BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44110.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494585 jgi|Araly1|494585|fgenesh2_kg.8__401__AT5G44110.1 1524 0.0
Ahg311479 jgi|Araly1|311479|fgenesh1_pm.C_scaffold_1000259 693 0.0
> Ahg494585 jgi|Araly1|494585|fgenesh2_kg.8__401__AT5G44110.1
Length=1025
Score = 1524 bits (825), Expect = 0.0
Identities = 949/1007 (94%), Gaps = 16/1007 (2%)
Strand=Plus/Plus
Query 35 TCTCCCTCTCTCTATCTGACTCTTTGATCGGAAAAAATGGCGGAGAAAAATGCGAGCGCG 94
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TCTCTCTCTCTCTCTCTGACTCTTTGATCGGAAAAAATGGCGGAGAAAAATGCGAATGCG 60
Query 95 GTGGACGGTGCAATTAGGGTTAGTGGAATGCAGTTTTCTTACGATGTTCAAGATCCTATT 154
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTGACGGTGCGATTAGGGTTAGTGGAATGCAGTTTTCTTACGATGTTCAAGATCCTATT 120
Query 155 TTCTTCGATTTTAATCTCGATCTTCCCGCTGGATCTCGTTGCCTCTTGGTTGGTGCCAAT 214
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTTCGATTTTAACCTCGATCTTCCCGCTGGATCTCGTTGCCTCTTGGTTGGTGCCAAT 180
Query 215 GGATCTGGGAAAACTACGTTATTGAAGATTCTT-GCTGGAAAACATATGGTTGGAGGAAA 273
|||||||| |||||||| |||||||||||| || |||||||| |||||||||||||||||
Sbjct 181 GGATCTGGAAAAACTACATTATTGAAGATT-TTGGCTGGAAAGCATATGGTTGGAGGAAA 239
Query 274 GAATGTTGTACAAGTGCTT-GATCGCTCAGCATTTCATGATACAGAGCTTGTTTGTAGTG 332
|||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAATGTGGTACAAGTG-TTGGATCGCTCAGCATTTCATGATACAGAGCTTGTTTGTAGTG 298
Query 333 GTGATTTGTCTTACCTAGGAGGATCATGGAGTAAAACTGCTGGTTCTGCTGGTGATATTC 392
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 299 GTGATTTGTCTTACCTTGGAGGATCATGGAGTAAAACAGCTGGTTCTGCTGGTGAGATTC 358
Query 393 CACTCCAAGGAGACTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGGATTGATCCTT 452
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CACTACAAGGAGACTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGGATTGATCCTG 418
Query 453 TCAGAAGAGAGAAGTTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGG 512
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGAGAAGAGAGAAGTTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGG 478
Query 513 TTTCTGATGGGCAGAGACGTCGAGTGCAAATATGTATGGGTCTATTACATCCGTTCAAGG 572
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 479 TTTCTGATGGGCAGAGACGTCGAGTGCAAATATGCATGGGTCTCTTACATCCATTCAAGG 538
Query 573 TATTACTACTGGATGAAGTTACTGTTGACCTCGACGTTGTTGCTAGGATGGATTTGTTGG 632
| |||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 539 TGTTACTACTGGATGAGGTTACTGTTGACCTCGATGTTGTTGCGAGGATGGATCTGTTGG 598
Query 633 AGTTCTTTAAAGAAGAATGTGAACAGAGAGGAGCTACAATTGTATATGCAACTCATATTT 692
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AATTCTTTAAAGAAGAATGTGAACAGAGAGGAGCTACAATTGTATATGCAACTCATATTT 658
Query 693 TCGACGGGCTCGAGACATGGGCTAGTCATTTGGCTTACATTAATGGAGGAGAGCTGAAAC 752
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCGACGGTCTAGAGACATGGGCTAGTCATTTGGCTTACATTAATGGAGGAGAGCTGAAAC 718
Query 753 TCTCGGCCAAGTTAGATGAGATCAAGGATCTCAAAACCTCACCAAATCTGCTATCTGTTG 812
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 719 TCTCGGCCAAATTAGATGAGATCAAGGATCTCAAAACCTCTCCAAATCTGCTCTCTGTTG 778
Query 813 TTGAAGCTTGGCTCCGGTCTGAAACCAAAGTTGAGAAAAAGACGAAGAAGAAACCTGTTG 872
||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 779 TTGAATCTTGGCTCCGGTCTGAAACCAAAGTCGAGAAGAAGACGAAGAAGAAACCTGTTG 838
Query 873 TTACCTCTCCATTTATGTCGTCTAGACAAATGGCATATTACCGATGAATCT---TA-A-- 926
||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 839 TTACCTCTCCATTTATGTCGTCTAGACAAATGGCATATTACCGATGAATCTACATATATG 898
Query 927 C-TT-GTTTATGAGATCAGTAAGAATAAGAGCACTGCT--TCTACAGAT--GCCTTTGTT 980
| || ||||| |||||||||||||||||||||||| || |||||| || |||||||||
Sbjct 899 CCTTTGTTTAAGAGATCAGTAAGAATAAGAGCACTTCTACTCTACATATATGCCTTTGTT 958
Query 981 TTCTATGGTACTTCATTGTTTAGAATCCGATAACTTTTATCACACAT 1027
||||||| ||||||||| ||||||||||||||| |||||||| ||||
Sbjct 959 TTCTATGATACTTCATTTTTTAGAATCCGATAATTTTTATCATACAT 1005
> Ahg311479 jgi|Araly1|311479|fgenesh1_pm.C_scaffold_1000259
Length=1809
Score = 693 bits (375), Expect = 0.0
Identities = 667/806 (83%), Gaps = 28/806 (3%)
Strand=Plus/Plus
Query 68 AAAATGGCGGAGAAAAATGCGAGC-GCG-G-TG-GACGGTGCAATTAGGGTTAGTGGAAT 123
||||||||||||||| |||||| | ||| | | || | || ||||| ||||| || ||
Sbjct 940 AAAATGGCGGAGAAAGATGCGA-CGGCGAGCGGCGATGACGCCATTAGAGTTAGCGGTAT 998
Query 124 GCAGTTTTCTTACGATGTTCAAGATCCTATTTTCTTCGATTTTAATCTCGATCTTCCCGC 183
|||||| | ||||| ||| | |||||||| |||||||| || || ||||||||||| ||
Sbjct 999 GCAGTTCGCATACGAAGTTGAGGATCCTATATTCTTCGACTTCAACCTCGATCTTCCAGC 1058
Query 184 TGGATCTCGTTGCC-TCTTGGTTGGTGCCAATGGATCTGGGAAAACTACGTTATTGAAGA 242
||| ||||| |||| || |||||||||||||||||||||| || || || ||| ||||||
Sbjct 1059 TGGTTCTCGCTGCCTTC-TGGTTGGTGCCAATGGATCTGGCAAGACAACCTTACTGAAGA 1117
Query 243 TTCTTGCTGGAAAACATATGGTTGGAGGAAAGAATGTTGTACAAGTGCTTGA-TCGCTCA 301
|||| |||||||| |||||||| ||||||||||| ||||| ||||| ||| | ||||||
Sbjct 1118 TTCTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTTCAAGTTCTT-AGCCGCTCA 1176
Query 302 GCATTT-CATGATACAGAGCTTGTTTGTAGTGGTGATTTGTCTTACCTAGGAGGATCATG 360
|| ||| |||||||| | |||||||| |||||||| |||||||| || |||||||| ||
Sbjct 1177 GC-TTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTATCTTGGAGGATCTTG 1235
Query 361 GAGTAAAACTGCTGGTTCTGCTGGTGATATTCCACTCCAAGGAGACTTCTCAGCAGAACA 420
||||||||| | |||||| ||||| || |||| ||||| ||||| ||||||||||||||
Sbjct 1236 GAGTAAAACCGTTGGTTCAGCTGGCGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACA 1295
Query 421 TATGATATTTGGAGTTGAAGGGATTGATCCTTTCAGAAGAGAGAAGTTGATTGATCTTCT 480
|||||||||||||| | | | |||||| | |||||||| |||||||||||||||||
Sbjct 1296 TATGATATTTGGAG--G-A---ACTGATCCCGTGAGAAGAGAAAAGTTGATTGATCTTCT 1349
Query 481 TGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAGACGTCGAGTGCA 540
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1350 TGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGAGTGCA 1409
Query 541 AATATGTATGGGTCTATTACATCCGTTCAAGGTATTACTACTGGATGAAGTTACTGTTGA 600
||||| ||||| || |||||||| |||||||||||| |||| || || || ||||||||
Sbjct 1410 GATATGCATGGGACTCTTACATCCATTCAAGGTATTATTACTCGACGAGGTCACTGTTGA 1469
Query 601 CCTCGACGTTGTTGCTAGGATGGATTTGTTGGAGTTCTTT-AAAGAAGAATGTGAACAGA 659
||| ||||| ||||| |||||||||||| |||| || ||| |||||||||||||| ||||
Sbjct 1470 CCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATT-TTTCAAAGAAGAATGTGATCAGA 1528
Query 660 GAGGAGCTACAATTGTATATGCAACTCATATTTTCGACGGGCTCGAGACATGGGCTAGTC 719
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||| | |
Sbjct 1529 GAGGAGCTACAATTGTATATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACAC 1588
Query 720 ATTTGGCTTACATTAATGGA-GGAGAGCTGAAAC-TCTCGGCCAAGTT-AGATGAGATCA 776
||||||| || ||| | ||| || |||||||| | | | | || | | | || ||
Sbjct 1589 ATTTGGCCTATATTCA-GGACGGTGAGCTGAATCGTTTAT-CGAAAATGACA-GATATTG 1645
Query 777 AGGATCTCAAAACCTCACCAAATCTGCTATCTGTTGTTGAAGCTTGGCTCCGGTCTGAAA 836
| || || ||||| ||||| || || || || || || ||| |||||||||| |||||||
Sbjct 1646 ACGAGCTGAAAACTTCACCCAACCTCCTTTCCGTGGTAGAATCTTGGCTCCGTTCTGAAA 1705
Query 837 CCAAAGT--TGA-GAAAAAGACGAAG 859
|||| | ||| |||||||| ||||
Sbjct 1706 TCAAACTCGTGAAGAAAAAGAAGAAG 1731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5