BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G44580.1

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948645 jgi|Araly1|948645|scaffold_800532.1                        424    5e-118


> Ahg948645 jgi|Araly1|948645|scaffold_800532.1
Length=344

 Score =  424 bits (229),  Expect = 5e-118
 Identities = 306/342 (89%), Gaps = 10/342 (3%)
 Strand=Plus/Plus

Query  1    aaagagagaaaaagagatggaaaga-aaaaagTTTTCTTCAAAATTTATTCATTTGCTCA  59
            ||||| |||| |||||||||||| | |||| |||||||||||| | ||||||||||||||
Sbjct  5    AAAGAAAGAATAAGAGATGGAAA-ATAAAACGTTTTCTTCAAACTCTATTCATTTGCTCA  63

Query  60   TTGTGTTTTTGCTTCTTTGTACGTTTCTTTCTCGTACCGAATCTGCTCTTCCTTATCACC  119
            |||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||
Sbjct  64   TTGTGTTTTTGCTTCTTTGTACCTTTCTTTCCCGTACCGAATCTGCTCGTCCTTCTCACC  123

Query  120  ATGAACT-GT-TC--T--TGGGGAGGAAGCGGATGAATTATTATAAGCCCAACAGTGCCA  173
            |||||||  | ||  |    ||||||| |  ||||| | |||||||| |||| |||||||
Sbjct  124  ATGAACTACTCTCAATCACCGGGAGGACGATGATGAGTAATTATAAGACCAATAGTGCCA  183

Query  174  TAGGAACACCATCATCAACTAGTGACCACGCTCCAGGCAGTAATGGGAGGAAGTTGATGA  233
            ||||||||||||||||||| ||| |||| ||||||||| ||||||||||||| |||||||
Sbjct  184  TAGGAACACCATCATCAACCAGTAACCATGCTCCAGGCGGTAATGGGAGGAAATTGATGA  243

Query  234  GTATATATAGACCCAATGGAGACATATTTACAGGACCATCAGGCAGTGGGCATGGTGGGG  293
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct  244  GTATATATAGACCCAATGGAGACATATTTACAGGACCATCAGGCAGTGGACATGGTGGTG  303

Query  294  GTCGCACTCCAGCCCCCTAGTATATATATATTAATGTGTAAT  335
            ||||||||||||||||||||||||||||| | ||||||||||
Sbjct  304  GTCGCACTCCAGCCCCCTAGTATATATAT-T-AATGTGTAAT  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19802750691


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5