BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44190.1 Length=1404 Score E Sequences producing significant alignments: (Bits) Value Ahg494575 jgi|Araly1|494575|fgenesh2_kg.8__391__AT5G44190.1 2069 0.0 Ahg887864 jgi|Araly1|887864|Al_scaffold_0904_1 619 1e-176 > Ahg494575 jgi|Araly1|494575|fgenesh2_kg.8__391__AT5G44190.1 Length=1376 Score = 2069 bits (1120), Expect = 0.0 Identities = 1304/1390 (94%), Gaps = 24/1390 (2%) Strand=Plus/Plus Query 1 GTATCATTCTTGttttctctaaatttttcaaaaaacctttagaattttcatttttttACG 60 ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| Sbjct 1 GTATCATTCTTGTTTTCTCTAAATTTTTC---AAATCTTTAGAATTTTCAAGTTTTT--- 54 Query 61 ATTCCGATGTTAACTGTTTCTCCGGCTCCAGTACTCATCGGAAACAACTCAAAGGATACT 120 | | ||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 55 A-T-AAATGTTAACTGTTTCTCCGGCTCC---ACTCATCGGAAACAACTCGAAGGATACT 109 Query 121 TACATGGCGGCAGATTTCGCAGATTTTACGACGGAAGACTTGCCGGACTTTACGACGGTC 180 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 110 TACATGGCGGCAGATTTCGCAGATTTTACGACGGAAGGCTTGCCGGACTTTACGACGGTC 169 Query 181 GGGGATTTTTCCGATGATCTTCTTGATGGAATCGATTACTACGACGATCTTTTCATTGGT 240 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 GGAGATTTCTCCGATGATCTTCTTGATGGAATCGATTACTACGACGATCTTTTCATTGGT 229 Query 241 TTCGATGGAGACGATGTTTTGCCGGATTTGGAGATAGATTCGGAGATTCTTGGGGAATAT 300 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 230 TTCGATGGAGACGATGTTTTGCCGGATTTGGAGATTGATACGGAGATTCTTGGGGAATAT 289 Query 301 TCCGGTAGCGGAAGAGATGAGGAACAAGAAATGGAGGGTAACACTTCGACGGCATCGGAG 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 290 TCCGGTAGCGGAAGAGATGAGGAACAAGAAATGGAGGGTAACACTTCGACGGCGTCGGAG 349 Query 361 ACATCGGAGAGAGACGTTGG---TGTGTGTAAGCAAGAGggtggtggtggtggtgacggt 417 || ||||||||||||| ||| || |||||||||||||||||| ||||||||||||||| Sbjct 350 ACGTCGGAGAGAGACGGTGGTCATGGGTGTAAGCAAGAGGGTGGCGGTGGTGGTGACGGT 409 Query 418 ggtTTTAGGGACAAAACGGTGCGTCGAGGCAAACGTAAAGGGAAGAAAAGTAAAGATTGT 477 ||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 410 GGTGTTAGGGACAAAACGGTGCGTAGAGGCAAACGTAAAGGGAAGAAAAATAAAGATTGT 469 Query 478 TTATCCGATGAGAACGATATTAAGAAAAAACCTAAGGTGGATTGGACGCCGGAGTTACAC 537 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 470 TTATCCGATGATAACGATATTAAGAAAAAACCCAAGGTGGATTGGACGCCGGAGTTACAC 529 Query 538 CGGAAATTTGTACAAGCGGTGGAGCAATTAGGGGTAGACAAGGCGGTGCCGTCTCGAATC 597 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 530 CGGAAATTTGTACAAGCGGTGGAGCAATTAGGGGTAGACAAGGCGGTGCCGTCACGGATT 589 Query 598 TTGGAAATTATGAACGTTAAATCTCTCACTCGTCACAACGTTGCTAGCCATCTTCAGAAA 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 TTGGAAATTATGAACGTTAAATCTCTCACTCGTCACAACGTTGCTAGCCATCTTCAGAAA 649 Query 658 TATAGGTCACATCGGAAACATCTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAATCTC 717 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 650 TATAGATCACATCGGAAACATCTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAATCTC 709 Query 718 CGGAGACATGCCACGGTGGCAGTGCCCGGAGTAGGAGGAGGAGGGAAGAAGCCGTGGACA 777 ||| ||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||| Sbjct 710 CGGCGACATGCGACGGTGGCAGTGGCCGGAGTAGGAGGAGGTGGGAAGAAGCCATGGACG 769 Query 778 GCTCCTGCCTTAGGCTATCCTCCACACGTGGCACCAATGCATCATGGTCACTTCAGGCCT 837 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 770 GCTCCTGCCTTAGGCTATCCACCACACGTGGCACCAATGCATCATGGCCACTTCAGGCCT 829 Query 838 TTGCACGTATGGGGTCATCCTACGTGGCCAAAACACAAGCCTAATACTCCGGCGTCTGCT 897 |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 830 TTGCACGTGTGGGGTCATCCTACGTGGCCTAAACACAAGCCTAATACTCCTGCGTCTGCT 889 Query 898 CATCGGACGTATCCAATGCCGGCCA-TTGCGGCGGCTCCGGCATCTTGGCCAGGTCATCC 956 |||||||||||||| || || | | |||||||||||||||||||||||||||||||||| Sbjct 890 CATCGGACGTATCCGATTCC-GTTAGTTGCGGCGGCTCCGGCATCTTGGCCAGGTCATCC 948 Query 957 ACCGTACTGGCATCAGCAACCACTCTATCCACAGGGATATGGTATGGCATCATCGAATCA 1016 ||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||| Sbjct 949 GCCGTACTGGCACCAACAACCACTATATCCACAGGGATATGGTATCGCATCATCGAATCA 1008 Query 1017 TTCAAGCATCGGTGTTCCCACAAGACAATTAGGACCCACTAATCCTCCCATCGACATTCA 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1009 TTCAAGCATCGGTGTTCCCACAAGACAATTAGGACCCACTAATCCTCCCATCGACATTCA 1068 Query 1077 TCCCTCGAATGAGAGCATAGATGCAGCTATTGGGGACGTTATATCAAAGCCGTGGCTGCC 1136 ||||||||||||||||||||| || |||||||| || || ||| |||||||||||||||| Sbjct 1069 TCCCTCGAATGAGAGCATAGACGCGGCTATTGGAGAAGTGATAACAAAGCCGTGGCTGCC 1128 Query 1137 GCTTCCTTTGGGACTGAAACCGCCGTCGGTTGACGGTGTTATGACGGAGTTACAACGTCA 1196 ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| ||| Sbjct 1129 GCTTCCTTTGGGACTGAAACCGCCGTCAGTTGATGGTGTCATGACGGAGTTACAACATCA 1188 Query 1197 AGGAGTTTCTAATGTTCCTCCTCTTCCTTGAGAAAGA---TCTCCAAAATTTGTCGAAAT 1253 ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| Sbjct 1189 AGGAGTTTCTAATGTTCCTCCTCTTCCTTGAGAAAAAAAATCTCCAAAATTTGCCGAAAT 1248 Query 1254 CTCAAACTTTTAACTTCAttttttt-GGTATCTTCTATGTATTTTTGCAAGGGAAAGA-- 1310 ||| | |||||||||||||||||| ||||||||||| ||||||||||| |||||| | Sbjct 1249 CTCGAT-TTTTAACTTCATTTTTTTTGGTATCTTCTAAGTATTTTTGCA-GGGAAAAATA 1306 Query 1311 CGATAAATCCTTGTTGCTTGATCATATGTATTTCTCTATATGAGTGCATGTATCGAAGTT 1370 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1307 CTATAAATCCTTGTTGCTTGATCATATGTATTTCTCTATATGAGTGCATGTATCGAAGTT 1366 Query 1371 AAGCAACTTT 1380 |||||||||| Sbjct 1367 AAGCAACTTT 1376 > Ahg887864 jgi|Araly1|887864|Al_scaffold_0904_1 Length=405 Score = 619 bits (335), Expect = 1e-176 Identities = 383/406 (94%), Gaps = 3/406 (1%) Strand=Plus/Plus Query 655 AAATATAGGTCACATCGGAAACATCTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAAT 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAATATAGGTCACATCGGAAACATCTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAAT 60 Query 715 CTCCGGAGACATGCCACGGTGGCAGTGCCCGGAGTAGGAGGAGGAGGGAAGAAGCCGTGG 774 |||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||| ||| Sbjct 61 CTCCGGCGACATGCGACGGTGGCAGTGGCCGGAGTAGGAGGAGGTGGGAAGAAGCCATGG 120 Query 775 ACAGCTCCTGCCTTAGGCTATCCTCCACACGTGGCACCAATGCATCATGGTCACTTCAGG 834 || |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 121 ACGGCTCCTGCCTTAGGCTATCCACCACACGTGGCACCAATGCATCATGGCCACTTCAGG 180 Query 835 CCTTTGCACGTATGGGGTCATCCTACGTGGCCAAAACACAAGCCTAATACTCCGGCGTCT 894 ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 181 CCTTTGCACGTGTGGGGTCATCCTACGTGGCCTAAACACAAGCCTAATACTCCTGCGTCT 240 Query 895 GCTCATCGGACGTATCCAATGCCGGCCA-TTGCGGCGGCTCCGGCATCTTGGCCAGGTCA 953 ||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||| Sbjct 241 GCTCATCGGACGTATCCGATTCCGTT-AGTTGCGGCGGCTCCGGCATCTTGGCCAGGTCA 299 Query 954 TCCACCGTACTGGCATCAGCAACCACTCTATCCACAGGGATATGGTATGGCATCATCGAA 1013 ||| ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| Sbjct 300 TCCGCCGTACTGGCACCAACAACCACTATATCCACAGGGATATGGTATCGCATCATCGAA 359 Query 1014 TCATTCAAGCATCGGTGTTCCCACAAGACAATTAGGA-CCCACTAA 1058 ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 360 TCATTCAAGCATCGGTGTTCCCACAAGACAATTAGGAACCCACTAA 405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52488357610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5