BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44580.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value Ahg948645 jgi|Araly1|948645|scaffold_800532.1 424 5e-118 > Ahg948645 jgi|Araly1|948645|scaffold_800532.1 Length=344 Score = 424 bits (229), Expect = 5e-118 Identities = 306/342 (89%), Gaps = 10/342 (3%) Strand=Plus/Plus Query 1 aaagagagaaaaagagatggaaaga-aaaaagTTTTCTTCAAAATTTATTCATTTGCTCA 59 ||||| |||| |||||||||||| | |||| |||||||||||| | |||||||||||||| Sbjct 5 AAAGAAAGAATAAGAGATGGAAA-ATAAAACGTTTTCTTCAAACTCTATTCATTTGCTCA 63 Query 60 TTGTGTTTTTGCTTCTTTGTACGTTTCTTTCTCGTACCGAATCTGCTCTTCCTTATCACC 119 |||||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||||| Sbjct 64 TTGTGTTTTTGCTTCTTTGTACCTTTCTTTCCCGTACCGAATCTGCTCGTCCTTCTCACC 123 Query 120 ATGAACT-GT-TC--T--TGGGGAGGAAGCGGATGAATTATTATAAGCCCAACAGTGCCA 173 ||||||| | || | ||||||| | ||||| | |||||||| |||| ||||||| Sbjct 124 ATGAACTACTCTCAATCACCGGGAGGACGATGATGAGTAATTATAAGACCAATAGTGCCA 183 Query 174 TAGGAACACCATCATCAACTAGTGACCACGCTCCAGGCAGTAATGGGAGGAAGTTGATGA 233 ||||||||||||||||||| ||| |||| ||||||||| ||||||||||||| ||||||| Sbjct 184 TAGGAACACCATCATCAACCAGTAACCATGCTCCAGGCGGTAATGGGAGGAAATTGATGA 243 Query 234 GTATATATAGACCCAATGGAGACATATTTACAGGACCATCAGGCAGTGGGCATGGTGGGG 293 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 244 GTATATATAGACCCAATGGAGACATATTTACAGGACCATCAGGCAGTGGACATGGTGGTG 303 Query 294 GTCGCACTCCAGCCCCCTAGTATATATATATTAATGTGTAAT 335 ||||||||||||||||||||||||||||| | |||||||||| Sbjct 304 GTCGCACTCCAGCCCCCTAGTATATATAT-T-AATGTGTAAT 343 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19802750691 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5