BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44650.1 Length=1201 Score E Sequences producing significant alignments: (Bits) Value Ahg494519 jgi|Araly1|494519|fgenesh2_kg.8__335__AT5G44650.1 1777 0.0 > Ahg494519 jgi|Araly1|494519|fgenesh2_kg.8__335__AT5G44650.1 Length=1194 Score = 1777 bits (962), Expect = 0.0 Identities = 1127/1205 (94%), Gaps = 17/1205 (1%) Strand=Plus/Plus Query 3 AATAGTAATTTTATAGTATTATCCAAGTAGCAGTTG-TTCGGAGGCTATCTACATGTCTC 61 |||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| || Sbjct 1 AATAGTAATTTTCCAGTATTATCCAATTAGCAGTTGTTTC-GAGGCTATCTACATGTATC 59 Query 62 AGCCACTCGTATTATTCTCCAATCTATAAAAATTC-AAATTTTCAATCT-CCCTTTCTTA 119 |||||||||||||||||||||||||| |||||||| ||||||||||| | |||||| ||| Sbjct 60 AGCCACTCGTATTATTCTCCAATCTAGAAAAATTCAAAATTTTCAATTTCCCCTTTTTTA 119 Query 120 AGATTAAAAGTGGCAAAGTTGAGATTTTG-ATCGTCTTCTTCCTCTGGAAATTTCAATCG 178 |||||||| || |||| |||| | |||| ||||||||||||||| || ||||||||||| Sbjct 120 AGATTAAACTTGACAAA-TTGATAATTTGAATCGTCTTCTTCCTCCGGGAATTTCAATCG 178 Query 179 AAACTATATCTTCAGAGATGCAGAATCTGTGAAATTGTAGAAACGAATTTCACAtttttt 238 |||||||||| |||||||||||||||||||||| || || | |||||||| || |||||| Sbjct 179 AAACTATATCCTCAGAGATGCAGAATCTGTGAATTTATACAGACGAATTTTAC-TTTTTT 237 Query 239 tttGAAGAAATGACGACGCAGATATTTCAGTTGCCGTTAAAGTACTGTGCTTCGAGTTTT 298 |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 238 TTTGAAGAAATGGTGACGCAGATATTTCAGTTGCCGTTACAGTACTGTGTTTCGAGTTTT 297 Query 299 TCTTCCACCGGCCAACGGAATTACGGTGCTTCTTCTTCGCCGTCTCCGATTGTAATTTGT 358 |||||| ||||| ||||||||||||||| |||||| |||||| ||||| |||| |||||| Sbjct 298 TCTTCCGCCGGCAAACGGAATTACGGTGTTTCTTCGTCGCCGACTCCGGTTGTTATTTGT 357 Query 359 AAGAGTAATGGAATTTCCGATGGTCTTTGGGTGAAGCGGAGGAAGAACAATCGGAGATTT 418 |||||||||||||||||||||| ||||||||| |||||||||| ||| |||| |||||| Sbjct 358 AAGAGTAATGGAATTTCCGATGATCTTTGGGTTAAGCGGAGGAGGAAGAATCAGAGATTC 417 Query 419 GGTAGTTTAATAGTTAAGCAGGAGAAAGGAGACGTGACGGAGATTCGAGTTCCGGTTCCG 478 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GGTAGTGTGATAGTTAAGCAGGAGAAAGGAGACGTGACGGAGATTCGAGTTCCGGTTCCG 477 Query 479 TTAACTTTGGAGCAACAAGAGAAGGAGAAACAAAATCGAGATGATGAAGAAGATGAAATC 538 ||||| ||||||||||||||||||||||||||||||||||||||||||| | | | | | Sbjct 478 TTAACGTTGGAGCAACAAGAGAAGGAGAAACAAAATCGAGATGATGAAG-A-A-G--A-C 531 Query 539 GATGAAGGAGATGTAGATCCTGAAGATCTCAAATACGTCAATGAAATCAAACGGGTAATT 598 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 532 GAAGAAGGAGAAGTAGATCCTGAAGATCTCAAATACGTCAATGAAATCAAACGGGT-ATT 590 Query 599 -GAGCTTCTTAGGAGGAATAGAGATATGATCTTCAGTGAGGTTAAGTTGACTATTATGAT 657 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 591 GGAGCTTCTTAGGAGGAATAGAGATATGATCTTCAGTGAGGTTAAGTTGACAATTATGAT 650 Query 658 TGAGGATCCAAGGGAACTGGAAAGAAGGAGGCTTCTTGGAATAGAAGATGCAGATACTCC 717 |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 651 TGAGGATCCAAGGGAAGTGGAAAGAAGGAGGCTGCTTGGAATAGAAGATGCAGATACTCC 710 Query 718 AAGCAGAGATGATTTGGCTGAAGC-CTTGGAACAGGTAAATGATGGGAAAATCCCTAAAG 776 ||| ||||| |||||||||||||| | |||| |||||||||||||||||||||||||||| Sbjct 711 AAGTAGAGAGGATTTGGCTGAAGCAC-TGGAGCAGGTAAATGATGGGAAAATCCCTAAAG 769 Query 777 ATCGTGCAACTCTTCGGATGCTGCATGAGGAAATGATCCGTTGGCCAAATTTAGAGGTTG 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 ATCGTGCAACTCTTCGGATGCTGCATGAGGAAATGATCCGTTGGCCAAATTTAGAGGTTG 829 Query 837 AGGTTTCAAAGAAGCAACGAGGAAAGTCAATGTACGCTAAATCCACAGACACTGGAATAG 896 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 830 AGGTTTCAAAGAAGCAACGAGGAAAATCAATGTACGCTAAATCCACAGACACCGGAATAG 889 Query 897 ATCCAAAAGAAGCAGCCAAGAGACTCAACGTCGAATGGGATTCAGCTGCTGCAATTGAAG 956 ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 890 ATCCAAAAGAAGCAGCCAAGAGACTCAACATAGAATGGGATTCAGCTGCTGCAATTGAAG 949 Query 957 AAGTCGATGTCGATGATGAACAAGGAGTAGTAACCAAAGTCGCGGGCTATGGAGCGTTGT 1016 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 950 AAGCCGATGTCGATGATGAACAAGGAGTAGTAACCAAAGTCGCGGGCTATGGAGCATTGT 1009 Query 1017 ACTTCGTCTCAGCTTTACCAGTTATCATTGGTATCTCTGTTGTATTAATTTTGTTTTACA 1076 |||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1010 ACTTTGTCTCGGCTTTACCAGTTATCATCGGTATCTCTGTTGTATTAATCTTGTTTTACA 1069 Query 1077 ATTCCCTACAGTAGAGTCAAATCCATTTAGTTGTTATACACACCACCACCAATGACCCAT 1136 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1070 ATTCCCTTCAGTAGAGTCAAATCCATTTAGTTGTTATACACACCAGCACCAATGACCCAT 1129 Query 1137 CATTGATGTTTTGTAACTTAAGAACATGAAATGAGTTTTTCAATTATTTAATCATCTTCT 1196 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1130 CATTGATGTTTTGTAACTTAAGAACATGAAATGAATTTTTCAATTATTTAATCATCTTCT 1189 Query 1197 TCCTT 1201 ||||| Sbjct 1190 TCCTT 1194 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44832550392 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5