BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44575.1 Length=472 Score E Sequences producing significant alignments: (Bits) Value Ahg915732 jgi|Araly1|915732|Al_scaffold_0008_483 302 2e-81 > Ahg915732 jgi|Araly1|915732|Al_scaffold_0008_483 Length=216 Score = 302 bits (163), Expect = 2e-81 Identities = 202/220 (92%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 38 ATGGAAGAGAAGAGTGCTTCACAATTGGGACTTGTGGTGTTTCTTCT-ATTGTTTCTTTT 96 |||||| |||||||||||||||||||||| |||||| |||||||||| ||| ||||||| Sbjct 1 ATGGAAAAGAAGAGTGCTTCACAATTGGGGCTTGTGTTGTTTCTTCTGGTTG-TTCTTTT 59 Query 97 GGTCCCAACCCATACGGAGTCTTCCCTGCCTTCTCAACAAGAATCACTCCCAGTGATCGG 156 |||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||| Sbjct 60 GGTCCCAACCCATACGGAGTCTGCTCTTCCTTCTCAACAAGAATCACTCCTAGTGATCGG 119 Query 157 ATCGTCAAGGAGGTTGATGAGTACCTATAAGACCAACAGTAACATAGATTTTGAGGGATC 216 | ||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||| Sbjct 120 A---TCAAGGAAGTTGATGAGTAGCTATAAGACCAATAGTAACATAGATTTTGGGGGATC 176 Query 217 AATCAGTGGACAAGCCGGTGGTGGTCAACAAAATCCCTAG 256 ||||||||||||||||||||||||| |||||||||||||| Sbjct 177 AATCAGTGGACAAGCCGGTGGTGGTAAACAAAATCCCTAG 216 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17093703872 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5