BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G44980.1 Length=1592 Score E Sequences producing significant alignments: (Bits) Value Ahg948577 jgi|Araly1|948577|scaffold_800464.1 625 4e-178 Ahg915674 jgi|Araly1|915674|Al_scaffold_0008_425 556 1e-157 Ahg915671 jgi|Araly1|915671|Al_scaffold_0008_422 521 5e-147 Ahg948576 jgi|Araly1|948576|scaffold_800463.1 514 8e-145 Ahg915672 jgi|Araly1|915672|Al_scaffold_0008_423 488 5e-137 Ahg494488 jgi|Araly1|494488|fgenesh2_kg.8__304__AT5G44970.1 261 1e-68 Ahg494489 jgi|Araly1|494489|fgenesh2_kg.8__305__AT5G44950.1 250 2e-65 Ahg915673 jgi|Araly1|915673|Al_scaffold_0008_424 230 3e-59 Ahg915675 jgi|Araly1|915675|Al_scaffold_0008_426 189 5e-47 Ahg481654 jgi|Araly1|481654|fgenesh2_kg.4__714__AT2G27505.1 147 3e-34 > Ahg948577 jgi|Araly1|948577|scaffold_800464.1 Length=839 Score = 625 bits (338), Expect = 4e-178 Identities = 637/776 (82%), Gaps = 42/776 (5%) Strand=Plus/Plus Query 205 GTTCCTGGACTCGAATTATTCACCCTTCAATT-CACATATCCTGATCGCGAAGAAATCTT 263 ||||||||||| ||||| |||| | |||| | || ||||| | | |||||| ||| Sbjct 45 GTTCCTGGACTTAAATTACGCACCAGTGAATTCCCCA-ATCCT--T-GTGAAGAAGGCTT 100 Query 264 TGTAAGGTTTATGGACAGATTTATGGAGTTTAAGTG-CAGGTCACGCCTGAAAAAGTTC- 321 | |||||||||||||||||||||||||||||| || || ||||| | || |||||||| Sbjct 101 CGCAAGGTTTATGGACAGATTTATGGAGTTTAACTGCCA-GTCACACTTGGAAAAGTTCG 159 Query 322 ATGATAACGTATGTCGATTGTAAAGGTTATCGAGATCGATTAATGGAGTTGATCGGTACA 381 | |||||| ||| |||| || || || |||||||||||||| ||||| ||||||||||| Sbjct 160 A-GATAACTTATTTCGAATGCAATGGCTATCGAGATCGATTCATGGACCTGATCGGTACA 218 Query 382 CTGGTTGATCATGGACTTCAGCATTTGTATGTTTTTATGCATACTTTTGACAGAGTTGAT 441 ||||||||| |||| |||| || ||| ||||||| ||| |||||| ||||| |||| Sbjct 219 GTGGTTGATCGTGGAATTCAACACTTGGATGTTTTAATGTATACTTGCAACAGAAATGAT 278 Query 442 TTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGTCTCTTTGAAGCTTCATAACG-T 500 |||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||| | Sbjct 279 TTCATACGTCAGAACATTTACAAGAGCAAGACATTGGTCTCTTTGAACCTTG-TAAATAT 337 Query 501 AGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTG-G 559 |||||||||||| |||| |||||||||||||||||||||||||||||| || || | Sbjct 338 AGAGTTAAAGAAACCAGAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCATGCGTCTATG 397 Query 560 AGAATATTTGTCACGGTGAGGATGGTCCT-TTGGTTGTGGAGAAGCTCATCTCAGGATGT 618 || ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 398 C-AACGTTTGTTACGGTGAGGATGGTCCTATTG-TTGTGGAGAAGCTCATCTCAGGATGT 455 Query 619 TCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGATATTAGGACA-CATAAAGTTCT 677 ||||||||||||||||| | ||| |||||||||||| |||| || | || |||||||| Sbjct 456 CCTGTTCTTGAAGATCTTCAACTGCTTAGGCCTTTTGGTATTTTGA-ATCAAAAAGTTCT 514 Query 678 TCTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCTTT-AC----CTT--ACA--TTT 728 ||| |||||||| | || |||||||| ||||||||| || | ||| ||| ||| Sbjct 515 GCTGTTTCTGCGTATAAGGTCTCAGACACTGAAAAGCCTTCAAGTGTCTTTTACACCTTT 574 Query 729 TGCGATCTATAAGGATCG-TACAGATTTTTCAGTTGAGATTGATGCTCCA-AGACTCAAG 786 | ||| ||| | | | ||||||||||||||||||||||||| ||||| | ||||||| Sbjct 575 T---ATCAATACG-AGGGGTACAGATTTTTCAGTTGAGATTGATACTCCACA-ACTCAAG 629 Query 787 TATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTGGTAAAGAACCTGAGTTCCTTG 846 |||||||||||||||||| |||| || ||||||||| |||||||||| || ||||||||| Sbjct 630 TATATGACTGTTGAACAGTGTCACTCGGATAGCATTATGGTAAAGAAACTTAGTTCCTTG 689 Query 847 TTCAGCATCGACATTGGTACTAAATTTAATCCTTTGAGACATGAGGATCTAAGGATGCGT 906 ||||| |||||||||||| | ||||| |||||||||||||| ||| | | | Sbjct 690 TTCAGGATCGACATTGGTTCCAAATTGCATCCTTTGAGACATTTTGAT-T-----T---T 740 Query 907 AATGTTTTCTACGATTTTTTAACCGGGATATCTAGTGTAAAACATATGATCATCTG 962 ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 741 AATATTTTCCGTGATTTTTTAACCGGGATATCTAGTGTAAGACATATGATCATCTG 796 > Ahg915674 jgi|Araly1|915674|Al_scaffold_0008_425 Length=774 Score = 556 bits (301), Expect = 1e-157 Identities = 626/777 (81%), Gaps = 46/777 (6%) Strand=Plus/Plus Query 364 ATGGAGTTGATCGGTACACTGGTTGATCATGGACTTCAGCATTTGTATGTTT-TTA-TGC 421 |||||||||||| ||||| | ||||||| |||| |||| |||||| |||||| ||| || Sbjct 1 ATGGAGTTGATCTGTACAGTTGTTGATCGTGGAATTCAACATTTGGATGTTTGTTATTG- 59 Query 422 ATACTTTTGAC-AGAG-T-TGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGG 478 | ||| || | | || | || |||| ||| | ||||||||||||||||||||||||| Sbjct 60 -TTCTTCTGTCAAAAGATATGGTTTCTTGCGTGAGAACATTTACAAGAGCAAGACATTGG 118 Query 479 TCTCTTTGAAGCTTCAT-AACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCT 537 ||| |||||| ||| | || ||||||||||||||| || | |||||||||||||||||| Sbjct 119 TCTTTTTGAACCTT-TTCAATGTAGAGTTAAAGAATCCAAAGTTTGTTGTTTCTCTACCT 177 Query 538 TGTCTCAAGATCTTGAAACT-GG-AGAATATTTGTCACGGTGAGGATGGTCCTTTGGTTG 595 | |||||||||| || || || || | |||||| |||||||||||||||| ||||| Sbjct 178 TATCTCAAGATCATGCGTCTAGGCAG-A-GTTTGTCGCGGTGAGGATGGTCCTCTGGTTC 235 Query 596 TGGAGAAGCTCATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTG 655 | ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 236 TTGAGAAGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGATTAGGCCTTTTG 295 Query 656 ATA-TTAGGACACATAAAGTTCTT-CTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAG 713 ||| || ||| || |||||| || ||| |||||||||||||||||||||||||||||| Sbjct 296 ATACTT-TGACTCACAAAGTT-TTGCTGTTTCTGCGTGTGAGCTCTCAGACTCTGAAAAA 353 Query 714 CTTTACCTTACATTTTGCGATC-TATAAGGATCG-TACAGATTTTTCAGTTGAGATTGAT 771 | || ||| ||||||||| | ||||||| | | ||||||||||||||||||||||||| Sbjct 354 CCTTGGTTTATATTTTGCGA-CATATAAGGGT-GATACAGATTTTTCAGTTGAGATTGAT 411 Query 772 GCTCCAAGACTCAAGTATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTGGTAAAG 831 |||||| |||||||||||||||||||| || | | ||||||||||| ||||||||||||| Sbjct 412 GCTCCACGACTCAAGTATATGACTGTTAAAGACATTCAATCTGATAACATTGTGGTAAAG 471 Query 832 AACCTGAGTTCCTTGTTCA-GCATCGACATTGGTACTAAATTTAATCCTTTGAGACATGA 890 |||||||| |||||||||| | ||| ||||| |||| |||| || ||| | ||||| | | Sbjct 472 AACCTGAGCTCCTTGTTCATG-ATCAACATTCGTACCAAATATATTCCATCGAGACCTAA 530 Query 891 GGA-TCTAAGGATGCGTAATGTTTTCTACGATTTTTTAACCGGGATATCTAGTGTAAAAC 949 ||| | ||| | ||| ||| | |||||||| ||||| ||||||||||||| || Sbjct 531 GGACTTTAAA-A-----AAT-TTTG-T--GATTTTTTTACCGGCATATCTAGTGTAAGAC 580 Query 950 ATATGATCATCTGTT-TGTGGAGTCTCCAGAGGTTTT-CTCCTTATTCAAAACC-CGGAC 1006 ||||||| ||| | || | ||| ||||| ||| | ||| ||| | ||| ||||| Sbjct 581 ATATGATAATC-GACCTGCCTATTCTAGAGAGGCTTTAC-CCTAATT-ACAACTTCGGAC 637 Query 1007 TGATTCCCAAATTCCAGAACTTGTATCATTTAAAAGCACAGATGTGGAGCTCATCAAC-A 1065 |||||||||||||| ||||||||| |||| | || || | | | ||||| | | Sbjct 638 CGATTCCCAAATTCCTTAACTTGTATTATTTGGAGGCTGAGGTCAGCCGATCATCG-CTA 696 Query 1066 CA-CTTATTGGAAGCGTTTCTTGAGAGCTGC-CCAAATCTGAAAAACCTCATCTTGG 1120 || || |||| || |||||||| |||| | ||||||||||||| |||||| |||| Sbjct 697 CAACT-ATTGTCGGCCTTTCTTGAAAGCT-CTCCAAATCTGAAAACCCTCATTTTGG 751 > Ahg915671 jgi|Araly1|915671|Al_scaffold_0008_422 Length=807 Score = 521 bits (282), Expect = 5e-147 Identities = 566/698 (81%), Gaps = 39/698 (6%) Strand=Plus/Plus Query 364 ATGGAGTTGATCGGTACACTGGTTGATCATGGAC-TTCAGCATTTGTATGTTTTTATGCA 422 |||||||||||| || | ||||||||| ||| | |||| |||||| | ||||||| | | Sbjct 1 ATGGAGTTGATCAATAGAGTGGTTGATCTTGG-CATTCAACATTTGGAGGTTTTTAAGTA 59 Query 423 TACTT-TTGACAG-AGT-TGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGT 479 | ||| | | | | | | || ||||| ||||||||||||||||||||||||||||||| Sbjct 60 TCCTTGTAG-C-GCA-TATGGTTTCATGTGTCAAAACATTTACAAGAGCAAGACATTGGT 116 Query 480 CTCTTTGAAGCTTCAT-AACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTT 538 ||||||||| ||| | || |||||||||||||| |||| ||||| ||||||||||||| Sbjct 117 CTCTTTGAACCTT-GTAAATATAGAGTTAAAGAATCCAGAGTTTGTGGTTTCTCTACCTT 175 Query 539 GTCTCAAGATCTTGAAACTGGAGAATATTTGTCACGGTGAGGATGGTCCTTTGGTTGTGG 598 ||||||| ||| || | | || ||||||||||||||||||||||||||||||||| Sbjct 176 GTCTCAAAATCATGCATTTATTTAACGTTTGTCACGGTGAGGATGGTCCTTTGGTTGTGG 235 Query 599 AGAAGCTCATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGATA 658 ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| | | Sbjct 236 AGAGGCTCATCTCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGATTAGGCCTTTTAACA 295 Query 659 TTAGGACACATAAAG-T-T------C-TT---CTGCTTCTGCGTGTGAGCTCTCAGACTC 706 || |||| || |||| | | | || ||| |||||| |||||| |||||||||| Sbjct 296 TTTGGACTCAAAAAGTTCTCAAAAACTTTAAGCTGTTTCTGCATGTGAGGTCTCAGACTC 355 Query 707 TGAAAAGCTTTACCTTACATTTTGCGATCTATAAGGATCG-TACAGATTTTTCAGTTGAG 765 |||||||| || ||| ||||||| || ||| || | | |||||||||||| |||||| Sbjct 356 TGAAAAGCCTTGGTTTATATTTTGCTATGAATAGGGGT-GATACAGATTTTTCTGTTGAG 414 Query 766 ATTGATGCTCCAAGACTCAAGTATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTG 825 |||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| | Sbjct 415 ATTGATGCTCCAAGACTCAAGTATATGAGTGTTGAACAGAGTCAAACGGATAGCATTGCG 474 Query 826 GTAAAGAACCTGAGTTCCTTGTTCAGCATCGACATTGGTACTAA-ATTTAATCCTTTGAG 884 ||||||||| |||||||||||||||| || |||||| ||| | | | | |||| | ||| Sbjct 475 GTAAAGAACTTGAGTTCCTTGTTCAGGATTGACATTCGTA-TCAGAGATCATCCATCGAG 533 Query 885 AC-ATGAGGATCTAAGGATGCGTAATGTTTTCTACGATTTTTTAACCGGGATATCTAGTG 943 || | || ||| || | ||| |||||| ||||||||||||||||||||||||| Sbjct 534 ACCA-GATGAT-TA----T----AATATTTTCTGTGATTTTTTAACCGGGATATCTAGTG 583 Query 944 TAAAACATATGATCATCTGT-TTGTGGAGTCTCCAGAGGTTTTCTCCTTATTCAAAACCC 1002 ||| ||||||||| |||| || |||||||| ||||| ||| || || ||| |||| Sbjct 584 TAAGACATATGATAATCTACATT-TGGAGTCTAGAGAGGCTTTATCGTTCTTCGAAACTT 642 Query 1003 GGACTGATTCCCAAATTCCAGAACTTGTATCATTTAAA 1040 || |||||| |||||||| |||||||| |||||||| Sbjct 643 AAACCGATTCCTAAATTCCATAACTTGTACCATTTAAA 680 > Ahg948576 jgi|Araly1|948576|scaffold_800463.1 Length=720 Score = 514 bits (278), Expect = 8e-145 Identities = 481/578 (83%), Gaps = 17/578 (3%) Strand=Plus/Plus Query 309 CCTGAAAAAGTTCATGATAACGTATGTCGATTGTAAAGGTTATCGAGATCGATTAATGGA 368 |||| ||||||||| ||||| ||||| ||| || || ||||||||||||||||| ||||| Sbjct 3 CCTGCAAAAGTTCAAGATAATGTATGACGAATGCAATGGTTATCGAGATCGATTCATGGA 62 Query 369 GTTGATCGGTACACTGGTTGATCATGGACTTCAGCATTTGTATGTTTTTATGCATACTTT 428 ||| ||||||| ||||||||| |||| |||| || ||| |||| |||||| ||| || Sbjct 63 CCTGACCGGTACAGTGGTTGATCGTGGAATTCAACACTTGGATGTCTTTATGAATAGTTG 122 Query 429 TGACAGAGT-TGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGTCTCTTTGA 487 | ||| | | |||||| ||| | ||||||||||||||||||||||||||||||||| Sbjct 123 CAAAAGA-TATAATTTCATGCGTGAGAACATTTACAAGAGCAAGACATTGGTCTCTTTGT 181 Query 488 AGCTTCATAACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTTGTCTCAAGA 547 |||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||||| Sbjct 182 CGCTTTATAACGTAGAGTTAAAGAATCCAGAGTTTGTTGTTTCTCTAGCTTGTCTCAAGA 241 Query 548 TCTTGAAACTG-GAGAATATTTGTCACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTC 606 || || | ||| | || ||||| ||||||||||||||||||||| |||||||||||| Sbjct 242 TCATGCATCTGTGC-AACGTTTGTTACGGTGAGGATGGTCCTTTGGATGTGGAGAAGCTT 300 Query 607 ATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGATATTAGGACA 666 || ||||||||| ||||||||||||||||| ||||| |||||| |||| ||||| || Sbjct 301 ATATCAGGATGTCCTGTTCTTGAAGATCTTAAGCTGGTTAGGCTTTTTAATATTTTGAGT 360 Query 667 CATAAA-GTTCTTCTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCTTTACCTT-AC 724 || | | ||||| ||| || |||||||||||||||||||| || ||||| || | || | Sbjct 361 CA-AGATGTTCTGCTGTTTTTGCGTGTGAGCTCTCAGACTATGGAAAGCCTT-CGTTTAT 418 Query 725 ATTTTGCGATC--TA-TA-AGGATCGTACAGATTTTTCAGTTGAGATTGATGCTCCAAGA 780 ||||||| || || || ||| | ||||||||||||||||||||||| ||||||||||| Sbjct 419 ATTTTGCCATAGATAATACAGG-TGGTACAGATTTTTCAGTTGAGATTAATGCTCCAAGA 477 Query 781 CTCAAGTATATGAC-TGTTGAACAGAGTCAATCTGATAGCATTGTGGTAAAGAACCTGAG 839 |||||||||||||| |||| | |||||| || |||||| ||| |||||||||||||||| Sbjct 478 CTCAAGTATATGACATGTT-ATGAGAGTCTATTTGATAGAATTATGGTAAAGAACCTGAG 536 Query 840 TTCCTTGTTCAGC-ATCGACATTGGTACTAAATTTAAT 876 ||| ||||| | | |||||||| ||| |||| |||| Sbjct 537 TTCTTTGTTTA-CTATCGACATCAATACCAAATATAAT 573 > Ahg915672 jgi|Araly1|915672|Al_scaffold_0008_423 Length=510 Score = 488 bits (264), Expect = 5e-137 Identities = 407/474 (86%), Gaps = 18/474 (4%) Strand=Plus/Plus Query 364 ATGGAGTTGATCGGTACACTGGTTGATCATGGACTTCAGCATTTGTATGTTT-TTATGCA 422 |||||||||||| ||||| | ||||||| |||| |||| |||||| |||||| |||| | Sbjct 1 ATGGAGTTGATCTGTACAGTTGTTGATCGTGGAATTCAACATTTGGATGTTTGTTAT-TA 59 Query 423 TACTTTTGACAGAGT-TGATTTCAAACGTCAAAACATTTACAAGAGCAAGACATTGGTCT 481 | | ||| | ||| | || ||||| ||| | |||||||||||||||||||||||||||| Sbjct 60 TTC-TTT-A-AGA-TATGGTTTCATGCGTGAGAACATTTACAAGAGCAAGACATTGGTCT 115 Query 482 CTTTGAAGC--TTCATAACGTAGAGTTAAAGAATTCAGACTTTGTTGTTTCTCTACCTTG 539 ||||||||| |||| | | ||||||||||||| |||| ||||||| |||||||||||| Sbjct 116 CTTTGAAGCTTTTCA-ATC-TAGAGTTAAAGAAACCAGAGTTTGTTGCTTCTCTACCTTG 173 Query 540 TCTCAAGATCTTGAAACT-GG-AGAATATTTGTCACGGTGAGGATGGTCCTTTGGTTGTG 597 |||||||||| || | || || || | |||||| ||||||||||||||||||||||||| Sbjct 174 TCTCAAGATCATGCATCTAGGCAG-A-GTTTGTCGCGGTGAGGATGGTCCTTTGGTTGTG 231 Query 598 GAGAAGCTCATCTCAGGATGTTCTGTTCTTGAAGATCTTGAGCTGATTAGGCCTTTTGAT 657 ||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||||| Sbjct 232 GAGAAGCTCATCTCAGGATGTCCTGCTCTTGAATATCTTAAGCTGATTAGGCCTTTTGAT 291 Query 658 ATTAGGACACATAAAGTTCTTCTGCTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCTTT 717 ||| || || |||||||| ||| |||||||||||||||||||||||||||||||| || Sbjct 292 ATTTCGAGTCAAAAAGTTCTGCTGTTTCTGCGTGTGAGCTCTCAGACTCTGAAAAGCCTT 351 Query 718 ACCTTACATTTTGCGATCTATAAGGATCG-TACAGATTTTTCAGTTGAGATTGATGCTCC 776 ||| ||| |||| || |||||| | | |||||||||||||||||||||||||||||| Sbjct 352 GGTTTATATTATGCGTTCAATAAGGGT-GATACAGATTTTTCAGTTGAGATTGATGCTCC 410 Query 777 AAGACTCAAGTATATGACTGTTGAACAGAGTCAATCTGATAGCATTGTG-GTAA 829 | ||||||||||||||| |||| || ||||||||||||||| ||||||| |||| Sbjct 411 ACGACTCAAGTATATGATTGTTAAAGAGAGTCAATCTGATAACATTGTGAGTAA 464 > Ahg494488 jgi|Araly1|494488|fgenesh2_kg.8__304__AT5G44970.1 Length=1158 Score = 261 bits (141), Expect = 1e-68 Identities = 638/867 (74%), Gaps = 78/867 (9%) Strand=Plus/Plus Query 457 ATTTACAAGAGCAAGACATTGGTCTCTTTGAAGCTTCATA-ACGTAGAG-TTAAAGAATT 514 ||||| ||||||||||||||||| ||||| |||||| || ||||||| || |||| Sbjct 220 ATTTATAAGAGCAAGACATTGGTGTCTTTAAAGCTT-GTATGCGTAGAGCTT-GAGAACC 277 Query 515 CAGACTTTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTGGAGAATATTTG-TCAC 573 || | ||||||||||||||||||||||||||||||||| | || || || ||||| | | Sbjct 278 CAAAGTTTGTTGTTTCTCTACCTTGTCTCAAGATCTTGCATCTTGAAAAAATTTGGT-AT 336 Query 574 GGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTTCTGTTCTTGAAGAT 633 || | ||||||||||| ||||||||||| |||||| |||| ||| |||||||||||||| Sbjct 337 TGTTATGATGGTCCTTTAGTTGTGGAGAAACTCATCGCAGGGTGTCCTGTTCTTGAAGAT 396 Query 634 CTTGAGC-TGATTAGGCCTTT-TGATATTAGGACACATAAAGTTCTTC-TGCTTCTGCGT 690 ||| | | || | ||| || |||| ||| | | || | ||| | | ||| | | | Sbjct 397 CTT-ACCATGGTAAGGA-TTCATGATGC--GGATATACAA-GCTCTGCCT-CTTTTACAT 450 Query 691 GTGAGCTCTCAGACTCTGAAAAGCTTTACC-TT-ACAT-TTTGCGATCTATA-AGGATCG 746 ||||| |||| ||||||||| | ||| || || | || ||| || | | | || | Sbjct 451 GTGAGGTCTCTGACTCTGAAGATCTT--CCGTTTA-ATGTTTA--ATTTGGAGATGA-C- 503 Query 747 TAC-AGA--T-TTTTCAGTTGAGATTGATGCTCCAAGACTCAAGTATATGACTGTTGAA- 801 ||| ||| | |||| || |||||||||||||||| |||||||||| | | | || || Sbjct 504 TACTAGACCTATTTTG-GTGGAGATTGATGCTCCAAAACTCAAGTATCTAAGTTTTAAAG 562 Query 802 C-AGAGTCAATCTGATAGCATTGTGGTAAAGAACCTGAGTTCCTTGTTCA-GCATCGACA 859 | || | |||||||||| || |||||||||| |||||||| ||||||| | || ||| Sbjct 563 CTAG-G-CAATCTGATAAAATCATGGTAAAGAATCTGAGTTCATTGTTCAAG-ATAGACC 619 Query 860 TTGGTACTAAATTTA-----A-T-CCTTTGAGACATGAGGATCTAAGGATGCGTA-A--T 909 ||| |||| | ||| | | |||| || || | ||| |||||| | | | | | Sbjct 620 TTGATACTGATTTTGGCGGCAGTTCCTTGGA-ACCCCATGATTTAAGGAAGAGAAGAGAT 678 Query 910 GTT-TTCTACGATTTTTTAACCGGGATATCTAGTGTAAAACATATGATCATCTGTTTGTG 968 || ||| ||| || | || | || || ||||||| |||||||||||||| | | Sbjct 679 ATTATTCG-CGACGTTCTCACTTGTATTTCGAGTGTAAGACATATGATCATCTCTCAACG 737 Query 969 GAGTCTCCAGAGGTTTT-C-TCCTTATTCAAAACCCGGACTGATTCCCAAATTCCAGAAC 1026 | ||| |||||| | | | ||||||||||| ||||| ||||||||||||||| || Sbjct 738 TACTCT--AGAGGTCATACATGGTTATTCAAAACTCGGACCGATTCCCAAATTCCATCAC 795 Query 1027 TTGTAT-CATTTAAAAGCACAG-ATG-TGGAGCTCATCAACACA-CTTATTGGAAGCGTT 1082 | | ||||| || || | | || | ||| |||| ||| || |||| || || Sbjct 796 CTA-ACGCATTTGAAGGC-C-GCATTCTCCAGCACATCGTTACAACT-ATTGCTCGCCTT 851 Query 1083 TCTTGAGAGCTGCCCAAATCTGAAAAACCTCATCTTGGAAT-ATAATGTTG-AATTGGAT 1140 ||||||||||||||||||||| ||||||||||| ||||| | || |||| || ||| Sbjct 852 TCTTGAGAGCTGCCCAAATCTTAAAAACCTCATATTGGACTTATC-TGTTTCAAC-GGAG 909 Query 1141 CGAGAGC-AAGTGGACT-TTACCAACGTGCCTCAATGTTTAATATCGACGCTGGAGTATG 1198 | ||||| || | || | ||||||| ||||||| ||| ||| | |||| ||||||| | Sbjct 910 CCAGAGCGAA-TCGA-TATTACCAATGTGCCTCGGTGTATAACAACGACTCTGGAGTGTA 967 Query 1199 TTGAGATTAA-AGAACCGA-ATG-A-G--A-AAAGTACGATTAAACTAGTGAACTACTTT 1251 |||||||||| | ||| || | | | | | ||| | |||||||||||| | || ||| Sbjct 968 TTGAGATTAACA-AACTGATAAGGAAGGGAGAAACTGGGATTAAACTAGTTCAGTATTTT 1026 Query 1252 CTTGAGAATTCAGCAGTCCTCAAGAAA 1278 ||||| |||||| || |||| |||||| Sbjct 1027 CTTGAAAATTCACCAATCCTTAAGAAA 1053 > Ahg494489 jgi|Araly1|494489|fgenesh2_kg.8__305__AT5G44950.1 Length=1324 Score = 250 bits (135), Expect = 2e-65 Identities = 655/891 (74%), Gaps = 96/891 (11%) Strand=Plus/Plus Query 454 AACATTTACAAGAGCAAGACATTGGTCTCTTTGAAGCTTCAT-AACGTAGAG-TTAAAGA 511 ||||||| |||||||||||| ||||| ||||| || | || | || |||| | || | | Sbjct 385 AACATTTTCAAGAGCAAGACGTTGGTGTCTTTAAAAC-TCGTAAATGTAGGGCTT-GACA 442 Query 512 ATTCAGACTTTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAAC-TGGAGAATATTTGT 570 || || | |||||||| ||| ||||||||||||||||| || | | || || | |||| | Sbjct 443 ATCCAAAGTTTGTTGTGTCTTTACCTTGTCTCAAGATCATGCATCTTGAAG-ACATTT-T 500 Query 571 CACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTTCTGTTCTTGAA 630 | || |||||||| |||||||||||||| ||||| | ||| ||||||||||| Sbjct 501 -----T---TATAGTCCTTTGATTGTGGAGAAGCTCCTCTCAAGCTGTCCTGTTCTTGAA 552 Query 631 GATCTTGAGCTGATTAGGCCTTTTGATATTAGGACACAT-AA-AGTTCTTCTGC-TTCTG 687 |||||| | | ||| | | | | | || ||| || | || ||| | ||||| Sbjct 553 GATCTT-A-C-CATT--G-----T-A-A-GA-AAC-CATGAAGATTTTTTCAACTTTCTG 597 Query 688 CGTGTGAGCTCTCAGACTCTGAAAAGCTTTACC--TT-ACATTTTGCGA-T-CTATAA-G 741 | |||||| ||||| ||| |||| | | || || || ||| ||| || | | || | Sbjct 598 CTTGTGAGGTCTCAAACTTTGAAGA-CCTT-CCGTTTAACA-TTT--GATTGGGA-AATG 651 Query 742 GATCGTACAGATTTTTCAGTTGAGATTGATGCTCCAAGACTCAAGTATATGA-CTGTTGA 800 | | ||||||||||||| || ||||||||||||||| |||| ||||| |||| || || | Sbjct 652 GGTAGTACAGATTTTTCGGTCGAGATTGATGCTCCAGGACTTAAGTACATGAGCT-TT-A 709 Query 801 -ACAGAGTCAATCTGATAGCATTGTGGTAAAGAACCTGAGTTCCTTGTTC-AGCATCGAC 858 | | |||||||||||||| || || |||||||| |||| |||||| || || || ||| Sbjct 710 GAGATAGTCAATCTGATAGAATCGTTGTAAAGAATTTGAGCTCCTTGGTCAAG-ATAGAC 768 Query 859 ATTGGTACTAAATTTAATC-C----TT----T--G-AGACATGAGG-ATCTAAGGA--TG 903 ||| |||| ||||||||| | || | | || | | || | | |||| || Sbjct 769 CTTGATACTGAATTTAATCTCAAGTTTGGCCTCGGCAGTCCTTTGGAACCGGAGGACTTG 828 Query 904 --C--G-TA-ATGTT-TTCTACGATTTT-TTAACCGGGATATCTAGTGTAAAACATATGA 955 | | | || || | | | |||||| || ||||| || || |||||||||||||||| Sbjct 829 ACCAAGAGAGATATTATCCGA-GATTTTCTT-ACCGGTATTTCAAGTGTAAAACATATGA 886 Query 956 TCATCTGTTTGTGGAGT-CTCCAGAGGT--TTTCTCCTTATTCAAAACCCGGACTGATTC 1012 |||||| | | ||| ||||| ||| || ||||| |||| ||||| | ||| Sbjct 887 TCATCT-CCCAT--CCTACTCTGGAGGTGCTTTATCGATATTCCAAACTCGGACCGCTTC 943 Query 1013 CCAAATTCCAGAACTTGTATCATTTAAAAGC-ACAGATGTGGAGCTCA-T-CAACACACT 1069 | |||||||| ||||| |||||||| || | | | | |||| | | || ||| Sbjct 944 CAAAATTCCATAACTTATATCATTTGCGGGCTGC-GTTCTCCAGCTTATTGTTAC-CAC- 1000 Query 1070 TATTGGAAG-CGTTTCTTGAGAGCTGCCCAAATCTGAAAAACCTCATCTTGGAATATAAT 1128 ||||| | | || ||||| | |||||||||||| ||||||||||||||||| ||| | Sbjct 1001 TATTGTCCGAC-TTCCTTGAAATCTGCCCAAATCTTAAAAACCTCATCTTGGACTATTCT 1059 Query 1129 GTTGAATTGGATCGAGAGCAAGTGGACTTTACCAACGTGCCTCAATGTTTAATATCGACG 1188 ||| | ||| | ||||||| | |||||||| || |||||||| |||||||||| |||| Sbjct 1060 GTTTCAGCGGAGCCAGAGCAAATCGACTTTACAAATGTGCCTCAGTGTTTAATATTGACG 1119 Query 1189 CTGGAGTATGTTGAGATTAAAGAACCGA--ATGA--GA--AAAGTACGATTAAACTAGTG 1242 |||| ||||||||||||||||||| | |||| || ||| | ||||||| | ||| Sbjct 1120 TTGGAATATGTTGAGATTAAAGAACTTACTATGAGGGAGGAAACTGGGATTAAATTGGTG 1179 Query 1243 AACTACTTTCTTGAGAATTCAGCAGTCCTCAAGAAACTTACTCTACGTTTC 1293 ||||||||||||||||||||||||||||| |||||||| |||||| ||||| Sbjct 1180 AACTACTTTCTTGAGAATTCAGCAGTCCTAAAGAAACTGACTCTAAGTTTC 1230 > Ahg915673 jgi|Araly1|915673|Al_scaffold_0008_424 Length=579 Score = 230 bits (124), Expect = 3e-59 Identities = 343/442 (78%), Gaps = 41/442 (9%) Strand=Plus/Plus Query 454 AACAT-TTACAAGAGCAAGACATTGGTCTCTTTGAA-GCTT-CATAACGTAGAG-TTAAA 509 ||||| || | |||||||||||||||| ||| | || |||| || || |||||| || || Sbjct 10 AACATGTTTC-AGAGCAAGACATTGGTGTCTAT-AAGGCTTGCA-AATGTAGAGCTTGAA 66 Query 510 GAATTCAGACT-TTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTGGAGAATATTT 568 ||| ||| | ||||||||||||||||||||||||||||| || | || || || |||| Sbjct 67 -AATAAAGA-TATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGATAACATTT 124 Query 569 GTCACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTTCTGTTCTTG 628 || |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| Sbjct 125 GTTACGGTGAGGATGGTCCTTTGATTGTGGAGAAGCTCATCTCTGGATGTCCTGTTCTTG 184 Query 629 AAGATCTTGAGC-T-GATTAGGCCTTTTGATATTAGGA-CACATAAAGTTCTTCT-GCTT 684 |||||||| | | | | | ||| ||| ||| |||| | | ||| | | | | || Sbjct 185 AAGATCTT-ACCGTCG-TAAGGA-TTTAC-TATGAGGATCT-AGAAACTA-TGCCAGTTT 238 Query 685 CTGCGTGTGAGCTCTCAGACTCTGAAAAG-CTTTACC-TTACAT-TTTGCGATCTATAAG 741 ||||||||| |||||||||||||| | ||| || ||| || ||| || || Sbjct 239 -TGCGTGTGAAATCTCAGACTCTGAAG-GTCTT--CCATTATATGTTTAA-ATGGGGAAT 293 Query 742 GA-T-CGTACAGATTTTTCAGTTGAGATTGATGCTCCAAGA-CTCAAGTATATGACTGTT 798 | | | |||| ||||||| ||||||||||||||||| || || ||||| |||| ||| Sbjct 294 GCCTAC-TACATATTTTTCGGTTGAGATTGATGCTCCG-GAACTTAAGTACATGAG-GTT 350 Query 799 GA-ACAGAGTCAATCTGATAGCAT-TGTGGTAAAGAACCTGAGTTCCTTGTTCA-GCATC 855 | | | ||||||||||||| || | |||| |||||||||||||||||||||| | || Sbjct 351 TAGAGATAGTCAATCTGATAAAATCT-TGGTTAAGAACCTGAGTTCCTTGTTCAAG-ATA 408 Query 856 GA-CATTGGTACTAAATTTAAT 876 || | ||| ||| |||||||| Sbjct 409 GATC-TTGACACTGAATTTAAT 429 > Ahg915675 jgi|Araly1|915675|Al_scaffold_0008_426 Length=429 Score = 189 bits (102), Expect = 5e-47 Identities = 162/189 (86%), Gaps = 12/189 (6%) Strand=Plus/Plus Query 454 AACAT-TTACAAGAGCAAGACATTGGTCTCTTTGAA-GCTT-CATAACGTAGAG-TTAAA 509 ||||| || | ||||||| |||||||| ||||| || |||| || || |||||| || || Sbjct 166 AACATGTT-CCAGAGCAAAACATTGGTGTCTTT-AAGGCTTGCA-AATGTAGAGCTTGAA 222 Query 510 GAATTC-AGACT-TTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAACTGGAGAATATT 567 || || ||| | ||||||||||||||||||||||||||||| || | || || || ||| Sbjct 223 -AA-TCAAGA-TATTGTTGTTTCTCTACCTTGTCTCAAGATCATGCATCTAGATAACATT 279 Query 568 TGTCACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTTCTGTTCTT 627 ||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| Sbjct 280 TGTTACGGTGAGGATGGTCCTTTGATTGCGGAGAAGCTCATCTCTGGATGTTCTGTTCTT 339 Query 628 GAAGATCTT 636 ||||||||| Sbjct 340 GAAGATCTT 348 > Ahg481654 jgi|Araly1|481654|fgenesh2_kg.4__714__AT2G27505.1 Length=993 Score = 147 bits (79), Expect = 3e-34 Identities = 192/244 (79%), Gaps = 18/244 (7%) Strand=Plus/Plus Query 1143 AGAGCAAGTGGACTTTACCAACGTGCCTCAATGT-TTAATATCGACGCTGGAGTATGTTG 1201 |||| || ||||| |||| || ||||||| ||| | || ||||||||||| ||||||| Sbjct 741 AGAGGAAATGGACCTTACTAATGTGCCTCGGTGTATGAA-ATCGACGCTGGTGTATGTTA 799 Query 1202 AGAT---TAAA--GA-ACCGAATGAGAAAAGTACGATTAAACTAGTGAACTACTTTCTTG 1255 |||| ||| || | |||| ||| ||| | ||||||||||||||| |||||||||| Sbjct 800 AGATCAACAAACTGATAACGAAGGAGGAAACTGGGATTAAACTAGTGAATTACTTTCTTG 859 Query 1256 AGAATTCAGCAGTCCTCAAGAAACTTACTCTACGTTTCTCATATTCATCT-TCTA--T-C 1311 ||||||||||||||||||||||||| ||| | |||| || |||| ||| | | | | Sbjct 860 AGAATTCAGCAGTCCTCAAGAAACTGACTATGTTTTTCACACATTCTTCTATGGAGATTC 919 Query 1312 TA---CCTAAAGAGCTACAAGAAGCTTCTTACATCAACAAAGCTTTCTCCCA-CATGTCA 1367 | || | ||||||||| ||||||||||||||| || |||||||||| || | ||||| Sbjct 920 AAGAGCC-AGAGAGCTACATGAAGCTTCTTACATCCACGAAGCTTTCTCGCAAC-TGTCA 977 Query 1368 AGTT 1371 |||| Sbjct 978 AGTT 981 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59649323670 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5