BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44575.1

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg915732 jgi|Araly1|915732|Al_scaffold_0008_483                     302    2e-81


> Ahg915732 jgi|Araly1|915732|Al_scaffold_0008_483
Length=216

 Score =  302 bits (163),  Expect = 2e-81
 Identities = 202/220 (92%), Gaps = 5/220 (2%)
 Strand=Plus/Plus

Query  38   ATGGAAGAGAAGAGTGCTTCACAATTGGGACTTGTGGTGTTTCTTCT-ATTGTTTCTTTT  96
            |||||| |||||||||||||||||||||| |||||| ||||||||||  ||| |||||||
Sbjct  1    ATGGAAAAGAAGAGTGCTTCACAATTGGGGCTTGTGTTGTTTCTTCTGGTTG-TTCTTTT  59

Query  97   GGTCCCAACCCATACGGAGTCTTCCCTGCCTTCTCAACAAGAATCACTCCCAGTGATCGG  156
            |||||||||||||||||||||| | || |||||||||||||||||||||| |||||||||
Sbjct  60   GGTCCCAACCCATACGGAGTCTGCTCTTCCTTCTCAACAAGAATCACTCCTAGTGATCGG  119

Query  157  ATCGTCAAGGAGGTTGATGAGTACCTATAAGACCAACAGTAACATAGATTTTGAGGGATC  216
            |   ||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct  120  A---TCAAGGAAGTTGATGAGTAGCTATAAGACCAATAGTAACATAGATTTTGGGGGATC  176

Query  217  AATCAGTGGACAAGCCGGTGGTGGTCAACAAAATCCCTAG  256
            ||||||||||||||||||||||||| ||||||||||||||
Sbjct  177  AATCAGTGGACAAGCCGGTGGTGGTAAACAAAATCCCTAG  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17093703872


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5