BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43980.1
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915831 jgi|Araly1|915831|Al_scaffold_0008_582 1293 0.0
> Ahg915831 jgi|Araly1|915831|Al_scaffold_0008_582
Length=930
Score = 1293 bits (700), Expect = 0.0
Identities = 862/935 (92%), Gaps = 32/935 (3%)
Strand=Plus/Plus
Query 165 ATGAAACTCACCTATCAATTCTTCATCTTCTGGTTCTTTTTACCATTCTTTGCAATCTCC 224
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1 ATGAAACTCATCTATCAATTCTTCATCTTCTGGTTCTTCTTACCATTCTTTGTAATCTCC 60
Query 225 GGTGATGATGATTATAAAAATCTGATCTTTAAAGGTTGTGCAAATCAGAAA-TCTCCAGA 283
||||||| |||| |||||||||| ||||||||||||||||| ||||||||| || |||||
Sbjct 61 GGTGATGGTGATAATAAAAATCTCATCTTTAAAGGTTGTGCTAATCAGAAATTC-CCAGA 119
Query 284 CCCAACTGGTGTTTTCTCTCAGAATCTCAAAAACTTATTCACTTCTTTAGTTTCTCAATC 343
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 CCCAACTGGTGTTTTCTCTCAGAATCTCAAAAACTTATTCACTTCCTTAGTTTCTCAATC 179
Query 344 ATCACAAAGCTCTTTCGCTTCCGTAACCTCCGGAACTGATAACACCACCGCCGTGATCGG 403
| |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 180 AGCACAAAGCTCTTACGCTTCTGTAACCTCCGGAACTGATAACACAACCGCCGTGATCGG 239
Query 404 TGTTTTTCAGTGCCGTGGCGATCTCCAAAACGCTCAGTGTTACGATTGCGTCTCCAAAAT 463
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 240 TGTTTTTCAGTGCCGTGGCGATCTCCACAACGCTGAGTGTTACGATTGCGTCTCCAAAAT 299
Query 464 CCCTAAACTCGTTTCTAAACTCTGCGGTGGCGGCAGAGATGACGGTAATGTGGTGG---C 520
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
Sbjct 300 CCCTAAACTCGTTTCTAAACTCTGCGGTGGTGGCGGAGATGACGGTAATGTGGTGGTGGC 359
Query 521 GGCTCGTGTTCACCTCGCTGGATGTTATATCCGGTATGAGAGT-TCAGGATTCCGGCAAA 579
||||||||| || || || ||||||||| |||||||||| | | ||||||||||| ||||
Sbjct 360 GGCTCGTGTGCAGCTTGCCGGATGTTATCTCCGGTATGAAA-TCTCAGGATTCCGACAAA 418
Query 580 CTTCCGGTACGGAGATGTTGTTCCGTGTCTGTGGGAAAAAAGATTCTAACGATCCTGGGT 639
|||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 419 CTTCTGGTACGGAGATGTTGTTCCGTATCTGCGGGAAAAAAGATTCCAACGATCCTGGGT 478
Query 640 TTGTCGGGAAA-AGGGAGACGGCGTTTGGTATGGCGGAGAACGGCGTGAAAACTGGATCA 698
|||| || ||| || ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 479 TTGTAGG-AAAGAGAGAGACGGCGTTTGGTATGGCGGAGAACGGTGTGAAAAGTGGATCA 537
Query 699 TCCGGTGG---TGGTG--G----TGG------CGGAGGAGGTTTTTACGCGGGGCAGTAT 743
|||||||| ||||| | ||| ||||||||| |||||||||||||| |||
Sbjct 538 TCCGGTGGCGGTGGTGCTGGCGGTGGTGGTGGCGGAGGAGGGTTTTACGCGGGGCAATAT 597
Query 744 GAGTCGGTGTATGTGTTGGGACAGTGTGAGGGTAGTTTGGGAAATTCAGATTGTGGGGAA 803
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAGTCGGTGTACGTGTTGGGACAGTGTGAGGGTAGTTTGGGAAATTCAGATTGTGGGGAA 657
Query 804 TGTGTGAAAGATGGATTTGAGAAAGCAAAGAGTGAGTGTGGAGAGTCGAACTCGGGACAA 863
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 TGTGTGAAAGATGGATTTGAGAAAGCAAAGAGTGAGTGTGGAGATTCGAACTCGGGACAA 717
Query 864 GTTTACCTTCAGAAGTGCTTCGTTAGCTATAGTTACTACTCTCATGGTGTTCCCAACA-- 921
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GTTTATCTTCTTAAGTGCTTCGTTAGCTATAGTTACTACTCTCATGGTGTTCCCAACAAC 777
Query 922 -TAGAGCCA-TTATCAGGTGGAGAGAAGAGACAACACACAGAAAGGACGATAGCTTTGGC 979
|||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATAGAACCAATT-TCAGGTGGAGAGAAGAGACAACACACAGAAAGGACGATAGCTTTGGC 836
Query 980 GGTGGGAGGAgtttttgttttagggtttgtgattgtttgtttgttggttttgAGGTCTGC 1039
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 837 GGTGGGAGGAGTTTTTGTTTTAGGGTTTGTGATTGTTTGCTTGTTGGTTTTGAGATCTGC 896
Query 1040 CATGAAGAAGAAGAGTAATAAATATGATGCTTATT 1074
|||||||||||||||||| | |||||||||||||
Sbjct 897 CATGAAGAAGAAGAGTAA-A--TATGATGCTTATT 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45290025396
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5