BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44316.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494555 jgi|Araly1|494555|fgenesh2_kg.8__371__AT5G44316.1 1759 0.0
Ahg943249 jgi|Araly1|943249|scaffold_603793.1 881 0.0
> Ahg494555 jgi|Araly1|494555|fgenesh2_kg.8__371__AT5G44316.1
Length=1381
Score = 1759 bits (952), Expect = 0.0
Identities = 1270/1418 (90%), Gaps = 44/1418 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTCTCTTTTCGCAATCGGTTTCTCCAAATTTTCTCCACAACCCACTTCCGATTAT 60
||||| ||||||||||||| |||| |||||| ||||||||||||| |||||||||||| |
Sbjct 1 ATGGCATCTCTTTTCGCAAACGGTATCTCCAGATTTTCTCCACAAACCACTTCCGATTCT 60
Query 61 TCCAAATTACTAAAAGTGTTTCATCCAAAACCCTATTCCTTGAAATTTCTATTTCTCAAA 120
|||||| ||| ||||| |||||||||||||||| | ||||||||||| | || | ||||
Sbjct 61 TCCAAAGTACCAAAAGAGTTTCATCCAAAACCCGAATCCTTGAAATTCCCATCCCCCAAA 120
Query 121 ACCCTAAATCCTACTAGGTTTTTCAAAGTCAGAGCCAATGATGGAACCGAA-CCATCTGA 179
|||||||||| |||||| ||||||||||||||||||| |||||||| ||| || |||||
Sbjct 121 ACCCTAAATCGGACTAGGGTTTTCAAAGTCAGAGCCAAAGATGGAACTGAATCC-TCTGA 179
Query 180 TAAACTTCAACAGTATTTCCAGAATCAAGATTACGATAAGAAATACGGATTC-CTTGAAA 238
||||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||
Sbjct 180 TAAACTTCAACAGTATTTCAAGAATCAAGATTACGTTAAGAAATACGGATTCAC-TGAAC 238
Query 239 ACATCGATTC-CTTCACAATCCCTAAAGGTTTATCTGAAGAAACGATTCGCTTGATATCG 297
| |||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 ATATCGATTCGC-TCACAATCCCTAACGGTTTATCTGAAGAAACGATTCGCTTGATATCG 297
Query 298 AAGTTGAAAAAGGAACCAGCTTGGATTCTTGAGTATAGGCTCAAAGCTTATGCTAAGTTT 357
|| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 298 AAATTGAAAAAGGAACCAACTTGGATTCTTGAGTTTAGGCTCAAAGCTTATGCTAAGTTT 357
Query 358 CTAAAATTAGAAGAACCTAAATGGTCAGATAATAGGTACCCTTTGCTTGATCTCCAAGAT 417
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 358 CTGAAATTAGAAGAACCTAAATGGTCAGATAATAGGTATCCTTTGCTTAATCTCCAAGAT 417
Query 418 ATGTGTTTTTACTCTGCTCCTAAAAAGAAACCAACTTTGAATAGTTCAGATATAGCTGAT 477
||||||| |||||||| |||| |||| | | ||| | | | | | ||
Sbjct 418 ATGTGTTATTACTCTGTTCCT-AAAA-AGA--AAC----CA-A---C---T-T---TG-- 456
Query 478 GAAGCTGATGATCCTAAGCTTCTTGAGGA-ATTTGATAGATTAGATGTTCCTTTAACAAA 536
| | | | |||||||| ||||||| || |||||||||||||||||||||| |||| |
Sbjct 457 G-A--T-A--ATCCTAAGGTTCTTGA-GATATTTGATAGATTAGATGTTCCTATAAC--A 507
Query 537 GAAGAAGAAATGTTCACCTAAAGTTGCGGTTGATGCGGTTTAT-AATAGTGAATCGATAG 595
|||||||||||||| ||||| ||||||||||||||||||| | ||||||||||| ||||
Sbjct 508 -AAGAAGAAATGTTCTCCTAAGGTTGCGGTTGATGCGGTTT-TCAATAGTGAATCTATAG 565
Query 596 CTATTACTAATAAGGAGCCTCTAGAGAAGTCAGGTGTGATCTTCTGTTCGATATCCGAAG 655
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 566 CTATCACTAATAAGGAGCCTCTAGAGAAGTCAGGTGTGATCTTTTGTTCGATATCCGAAG 625
Query 656 CTATAAGGAAGTATCCGGATTTGATCAAGAAGTATTTAGGAAGAGTTGTGCCTAGTGATG 715
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CTATTAGGAAGTATCCGGCTTTGATCAAGAAGTATTTAGGAAGAGTTGTGCCTAGTGATG 685
Query 716 ATAACTACTACGCGGCTTTGAATACCGCGGTTTTCAGCGATGGATCGTTCTGTTATATAC 775
|||| |||||||||||||||||| | ||||||||||||||||| || ||||||||| |||
Sbjct 686 ATAATTACTACGCGGCTTTGAATTCTGCGGTTTTCAGCGATGGGTCTTTCTGTTATGTAC 745
Query 776 CGAAAAACACTAGATGTCCGATGCCTCTTTCGAGTTATTTTCGGATGAATTCTATTGAAA 835
| |||||||| ||||||| ||||||| ||||||||||||| |||||||| | || |||
Sbjct 746 CAAAAAACACGAGATGTCTGATGCCTGTTTCGAGTTATTTCCGGATGAACGCGAT-GAAG 804
Query 836 AC-ACTGGTCAGTTTGAAAGAACTTTGATTGTTGCTGAGGAAGGTAGTTTTGTTGAGTAT 894
| |||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||
Sbjct 805 AGTACTGGTCAATTTGAAAGGACTTTGATTGTTGCTGAGGAAGGGAGTTATGTTGAGTAT 864
Query 895 TCAGAAGGATGCACTGCTATTTCTCATGACAAGAATCAGCTTCACGCTGCTGTTGTTGAG 954
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 865 TCAGAAGGATGCACTGCTATATCTCATGACAAGAATCAGCTTCACGCTGCGGTGGTTGAG 924
Query 955 CTCTATTGCGCTGAAGGAGCGGAGATTAAGTACTCGACGCGTGGTCTCTGCGCTGGTGAT 1014
||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||| |||
Sbjct 925 CTCTATTGCGCGGAAGGAGCAGAGATTAAGTACTCGACGGGTGGTCTTTGCGCTGGGGAT 984
Query 1015 CGTTCCAAGATCTCATGGACTCAAGTTGAGAAAGGGT-TCGCGATAACTTGGAAGTATCC 1073
|| |||||||| ||||||||||| ||||||| |||| | || |||||||||||||||||
Sbjct 985 CGCTCCAAGATATCATGGACTCAGGTTGAGACGGGGTCT-GCAATAACTTGGAAGTATCC 1043
Query 1074 AAGCGTGGTTTTAGAAGGAGATGATTCCGTTGGAGAAGCTGAGAACGCTAGAAATACTTC 1133
|||||||||||||||||| |||||||| ||||| ||||| ||||| |||| |||||| ||
Sbjct 1044 AAGCGTGGTTTTAGAAGGCGATGATTCAGTTGGCGAAGCCGAGAATGCTAAAAATACATC 1103
Query 1134 GACTTGTGACTCGATGCTTATTGGTGACAATGCAGCCGCTAATACATATCCTTACATACA 1193
|||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1104 GACTTGCGACTCAATGCTTATCGGTGACAATGCAGCCGCTAATACCTATCCTTACATACA 1163
Query 1194 GGTAAAGAATCCATCGGCGAGAATAGAGCATGAAGCAAGTACTTCAAAGATTGGAGAAGA 1253
|||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 1164 GGTAAAGAATCCATCGGCGAGAGTGGAGCACGAAGCAAGTACTTCAAAGATTGGAGAAGA 1223
Query 1254 TCAGATTTTCTATTTTCAACAGAGAGGTATCGATCATGAGAGAGCATTAGCGGCAATGAT 1313
||||||||||||||| || |||||||| || ||||| |||||||||||||||||||||||
Sbjct 1224 TCAGATTTTCTATTTCCAGCAGAGAGGAATAGATCACGAGAGAGCATTAGCGGCAATGAT 1283
Query 1314 CTCTGGATTTTGCAGAGATGTTTTCAACAAGTTGCCTAATGAATTTGGAGCCGAAGTTAA 1373
||||||||| ||||||||||| ||||||||||| ||| ||||||||||||| ||||||||
Sbjct 1284 CTCTGGATTCTGCAGAGATGTCTTCAACAAGTTACCTGATGAATTTGGAGCTGAAGTTAA 1343
Query 1374 CCAGCTTTTGAGCATTAAGCTTGAAGGATCAGTGGGTT 1411
|||||||||||||||||||||||||||||||||||||
Sbjct 1344 TCAGCTTTTGAGCATTAAGCTTGAAGGATCAGTGGGTT 1381
> Ahg943249 jgi|Araly1|943249|scaffold_603793.1
Length=1711
Score = 881 bits (477), Expect = 0.0
Identities = 719/832 (86%), Gaps = 32/832 (4%)
Strand=Plus/Plus
Query 172 CCATCTGATAAACTTCAACAGTATTTCCAGAATCAAGATTACGATAAGAAATACGGATTC 231
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 247 CCA-CTGATAAACTTCAACAGTATTTCCAGAATCTTGATTACGATAAGAAATACGGATTC 305
Query 232 CTTGAAAACATCGATTCCTTCACAATCCCTAAAGGTTTATCTGAAGAAACGATTCGCTTG 291
||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 306 GTTGAAGATATCGATTCCTTCACAATCCCTAAAGGTTTATCTGAAGAAACGATTCGTTTG 365
Query 292 ATATCGAAGTTGAAA-AAGGAACCAGCTTGGATTCTTGAGTATAGGCTCAAAGCTTATGC 350
|| ||||| ||||| || ||||||| |||||| ||||||| |||| |||||||||||||
Sbjct 366 ATTTCGAAACTGAAAGAA-GAACCAGATTGGATGCTTGAGTTTAGGTTCAAAGCTTATGC 424
Query 351 TAAGTTTCTAAAATTAGAAGAACCTAAATGGTCAGATAATAGGTACCCTTTGCTTGATCT 410
||||||| | || ||||||||||||||||||||||||||||| || |||| | || || |
Sbjct 425 TAAGTTTTTGAAGTTAGAAGAACCTAAATGGTCAGATAATAGATATCCTTCGATTAATTT 484
Query 411 CCAAGATATGTGTTTTTACTCTGCTCCTAAAAAGAAACCAACTTTGAATAGTTCAGATAT 470
||| |||||||||| |||||||||||||||||||||||||||||||||||| | | |
Sbjct 485 CCAGGATATGTGTTATTACTCTGCTCCTAAAAAGAAACCAACTTTGAATAG-T----T-T 538
Query 471 AGCTGATGAAGCTGATGATCCTAAGCTTCTTGAGGAATTT-GAT-AGATTAGATGTTCCT 528
| |||||||| ||||||| |||||||||| | |||| ||| || |||| |||||||
Sbjct 539 A---GATGAAGC---TGATCCTCAGCTTCTTGA-GTATTTCGATAAG-TTAGGTGTTCCT 590
Query 529 TTAACAAAGAAGAAGAAATGTTCACCTAAAGTTGCGGTTGATGCGGTTTAT-AATAGTGA 587
||||| || || ||||| ||| |||| ||||| |||||||||| || | ||||||
Sbjct 591 TTAAC--AG-AGCAGAAACGTTTGGCTAATGTTGCCGTTGATGCGG-TTCTCGATAGTGT 646
Query 588 ATCGATAGCTATTACTAATAAGG-AGCCTCTAGAGAAGTCAGGTGTGATCTTCTGTTCGA 646
|||||||||| |||| || ||| || ||||||||||||| |||||||||||||||||||
Sbjct 647 TTCGATAGCTACTACTCAT-AGGAAGACTCTAGAGAAGTCCGGTGTGATCTTCTGTTCGA 705
Query 647 TATCCGAAGCTATAAGGAAGTATCCGGATTTGATCAAGAAGTATTTAGGAAGAGTTGTGC 706
|||| |||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||
Sbjct 706 TATCGGAAGCTATTAGGGAGTACCCGGATTTGATTAAGAAGTATTTAGGAAGAGTTGTGC 765
Query 707 CTAGTGATGATAACTACTACGCGGCTTTGAATACCGCGGTTTTCAGCGATGGATCGTTCT 766
||||||||||||| |||||||| |||||||| | ||||||||||||||||| || ||||
Sbjct 766 CTAGTGATGATAATTACTACGCATCTTTGAATTCTGCGGTTTTCAGCGATGGGTCTTTCT 825
Query 767 GTTATATACCGAAAAACACTAGATGTCCGATGCCTCTTTCGAGTTATTTTCGGATGAATT 826
||||||||||||| ||||||||||| ||||||||| |||||| |||||| ||||| ||
Sbjct 826 GTTATATACCGAAGAACACTAGATGCCCGATGCCTATTTCGACTTATTTCCGGATTAACG 885
Query 827 CTATTGAAAACACTGGTCAGTTTGAAAGAACTTTGATTGTTGCTGAGGAAGGTAGTTTTG 886
| | || | ||||||||||| || || |||||||||||||| |||||||| |||||||
Sbjct 886 CGA-TG--GAGACTGGTCAGTTCGAGAGGACTTTGATTGTTGCAGAGGAAGGGAGTTTTG 942
Query 887 TTGAGTATTCAGAAGGATGCACTGCTATTTCTCATGACAAGAATCAGCTTCACGCTGCTG 946
||||||||| |||||| || |||||| |||| |||||| ||||||||||||||||||||
Sbjct 943 TTGAGTATTTAGAAGGGTGTACTGCTCCTTCTTATGACACGAATCAGCTTCACGCTGCTG 1002
Query 947 TTGTTGAGCTCTATTGCGCTGAA-GGAGCGGAGATTAAGTACTCGACGCGTG 997
|||||||||||||||||| ||| ||||| ||||| |||||||| ||| |||
Sbjct 1003 TTGTTGAGCTCTATTGCGG-GAAAGGAGCTGAGATCAAGTACTCTACG-GTG 1052
Score = 139 bits (75), Expect = 5e-32
Identities = 102/115 (89%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 993 GCGTGGTCTCTGCGCTGGTGATCGTTCCAAGATCTCATGGACTCAAGTTGAGAAAGGGTT 1052
||||||||| || || || ||||| ||||| |||||||||||||| ||||||| |||| |
Sbjct 1112 GCGTGGTCTTTGTGCCGGGGATCGCTCCAAAATCTCATGGACTCAGGTTGAGACAGGG-T 1170
Query 1053 C-GCGATAACTTGGAAGTATCCAAGCGTGGTTTTAGAAGGAGATGATTCCGTTGG 1106
| || ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1171 CTGCAATAACTTGGAAGTATCCAAGCGTGGTTTTAGAAGGCGATGATTCAGTTGG 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5