BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44050.1
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494591 jgi|Araly1|494591|fgenesh2_kg.8__407__AT5G44050.1 2281 0.0
> Ahg494591 jgi|Araly1|494591|fgenesh2_kg.8__407__AT5G44050.1
Length=1473
Score = 2281 bits (1235), Expect = 0.0
Identities = 1394/1472 (95%), Gaps = 5/1472 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGAGAGAGACGACGAAGCAGAAGGTATTTTAGAGAAGGCGAAGATTCCTTTGTTA 60
||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||
Sbjct 1 ATGGGAGAGAGGGACGACGGAGCAGAAGG---TGTAGAGAAGGCGAAGATTCCTTTGTTA 57
Query 61 AAGGATCAAAATGTGGCA-GAGGAGGAAAACGGAGAAATAAAGAAAGAGATATGGCTAGA 119
|||||| ||||||||| | ||||||||| |||||||||||||| |||||||||| ||||
Sbjct 58 AAGGATAAAAATGTGG-AGGAGGAGGAAGTCGGAGAAATAAAGAGAGAGATATGGATAGA 116
Query 120 GACGAAGAAGCTGTGGCGTATTGTCGGACCAGCTATATTCACTAGAGTCACGACCAACTT 179
||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 117 GACCAAGAAGCTATGGCGTATTGTTGGACCAGCCATATTCACTAGAGTCACGACCAACTT 176
Query 180 GATCTTTGTCATCACTCAGGCTTTCGCTGGCCACCTCGGCGAGCTAGAACTCGCTGCCAT 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 177 GATCTTTGTCATCACTCAGGCCTTCGCTGGCCACCTCGGCGAGCTAGAACTCGCTGCCAT 236
Query 240 CTCCATCGTCAACAACGTCATTATCGGCTTCAACTATAGCCTCTTCATTGGAATGGCGAC 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTCCATCGTCAACAACGTCATCATCGGCTTCAACTATAGCCTCTTCATTGGAATGGCGAC 296
Query 300 TGCGTTGGAAACGCTGTGCGGTCAAGCGTTTGGAGCAAAGAAGTATGACATGTTTGGAGT 359
||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||
Sbjct 297 TGCGTTGGAAACGCTATGCGGTCAATCGTTTGGGGCAAAGAAGTATGAAATGTTTGGAGT 356
Query 360 GTATTTGCAGCGATCTTGGATTGTTCTTTTCTTATTCTCCATCTTGCTCCTCCCAATGTA 419
||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||
Sbjct 357 GTATTTGCAACGATCTTGGATTGTTCTCTTCTTATGCTCTATCTTGCTCCTCCCAATGTA 416
Query 420 CATCTTTGCGACTCCGATTCTTAAGTTCATGGGCCAGCCTGACGACATCGCAGAGCTCTC 479
|||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 CATCTTTGCGTCCCCGATTCTTAAGTTCATGGGCCAGCCTGACGACATCGCTGAGCTCTC 476
Query 480 CGGTATCATCTCTGTTTGGGCCATTCCTACACATTTCTCATTTGCCTTCTTTTTCCCTAT 539
|||||||||| ||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct 477 CGGTATCATCGCTGTTTGGGCCATTCCTTCCCATTTCTCATTTGCTTTCTTTTTCCCTAT 536
Query 540 CAACCGGTTCCTCCAATGCCAGCTTAAAAATTCGGTGATTGCAATTTCTTCTGGAGTGTC 599
|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| |
Sbjct 537 CAACCGGTTCCTCCAATGCCAGCTTAAAAACTCGGTGGTTGCAATTTCGTCTGGAGTGGC 596
Query 600 ACTTGTAGTTCACATATTTGTGTGCTGGCTTTTTGTGTACGTTCTTGAACTTGGAGTCAT 659
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 597 ACTTGTAGTTCACATATTTGTGTGCTGGCTTTTTATCTACGTTCTTGAACTTGGAGTCAT 656
Query 660 AGGGACCATCGCTACTGCTAACGTGTCATGGTGGCTCAATGTCTTTATCTTATTTACTTA 719
||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 657 AGGTACCATCGCTACTGCTAATGTTTCATGGTGGCTCAATTTCTTTATCTTATTTACTTA 716
Query 720 CACCACTTGCGGCGGTTGTCCGCTCACTTGGACCGGTTTCTCCATGGAATCTTTCACGAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CACCACTTGCGGCGGTTGTCCGCTCACTTGGACCGGTTTCTCCATGGAATCTTTCACGAG 776
Query 780 ACTATGGGAATTCACTAAGCTCTCTGCCTCTTCCGGCATAATGGTTTGCTTGGAGAATTG 839
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 777 ACTATGGGAATTCACTAAGCTCTCTGCCTCTTCCGGAATAATGGTTTGCTTGGAGAATTG 836
Query 840 GTATTATAGGATGTTAATTGTGATGACTGGAAATTTAGAGGATGCAAGAATTGACGTAGA 899
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 837 GTATTATAGGATGTTAATTGTGATGACTGGAAATTTGGAGAATGCAAGAATTGATGTAGA 896
Query 900 CTCTATGTCTATATGCATGTCGATAAATGGTTTGGAGATGATGGTTCCACTTGCTTTCTT 959
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CTCTGTGTCTATATGCATGTCGATAAATGGTTTGGAGATGATGGTTCCACTTGCTTTCTT 956
Query 960 CGCGGGGACCAGCGTACGAGTGGCAAATGAATTAGGAGCAGGCAATGGAAAAAGAGCAAG 1019
|||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 957 CGCGGGTACCAGCGTACGAGTGGCGAATGAACTAGGAGCAGGCAATGGAAAAAGAGCAAG 1016
Query 1020 ATTCGCAATGATCATATCAGTGACACAATCGTTAATCATTGGAATAATCATTTCGGTGCT 1079
||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1017 ATTTGCAATGATCATATCCGTGACACAATCGTTGATCATTGGAATAATAATTTCGGTCCT 1076
Query 1080 CATATATTTTCTGCTTGACCAAATCGGTTGGATGTTCTCTTCAAGTGAAACTGTCCTAAA 1139
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1077 CATATATTTTCTTCTTGACCAAATCGGTTGGATCTTCTCTTCAAGTGAAACTGTCCTAAA 1136
Query 1140 AGCAGTCAATAATCTCTCTATTCTTTTATCCTTTGCGATTCTTCTCAACAGTGTCCAACC 1199
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1137 AGCAGTCAATAATCTCTCTATCCTTTTAGCCTTTGCGATTCTTCTCAACAGTGTCCAACC 1196
Query 1200 GGTTCTCTCCGGTGTTGCGGTTGGTTCGGGTTGGCAATCACTAGTCGCATTTATAAATTT 1259
|||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1197 GGTTCTTTCCGGTGTTGCGGTTGGTTCGGGTTGGCAATCATTAGTGGCATTTATAAATTT 1256
Query 1260 GGGATGCTACTATTTCATTGGACTTCCACTTGGAATTGTCATGGGCTGGATGTTCAAGTT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1257 GGGATGCTACTATTTCATTGGACTTCCACTTGGAATTGTCATGGGCTGGATTTTTAAGTT 1316
Query 1320 TGGTGTCAAAGGCATTTGGGCGGGTATGATCTTCGGAGGAACCATGGTTCAAACATTGAT 1379
||| ||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1317 TGGCGTCAAGGGTATTTGGGCGGGCATGATATTCGGAGGAACCATGGTTCAAACATTGAT 1376
Query 1380 ATTGATTTTTATTACTATGAGATGCGATTGGGAGAAAGAGGCACAAAACGCTAAGGTTCG 1439
|||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||
Sbjct 1377 ATTGATTTTTATTACTATGAGATGTGATTGGGAGACAGAGGCACAAAAAGCAAAGGTTCG 1436
Query 1440 TGTTAACAAATGGTCTGTATCAGACGCAAGAA 1471
||||| ||||||||||||||| |||||||||
Sbjct 1437 CGTTAATAAATGGTCTGTATCAAACGCAAGAA 1468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61706196900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5