BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44565.1

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg887503 jgi|Araly1|887503|Al_scaffold_0066_1                       333    8e-91


> Ahg887503 jgi|Araly1|887503|Al_scaffold_0066_1
Length=222

 Score =  333 bits (180),  Expect = 8e-91
 Identities = 209/223 (94%), Gaps = 2/223 (1%)
 Strand=Plus/Plus

Query  84   ATGGGAATGAGTGGTTCTTCAGGTTTAGTTCATGTGCTCATGCTTCTTCTTCTTCTCAGC  143
            |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct  1    ATGGCAATGAGTGGTTCTTCAGGTTTAGGTCATGTGCTCATGCTTCTTCTTCTTCTTAGC  60

Query  144  ATCCTCTTTCACCATACCGAATCTACTTTGCCCTCTGAT-AGTGAACAACTCTCAATAAC  202
            | |||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||
Sbjct  61   ACCCTCTTTCACCATACCCAATCTGCTTTGCCCTCTGATCA-TGAACAACTCTCAATAAC  119

Query  203  TGGGAGGAGAATGATGGCGAATTATAAGCCCAATACAGCAGTAGAAACACCACCATCAAG  262
            |||||||||||||||||||||||||||||||||| |  || || ||||||||||||||||
Sbjct  120  TGGGAGGAGAATGATGGCGAATTATAAGCCCAATGCTCCAATACAAACACCACCATCAAG  179

Query  263  AAGTAGACGAGGTGGTGGTGGTCAGAATACGGGAGCAGATTGA  305
            ||||||||||||||||||||||||||||||||||| |||||||
Sbjct  180  AAGTAGACGAGGTGGTGGTGGTCAGAATACGGGAGGAGATTGA  222



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21061885128


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5