BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44565.1 Length=576 Score E Sequences producing significant alignments: (Bits) Value Ahg887503 jgi|Araly1|887503|Al_scaffold_0066_1 333 8e-91 > Ahg887503 jgi|Araly1|887503|Al_scaffold_0066_1 Length=222 Score = 333 bits (180), Expect = 8e-91 Identities = 209/223 (94%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 84 ATGGGAATGAGTGGTTCTTCAGGTTTAGTTCATGTGCTCATGCTTCTTCTTCTTCTCAGC 143 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1 ATGGCAATGAGTGGTTCTTCAGGTTTAGGTCATGTGCTCATGCTTCTTCTTCTTCTTAGC 60 Query 144 ATCCTCTTTCACCATACCGAATCTACTTTGCCCTCTGAT-AGTGAACAACTCTCAATAAC 202 | |||||||||||||||| ||||| |||||||||||||| | |||||||||||||||||| Sbjct 61 ACCCTCTTTCACCATACCCAATCTGCTTTGCCCTCTGATCA-TGAACAACTCTCAATAAC 119 Query 203 TGGGAGGAGAATGATGGCGAATTATAAGCCCAATACAGCAGTAGAAACACCACCATCAAG 262 |||||||||||||||||||||||||||||||||| | || || |||||||||||||||| Sbjct 120 TGGGAGGAGAATGATGGCGAATTATAAGCCCAATGCTCCAATACAAACACCACCATCAAG 179 Query 263 AAGTAGACGAGGTGGTGGTGGTCAGAATACGGGAGCAGATTGA 305 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 180 AAGTAGACGAGGTGGTGGTGGTCAGAATACGGGAGGAGATTGA 222 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21061885128 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5