BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44670.1
Length=1983
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494517 jgi|Araly1|494517|fgenesh2_kg.8__333__AT5G44670.1 2601 0.0
Ahg492851 jgi|Araly1|492851|fgenesh2_kg.7__2284__AT4G20170.1 1007 0.0
> Ahg494517 jgi|Araly1|494517|fgenesh2_kg.8__333__AT5G44670.1
Length=1931
Score = 2601 bits (1408), Expect = 0.0
Identities = 1797/1974 (91%), Gaps = 70/1974 (4%)
Strand=Plus/Plus
Query 27 TCTCTTCCCTCTGTCGCTTCACTTTCCCTCTGCTTCATAGTTCATACGATTCTTCGATTC 86
|||||| ||||||||||||||||||| ||||||||| | | | |||| | || |||||
Sbjct 1 TCTCTTTCCTCTGTCGCTTCACTTTCTCTCTGCTTC---G-T-A-ACGA-T-TT-GATTC 51
Query 87 GTCTTCTTCAATCAGT------GAAGAAGAA-CTC-AAAAGATGGCTAAAGAGAGAGACC 138
||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||
Sbjct 52 ATCTTCTTCAATCAGTGAAGAAGAAGAAGAACCTCGAAAA-ATGGCTAAAGAGAGAGACC 110
Query 139 AAAACACTAAAG---ACAAAAACCTCCTCATCTGTTTCTTATGGAACTTCTCCGCCGAGC 195
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 AAAACACTAAAGACAACAAAAACCTCCTCATCTGTTTCTTATGGAACTTCTCCGCCGAGC 170
Query 196 TTAAGCTAGCTCTAATGGCGTTACTCGTTCTCTGCACTTTAGCTACTCTCCTCCC-TTTT 254
|||| || ||| |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 171 TTAAACTCGCTTTAATGGCGTTACTCGTTCTCTGCACTTTAGCTTCTCTCCTCCCATTTT 230
Query 255 CTACCTTCTTCTTTCTCCATCTCCGCTTCCGAACTCCGTTTCTGCATCTCACGCATCGCC 314
||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 231 -TACCTTCTTCTTTCTCCATCTCCGCCTCCGACCTCCGTTTCTGCATCTCACGTATCGCC 289
Query 315 GTAAACTCCACCTCCGTCAACTTCACCACCGTCGTCGAAAAGCCAGTCTTAGATAACGCT 374
|| |||||||||||||||||| | |||||| ||||||||||||||||||||| |||||
Sbjct 290 GTTAACTCCACCTCCGTCAAC-T--CCACCGCCGTCGAAAAGCCAGTCTTAGACAACGCC 346
Query 375 GTCAAGTTAACTGAGAAGCCGGTGTTGGATAACGGCG-T-T-AC---GAAACAGCCGTTA 428
|| | | ||||||||||||||| ||||||||| || | | || ||||| ||||||
Sbjct 347 GT-TA--TGACTGAGAAGCCGGTGCTGGATAACGCCGTTATGACTGAGAAACCTCCGTTA 403
Query 429 ACTGAAGAGAAGGTGTTAAATAACGGCGTTATTAAACGGACGTTTACTGGTTACGGCTGG 488
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 404 AGTGAAGAGACGGTGTTAAGTAACGGCGTTATTAAACGGACGTTTACTGGTTACGGCTGG 463
Query 489 GCAGCTTATAACTTCGTGTTAATGAACGCTTACAGAGGCGGCGTTAACACATTCGCCGTT 548
||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 464 GCAGCTTATAACTTCGTCTTAATGAACTCATACAGAGGCGGCGTTAACACATTCGCCGTT 523
Query 549 ATCGGTTTATCATCTAAACCACTTCACGTTTACTCTCATCCCACTTACCGTTGCGAATGG 608
||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 524 ATCGGTTTATCATCTAAACCACTTCACGTCTACGCTCATCCAACTTACCGTTGCGAATGG 583
Query 609 ATTCCACTAAACCAATCCGATAACCGGATTTTAACCGACGGTACCAAAATCTTAACCGAT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 ATTCCACTAAACCAATCCGATAACCGGATTTTAACCGACGGTACCAAAATCTTAACCGAT 643
Query 669 TGGGGTTACGGTAGAGTTTACACAACCGTCGTCGTAAACTGTACTTTTCCGTCAAACACC 728
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 644 TGGGGATACGGTAGAGTTTACACAACCGTCGTCGTAAACTGTACTTTTCCGTCAACCACC 703
Query 729 GTGATAAACCCTAAAAACACCGGAGGTACTCTTCTCCTCCACGCAACCACCGGAGATACA 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 704 GTGATAAACCCTAAAAACACCGGAGGTACTCTTCTCCTCCACGCAACCACCGGAGATTTA 763
Query 789 GACCGGAACATCACCGATTCAATTCCGGTACTCACCGAAACTCCAAACACCGTCGATTTT 848
|| |||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 764 GATCGGAACATCACCGATTCAATCCCAGTCCTCACCGAAACTCCAAACACCGTCGATTTC 823
Query 849 GCTCTCTACGAATCCAATC-TCCGCCGGCGAGAGAAGTACGATTATCTCTATTGTGGATC 907
| |||||||||||| ||| || |||| ||| | |||||||||||||||||||| |||||
Sbjct 824 ACCCTCTACGAATCCCATCGTC-GCCG-CGA-A-AAGTACGATTATCTCTATTGCGGATC 879
Query 908 TTCTCTCTACGGCAACTTATCACCACAGAGAATCAGAGAATGGATCGCTTACCATGTAAG 967
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 880 GTCTCTCTACGGAAACTTATCTCCACAGAGAATCAGAGAATGGATCGCTTACCATGTTAG 939
Query 968 GTTCTTCGGTGAAAGATCTCATTTTGTTCTACATGACGCCGGAGGGATTACAGAGGAAGT 1027
|||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 940 ATTCTTCGGAGAAAGATCTCATTTTGTTCTTCACGACGCCGGAGGGATTTCAGAGGAAGT 999
Query 1028 GTTTGAGGTTTTAAAGCCATGGATAGAGCTTGGGAGAGTTACTGTT-CATGATATTAGAG 1086
|||||||||||||||||||||||| |||||||||||||| || | | |||||||||| ||
Sbjct 1000 GTTTGAGGTTTTAAAGCCATGGATTGAGCTTGGGAGAGTGAC-GATACATGATATTAAAG 1058
Query 1087 AACAAGAGA-GATTTGATGGTTATTATCATAATCAATTCATGGTGGTGAATGATTGTTTG 1145
| ||||| | |||| |||||||||||||||||||| |||||| | |||||||||||||||
Sbjct 1059 ATCAAGA-ACGATTCGATGGTTATTATCATAATCAGTTCATGATTGTGAATGATTGTTTG 1117
Query 1146 CATAGGTATAGATTCATGGCGAAGTGGATGTTTTTCTTCGATGTTGATGAGTTTATTT-A 1204
|||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| || |
Sbjct 1118 CATAGGTATAGATTCATGACGAAGTGGATGTTCTTCTTTGATGTTGATGAGTTT-TTACA 1176
Query 1205 TGTTCCGGCGAAG-AGTTCGATTTCGTCGGTGATGGTATCTTTGGAGGAATATTCTCAGT 1263
|||||||| |||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1177 TGTTCCGGTGAAGGAGA-CGATTTCGTCGGTGATGGAATCTTTGGAGGAATATTCTCAGT 1235
Query 1264 TTACTATTGAACAGATGCCTATGAGTAGTCAGCTTTGTTACGACGGTGATGGTCCGGCGA 1323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1236 TTACTATTGAACAGATGCCTATGAGTAGTCAGCTTTGTTACGACGGTGATGGTCCGGCCA 1295
Query 1324 GGACTTACAGGAAATGGGGATTTGAGAAATTGGCGTATAGAGATGTGAAGAAAGTACCAC 1383
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 GAACTTACAGGAAATGGGGATTTGAGAAATTGGCGTATAGAGATGTGAAGAAAGTACCAC 1355
Query 1384 GACGGGATAGGAAGTATGCGGTTCAACCGCGGAACGTATTTGCGACAGGGGTTCACATGT 1443
||||||||||||| || |||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1356 GACGGGATAGGAAATACGCGGTTCAACCGCGTAATGTATTTGCGACAGGAGTTCACATGT 1415
Query 1444 CTCAGCATCTACAAGGGAAGACGTATCACAGAGCGGAAGGGAAAATACGCTATTTTCACT 1503
||||| |||||||||||||||| ||||| || ||||||||||| || || ||||||||||
Sbjct 1416 CTCAGAATCTACAAGGGAAGACATATCATAGGGCGGAAGGGAAGATCCGGTATTTTCACT 1475
Query 1504 ACCATGGTTCAATCTCGCAGCGTCGTGAGCCTTGTCGTCATCTTTATAACGGTACCCGTA 1563
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1476 ACCACGGTTCAATCTCGCAGCGTCGTGAGCCTTGTCGTCATCTTTATAATGGTACTCGTA 1535
Query 1564 TCGTTCATGAGAACAATCCTTACGTGCTTGATACCACAATGCGTGATATTGGTCTCGCGG 1623
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1536 TCGTTCATGAAAACAATCCTTACGTTCTTGATACCACAATGCGCGATATTGGTCTTGCGG 1595
Query 1624 TGAAGACGTTTGAGATTAGGACGATTGGAGATCGCTTGCTTAGGACGAGACAATGAAGGC 1683
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1596 TGAAGACGTTTGAGATTAGGACGATTGGAGATCGCTTGCTTAGGACAAGGCAGTGAAGAT 1655
Query 1684 AGGAGAAGAATGGTTAAAGACATGTTATCATCATTATGCGTTGTAACGTAAATCTTTTAG 1743
|||||||||||||||||||| |||||||||| | |||| ||||||||||||||||||||
Sbjct 1656 AGGAGAAGAATGGTTAAAGAGATGTTATCAT--T-ATGCATTGTAACGTAAATCTTTTAG 1712
Query 1744 AGTATTATTTAGGCGAATGTAACAATTTTCATGGTTTTTTGTTTAGTATATTCTTTTATT 1803
||||||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 1713 AGTATTATTTAGGTGAATGTAACAATTTTTATGGTTTTTC-TA-AGTATATTCTTTTATT 1770
Query 1804 GTATTATAAAATGGGTTCGTACA-TAG-AGAT--CATCATACAGCTCAGATTCTTGGTAT 1859
||||||||||||| |||| || | | | |||| ||||||||||||||||||||||||||
Sbjct 1771 GTATTATAAAATGTGTTCATAGAATCGTAGATATCATCATACAGCTCAGATTCTTGGTAT 1830
Query 1860 ATAAGCATCTTTTTTATGGGCTTTATAATTTTTTCCGTTATTTATGGAAAAGTGCTTTAT 1919
||||||||||||| ||||||||||||||| |||| | ||||||| |||||
Sbjct 1831 ATAAGCATCTTTTATATGGGCTTTATAAT----------ATTT-T--AAAAGTGTTTTAT 1877
Query 1920 ATAAATTAGTGAAAGTTGTTGTGGTCTTCCATGGATCTTTGTCGTGTTAATTAA 1973
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1878 ATGAATTAGTGAAAGTTGTTGTGGTCTTCGATGGATCTTTGTCGTGTTAATTAA 1931
> Ahg492851 jgi|Araly1|492851|fgenesh2_kg.7__2284__AT4G20170.1
Length=1753
Score = 1007 bits (545), Expect = 0.0
Identities = 1034/1262 (82%), Gaps = 65/1262 (5%)
Strand=Plus/Plus
Query 448 ATAACGGCGTTATTAAACGGACGTTTACTGGTTACGGCTGGGCAGCTTATAACTTCGTGT 507
||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 368 ATAACGGAGTTGTTAAACGGACGTTTACTGGTTACGGCTCTGCAGCTTATAACTTCGT-T 426
Query 508 T-AATGAACGCTTACAGAGGCGGCGTTAACACATTCGCCGTTATCGGTTTATCATCTAAA 566
| ||||| ||||||||||||||||||||| | |||||||||||||| |||||||| |||
Sbjct 427 TCAATGAGTGCTTACAGAGGCGGCGTTAACTCTTTCGCCGTTATCGGATTATCATCAAAA 486
Query 567 CCACTT-CACGTTTACTCTCATCCCACTTACCGTTGCGAATGGATTC-CACTAAAC-C-A 622
|| ||| ||||| ||| |||||| | ||| | ||||||||| || | | || | |
Sbjct 487 CC-CTTACACGTGTACGGTCATCCTTCCTACAGATGCGAATGG-GTCTCGTTTGACTCGA 544
Query 623 ATCCGATAACCGGATTTTAACCGA-C-GGTACCAAAATCTTAACCGATTGGGGTTACGGT 680
| | | | || | ||| || | | | ||| | |||||| |||||||||||||||||||
Sbjct 545 CT-CAAGATCC-GCTTTCAA-CAACCGGGT-CTAAAATCCTAACCGATTGGGGTTACGG- 599
Query 681 A--GAGTTTACACAACCGTCGTCGTAAACTGTACTTTTC-CGTCAAACACCG-TGATAAA 736
| || | || ||||| |||||||| |||||||| |||| | |||| | ||| | | ||
Sbjct 600 ACGGA-TCTATACAACAGTCGTCGTTAACTGTAC-TTTCTCATCAATCTCCGCCG-TGAA 656
Query 737 CCCTA-AAAACACCGGAGGTACTCTTC-TCCTCCACGCAACCACCGGAGATACAGACCGG 794
|| | ||||| |||| || |||| || |||||||||| |||||||||||| || | |
Sbjct 657 TCC-ACAAAACTCCGGCGGAACTC-TCATCCTCCACGCCACCACCGGAGATCCAAATCTC 714
Query 795 AA-CATCACCGATTCAATTCCGGTACTCACCGAAACT-CCAAACACCGTCGATTTTGCTC 852
|| | ||||||||||||| || || || |||||| || ||||| ||||||| ||| |
Sbjct 715 AATC-TCACCGATTCAATCCCAGTCCTAACCGAATCTCCCAAA-TCCGTCGA-TTT-CAA 770
Query 853 TCTACGAATCCAATCTCCGCCGGCGAGAGAAGTACGATTATCTCTATTGTGGATCTTCTC 912
||| | || || |||| || || ||||||||||||| ||||||||||| || ||||
Sbjct 771 TCT-C-TAT--AA-CTCC-ACGAAGA-AGAAGTACGATTACCTCTATTGTGGCTCGTCTC 823
Query 913 TCTACGGCAACTTATCACCACAGAGAATCAGAGAATGGATCGCTTACCATGTAAGGTTCT 972
||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 824 TCTACGGAAACTTATCTCCACAGAGAATCAGAGAATGGATCGCTTACCATGTTCGATTCT 883
Query 973 TCGGTGAAAGATCTCATTTTGTTCTACATGACGCCGGAGGGATTACA-GAGGAAGTGTTT 1031
|||| ||| | || ||||| || ||||| ||||||||||||||| || |||||||||||
Sbjct 884 TCGGAGAACGGTCACATTTCGTGCTACACGACGCCGGAGGGATT-CATGAGGAAGTGTTC 942
Query 1032 GAGGTTTTAAAGCCATGGATAGAGCTTGGGAGAGTTACTGTT-CATGATATTAGAGAACA 1090
|||||||||||||||||||| ||||| |||||||| || ||| |||||||| ||||| ||
Sbjct 943 GAGGTTTTAAAGCCATGGATTGAGCTAGGGAGAGTGAC-GTTACATGATATAAGAGATCA 1001
Query 1091 AGAGA-GATTTGATGGTTATTATCATAATCAATTCATGGTGGTGAATGATTGTTTGCATA 1149
||| | |||| ||||| |||||||||||||| |||||| | |||||||||||||||||||
Sbjct 1002 AGA-ACGATTCGATGGATATTATCATAATCAGTTCATGATTGTGAATGATTGTTTGCATA 1060
Query 1150 GGTATAGATTCATGGCGAAGTGGATGTTTTTCTTCGATGTTGATGAGTTTATTT-ATGTT 1208
|||||||||||||| ||||||||||||| ||||| ||||||||||||||| || |||||
Sbjct 1061 GGTATAGATTCATGACGAAGTGGATGTTCTTCTTTGATGTTGATGAGTTT-TTACATGTT 1119
Query 1209 CCGGCGAA-GAGTTCGATTTCGTCGGTGATGGTATCTTTGGAGGAATATTCTCAGTTTAC 1267
|||| ||| ||| |||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1120 CCGGTGAAAGAGA-CGATTTCGTCGGTGATGGAATCTTTGGAGGAGTATTCTCAGTTTAC 1178
Query 1268 TATTGAACAGATGCCTATGAGTAGTCAGCTTTGTTACGACGGTGATGGTCCGGCGAGGAC 1327
|||||||||||||||||||||||||| | ||||||| ||||||||||||||| || ||
Sbjct 1179 TATTGAACAGATGCCTATGAGTAGTCGGATTTGTTATTCCGGTGATGGTCCGGCCAGAAC 1238
Query 1328 TTACAGGAAATGGGGATTTGAGAAATTGGCGTATAGAGATGTGAAGAAAGTACCACGACG 1387
|||||||||||||||| |||||||| |||| ||||||||||| ||||| || ||| ||||
Sbjct 1239 TTACAGGAAATGGGGAATTGAGAAACTGGCATATAGAGATGTCAAGAAGGTTCCAAGACG 1298
Query 1388 GGATAGGAAGTATGCGGTTCAACCGCG-GAACGTATTTGCGACAGGGGTTCACATGTCTC 1446
|||| | || || ||||| || ||| | ||| ||||| |||||||| |||||||||||||
Sbjct 1299 GGATCGAAAATACGCGGTCCAGCCG-GAGAATGTATTCGCGACAGGCGTTCACATGTCTC 1357
Query 1447 AGCATCTACAAGGGAAGACGTATCACAGAG-CGGA-AGGGAAAATACGCTATTTTCACTA 1504
|| ||||||||||||| || || || | || | || || ||||| || || || || ||
Sbjct 1358 AGAATCTACAAGGGAAAACTTACCATA-AGGCCGAGAGC-AAAATCCGTTACTTCCATTA 1415
Query 1505 CCATGGTTCAATCTCGCAGCGTCGTGAGCCTTGTCGTCATCTTTATAACGGTACCCGTA- 1563
||||||||| ||||| || ||||| |||||||||||||| |||| ||||| | | || |
Sbjct 1416 CCATGGTTCGATCTCTCAACGTCGCGAGCCTTGTCGTCACCTTTTTAACGATTCTCG-AG 1474
Query 1564 TCGT-T-CATGAGAACAATCCTTACGTGCTTGATACCACAATGCGTGATATTGGTCTCGC 1621
| || | | ||||||| ||| || |||||||| || || || || || | || || ||
Sbjct 1475 TGGTATTC--GAGAACACTCCCTATGTGCTTGACACTACCATCCGCGACGTAGGCCTTGC 1532
Query 1622 GGTGAAGACGTTTGAGATT-AGGACGATTGGAGATCG-CTTGCTTAGGACGAGACAATGA 1679
|||| |||||| ||| || || ||||| || ||||| || |||| |||| |||||||||
Sbjct 1533 TGTGAGGACGTTCGAG-TTGAGAACGATCGGTGATCGGCT-GCTTCGGACAAGACAATGA 1590
Query 1680 AG 1681
||
Sbjct 1591 AG 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74542609465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5