BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43870.1
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331018 jgi|Araly1|331018|fgenesh1_pm.C_scaffold_8000361 2097 0.0
> Ahg331018 jgi|Araly1|331018|fgenesh1_pm.C_scaffold_8000361
Length=1365
Score = 2097 bits (1135), Expect = 0.0
Identities = 1291/1367 (94%), Gaps = 7/1367 (1%)
Strand=Plus/Plus
Query 50 ATGGATCAAAAAAGTAAAACGATTGGAGAACAATGGTGGAGGTCAAATCCAACGTTTAAA 109
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGATCACAAAAGTAAAACGTTTGGAGAACAATGGTGGAGGTCAAATCCAGCGTTTAAA 60
Query 110 CCGCCTGAAACGCCATTAGATTCTATGGAGTTTTTGTCACGTACTTGGAGTGCTTCCGCT 169
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGCCTGAAACGCCGTTAGATTCTATGGAGTTTTTGTCACGTACTTGGAGTGCTTCCGCA 120
Query 170 ACTGAAGTTTCAAGAGCTGTCGTCGCGTCTCCACCGACTTCTCAACCGCCGCAAATGCGT 229
||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 121 ACTGAAGTTTCGAGAGCCGTCGTCGCCTCTCCTCCGACTTCTCAACCACCGCAAATGCGT 180
Query 230 TTCTCGGAGATCCAAAACGGTTCTTCTGACGTCACTTTGGTGCCGGAAGATGAAGAAAAC 289
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 181 TTCTCGGAGATCCAAAACGGTTCTTCTGATGTCACTTTGGTGCCGGAAGATGAAGACAAC 240
Query 290 GGCATCG-TTCTTGGAAATACTTTTTCTTTTGCTTCTTCAGAAACTTCTTTAATGGTCAT 348
||| ||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 241 GGCGTCGTTTC-TGGAAATACTTTTTCTTTTGCTTCTTCTGAGACTTCTTTAATGGTCAT 299
Query 349 GGAACGTATCATGGCTCAGTCACCGGAGATTTCATCGCCACGAACATCAGGGAGACTTTC 408
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGAACGTATCATGGCTCAATCTCCGGAGATTTCATCGCCACGAACATCAGGGAGACTTTC 359
Query 409 TCATAGCTCATTCACCGACAGTCCTCCGATCTCTCCCTCCGACATCGACGACTTTAAGCA 468
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 ACATAGCTCATTCACCGACAGTCCTCCGATCTCTCCCTCCGACATCGATGACTTTAAGCA 419
Query 469 ATTCTACCGTGTGAGCCCTTCCTTTAACGGCCACATACGTGGTTCATCAGCCATTCCCGG 528
|||||||||||||||||| |||||||| || |||||||||||| ||||||||||||||||
Sbjct 420 ATTCTACCGTGTGAGCCCATCCTTTAATGGGCACATACGTGGTCCATCAGCCATTCCCGG 479
Query 529 CACCGCCGGAGGGTCTAAAACTGTTGGTCGTTGGCTAAAGGACCGGCgagagaagaagag 588
|| | |||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TACTGTCGGACGGTCTAAAACTGTTGGCCGTTGGCTAAAGGACCGGCGAGAGAAGAAGAG 539
Query 589 agaagagaCGCGTGCACAAAATGCACAGCTTCACGCGGCTGTATCTGTAGCTGGAGTGGC 648
||| |||||||| |||||||| |||||||| || || ||||||||||||||| | |||||
Sbjct 540 AGAGGAGACGCGCGCACAAAACGCACAGCTCCATGCAGCTGTATCTGTAGCTTGTGTGGC 599
Query 649 TGCCGCGGTGGCTGCTATCGCTGCAGCCACTGCCTCTCAGTCGAGTTCTGGAACTGACGA 708
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 600 TGCCGCTGTGGCTGCTATTGCTGCAGCCACTGCCTCTCAGTCGAGTTCTGGAACCGATGA 659
Query 709 GCAAGTGGCCAAAAATGACTCCGCGGTGGCTTCTGCCGCGACTTTGGTGGCGGCGAAGTG 768
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 660 GCATGTGGCCAAAAATGACTCCGCGGTGGCTTCTGCCGCGACTTTGGTGGCTGCGCAGTG 719
Query 769 TGTGGAAGCTGCAGAGATTATGGGAGCTGATCGTGAGCACTTGGCCTCCGTTGTTAGTTC 828
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGTGGAGGCTGCAGAGATTATGGGAGCTGATCGTGAGCACTTGGCCTCCGTTGTTAGTTC 779
Query 829 TGCGGTTAACGTTCGTTCTGCCGGAGATATCATGACTTTGACCGCCGCTGCTGCCACAGC 888
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 780 TGCGGTTAACGTTCGTTCTGCCGGAGATATCATGACGTTAACCGCCGCTGCTGCCACAGC 839
Query 889 TTTGAGAGGAGCTGC-ACAATTAAAGGCAAGAGCATTGAAGGAGGTATGGAACATTGCGG 947
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 840 TTTGAGAGGAGCTGCGAC-ATTAAAGGCAAGAGCATTGAAAGAGGTATGGAACATTGCGG 898
Query 948 CTGTGATTCCTGTAGATAAGGGTACACCAAAAGGC---GGTGGTGGTGGTTATAGAGGTG 1004
|||||||||| || |||||||||| |||||||||| |||||||||||||||||||| |
Sbjct 899 CTGTGATTCCCGTGGATAAGGGTATACCAAAAGGCGGTGGTGGTGGTGGTTATAGAGGAG 958
Query 1005 GCGAGTTAGCCCCTGTAGATAATTTTCTTGGGATTTGCAGTAAAGAATTGCTAGCTAAAG 1064
||||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 959 GCGAGTTAGCCCCCGAAGATAATTTTCTCGGGATTTGCAGTAGAGAATTGCTAGCTAAAG 1018
Query 1065 GTTGCGAATTGCTTAAACGCACCCGCAAAGGTGATCTTCATTGGAAAGTTGTTTCGATCT 1124
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 GTTGCGAATTGCTCAAACGCACCCGCAAAGGTGATCTTCACTGGAAAGTTGTTTCGATCT 1078
Query 1125 ACATTAATAGAACAAAGCAGGTAATATTGAAGACTAAGAGCAAACATGTTGCTGGGACCA 1184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACATAAATAGAACAAAGCAGGTAATATTGAAGACTAAGAGCAAACATGTTGCTGGGACCA 1138
Query 1185 TCACAAAGAAGAAAAAGAATGTGGTGGTGGGATTGGTTAAGGGATTACCGGCGTGGCCTG 1244
| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1139 TTACAAAGAAGAAAAAGAATGTGGTGGTGGAATTGGTCAAGGGATTACCGGCGTGGCCTG 1198
Query 1245 GCCGGGAAATGCTCGAGGGTGGAGAGAATTTGAGGTATTTCGGGCTGAAGACGGTGGAGA 1304
|||||||| |||||||||| |||||||||||||||||||| || || |||||| |||||
Sbjct 1199 GCCGGGAATTGCTCGAGGGCGGAGAGAATTTGAGGTATTTTGGACTAAAGACGCCGGAGA 1258
Query 1305 AAAGAGTGATTGAATTCGAGTGCAAAAGCCAAAGGGAATATGATCTTTGGACACAAGGTG 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAAGAGTGATTGAATTCGAGTGCAAAAGCCAAAGGGAATATGATCTTTGGACACAAGGTG 1318
Query 1365 TTTCCATGCTTCTTTCCATTGCTTCTGATAGGAAACATAAATGTTGA 1411
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1319 TTTCCATGCTTCTTTCCATTGCTTCTGATAGGAAACAGAAATGTTGA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5