGTGAAGAAAGAAGACCAATGA 839
Query 863 GGAGATTCGTTGGTGGACTTGTTGTATCATTTTTGAAGGCTTATTTGGAAGGAGATGATC 922
||||||| ||||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 840 GGAGATTTGTTGGTGGAATTGTTGTGTCGTTTTTGAAGGCTTATTTGGAAGGAGATGATC 899
Query 923 GTGAATTAGTTAAGATCAAAGATGGGTGTCACGAGGATGTTCCCGTTGAAATTCAAGAGT 982
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 GTGAATTAGTTAAGATCAAAGATGGGTGTCACGAGGGTGTTCCCGTTGAAATTCAAGAGT 959
Query 983 TTGAGGTTATCATGTAAACATAAGTTTTTCTTTAGGGGCTGGTTTTTCT-ATTGTCAATA 1041
|||||||||||||||||||||||| |||||| |||||||||||||| || ||| ||||||
Sbjct 960 TTGAGGTTATCATGTAAACATAAGATTTTCTATAGGGGCTGGTTTT-CTTATTTTCAATA 1018
Query 1042 TCATCAGCTTTTGTTGCTTATGGTT-TTACAAACTTATATTGTACAACTCTTT 1093
| || ||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 1019 TTATTAGCTTTTGTTGCTTATG-TTGTTACAAACTTATAATGTACAACTCTTT 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42011454534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5