BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G44990.1
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915669 jgi|Araly1|915669|Al_scaffold_0008_420 1504 0.0
Ahg329576 jgi|Araly1|329576|fgenesh1_pm.C_scaffold_7001803 556 9e-158
> Ahg915669 jgi|Araly1|915669|Al_scaffold_0008_420
Length=1059
Score = 1504 bits (814), Expect = 0.0
Identities = 950/1017 (93%), Gaps = 4/1017 (0%)
Strand=Plus/Plus
Query 70 TACACCAATGGAAAACGA-AAATCCGAATTTTGCTAGAACCGCAACATCGTTCCGAAACT 128
|||| |||||| |||||| || | || |||| |||||||||||||||| ||||| ||||
Sbjct 12 TACATCAATGGCAAACGAGAAGT-CGGATTTCACTAGAACCGCAACATCATTCCGCAACT 70
Query 129 TTGTTTCA-AAAGATCCTGACTCTCAGTTTCCAGCAGAATCAGGAAGATACCATCTTTAT 187
|||||||| ||| | | ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 71 TTGTTTCACAAA-AACTTGATTCTCAGTTTCCAGCAGAATCAGCAAGATACCATCTTTAT 129
Query 188 ATCTCTTATGCTTGTCCATGGGCTTCTAGATGTCTTGCAATCTTGAAACTCAAAGGACTT 247
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 ATCTCTTACGCTTGTCCATGGGCTTCTAGATGTCTTGCAATCTTGAAACTCAAAGGACTT 189
Query 248 GACAAAGCTATAAGCTTTTCGTCTGTTCAACCACTTTGGAGAAATACCAAAGAAAACGAC 307
|||||||| |||||||||||||||||||||||||||| | ||| |||||||||| ||||
Sbjct 190 GACAAAGCAATAAGCTTTTCGTCTGTTCAACCACTTTTTAAAAAAACCAAAGAAAGCGAC 249
Query 308 GAGCATATGGGATGGGTTTTTCCAGATTCAGATACAGAGGTTCTTGGAGCTGAACGTGAT 367
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GAGCATATGGGATGGATTTTTCCAGATTCAGATACAGAGGTTCTTGGAGCTGAACGTGAT 309
Query 368 CATATCAATGGTGCGAAAAGCGTAAGAGAACTTTATGATATCGCTAGCTCCAACTACACG 427
||| | |||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 310 CATGTTAATGGTGCGAAATCCGTAAGAGAACTATATGATATCGCTAGCTCCAACTACACG 369
Query 428 GGCAAATATACGGTTCCTGTTCTTTGGGATAAGAAGCTTAAGACTATAGTTAACAATGAG 487
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GGAAAATACACTGTTCCTGTTCTTTGGGATAAGAAGCTTAAGACTATAGTTAACAATGAG 429
Query 488 AGCTCTGAGATACTCCGAATGTTCAACACCGAGTTCAATCATGTTGCAGAAAACCCTTCT 547
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 430 AGTTCTGAGATACTCCGAATGTTCAATACCGAGTTCAATCATGTTGCAGAAAATCCTTCT 489
Query 548 CTCGATCTTTATCCACCCAACCTCCGAGCCATAATCGATGAGACTAACGAATGGATTCAC 607
||||||||||| || ||| | ||||||||||||||||||||||| ||||||||||| |||
Sbjct 490 CTCGATCTTTACCCTCCCTATCTCCGAGCCATAATCGATGAGACCAACGAATGGATCCAC 549
Query 608 GATGGGATAAACAACGGTGTTTATAAATGTGGGTTTGCTACAAATCAAGAAACTTATGAT 667
|||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 550 GATGAGATAAATAACGGTGTTTATAAATGTGGGTTTGCTAAAAATCAAGAAACCTATGAT 609
Query 668 GTGGAAGTGAAACGATTGTATGAAGCATTGGACCGATGCGAAGACATACTCAGAAAACAA 727
|||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 610 GTGGCAGTGAAACAATTGTATGATGCATTGGACCGATGCGAAGAAATACTCAGAAACCAA 669
Query 728 CGGTTTCTTTGTGGAAACACTCTGACTGAATCAGATATCCGATTATTCGTCACTGTCATA 787
||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||||
Sbjct 670 CGGTTTCTTTGTGGAAACATTTTGACTGAACCAGATATCCGATTATTCGTCACTCTCATA 729
Query 788 AGATTTGACGAGGCTTACGCGGTGATCTTCAAATGCGATAAAAGACTCGTAAGAGAGTAT 847
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 730 AGATTTGACGAGGCTTACGCGGTGATCTTCAAATGCGATAAAAGACTCGTAAGAGATTAT 789
Query 848 TATCATCTCTTTAACTACACGAAAGATATCTACCAGATCGCGGGAATGAGCAGTACAGTA 907
||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 790 TATAATCTCTTTAACTACACGAAAGATATCTACCAAATCGCGGGACTGAGCAGTACAGTA 849
Query 908 AAGATGGATCATATCAAGCAAAACTACTATGGAAGCTTTCCTTCTATAAACCCTCTTGAG 967
|||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 850 AAGATGGATCATATAAAGCAAAATTACTATGGAAGCTTTCCTTCTTTAAACCCTCTTGAG 909
Query 968 ATCATCGCTCATGGACCAAACATTGATTACTCTTTGCCTCATGATCGACACAGATTCTCT 1027
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ATCATCGCTCCTGGACCAAACATTGATTACTCTTTGCCTCATGATCGACACAGATTCTCT 969
Query 1028 TTAGAAAGTGACTATACCAGACTTGAGTTATTTGAGAGTGCAAGTTTTGTTTGTGAA 1084
| |||||||||| || | |||||||||||| ||||||||||||||||||||||||||
Sbjct 970 TCAGAAAGTGACGATGCAAGACTTGAGTTACTTGAGAGTGCAAGTTTTGTTTGTGAA 1026
> Ahg329576 jgi|Araly1|329576|fgenesh1_pm.C_scaffold_7001803
Length=1158
Score = 556 bits (301), Expect = 9e-158
Identities = 578/710 (81%), Gaps = 26/710 (4%)
Strand=Plus/Plus
Query 104 AGAACCGCAACATCGTTCCGAAACTTTGTTTCAAAAGATCCTGACTCTCAGTTTCCAGCA 163
||||| ||| || | || |||||||||||||||| |||| | | ||||| ||||||||
Sbjct 142 AGAACTGCATCAACATTTCGAAACTTTGTTTCAAGAGATTCAAATTCTCAATTTCCAGCT 201
Query 164 GAATCAGGAAGATACCATCTTTATATCTCTTATGCTTGTCCATGGGCTTCTAGATGTCTT 223
||||| || |||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 202 GAATCTGGTAGATACCATCTTTACATATCGTATGCTTGTCCATGGGCTTCTAGATGTCTT 261
Query 224 GCA-ATCTTGAA-ACTCAAAGGACTTGACAAAGCTATAAGCTTTTCGTCTGTTCAACC-A 280
|| | |||||| | |||||||||||||| | || |||||||| |||||||| |||| |
Sbjct 262 TCATA-CTTGAAGA-TCAAAGGACTTGACGATGCAATAAGCTTCTCGTCTGTAAAACCCA 319
Query 281 CTTTGGAGAA-ATACCAAAGAAAACGACGAGCATATGGGATGGGTTTTTCC-AGATTCAG 338
||||| ||| | || ||||||| ||| ||||||||||||||||| ||||| || |||||
Sbjct 320 -TTTGGGGAAGA-ACTAAAGAAACCGATGAGCATATGGGATGGGTCTTTCCGAG-TTCAG 376
Query 339 ATACAGAGGTTCTTGGAGCTGAACGTGATCATATCAATGGTGCGAAAAGCGTAAGAGAAC 398
|||| ||||||| |||||||| | ||||||| | |||||||| || || ||||||||||
Sbjct 377 ATACCGAGGTTCAAGGAGCTGATCCTGATCATCTTAATGGTGCTAAGAGTGTAAGAGAAC 436
Query 399 TTTATGATATCGCTAGCTCCAA-CTACAC-GGGCAAATATACGGTTCCTGTTCTTTGGGA 456
| ||||| || |||||| |||| |||||| ||| || ||||| ||||||||||| |||||
Sbjct 437 TCTATGAGATTGCTAGC-CCAAACTACACTGGG-AAGTATACTGTTCCTGTTCTGTGGGA 494
Query 457 TAAGAAGCTTAAGACTATAGTTAACAATGAGAGCT-CTGAGATACTCCGAATGTTCAACA 515
||||||||| || ||| | |||||||| ||||| | | || ||| |||| ||||||||||
Sbjct 495 TAAGAAGCTCAAAACTGTTGTTAACAACGAGAG-TGCAGAAATAATCCGGATGTTCAACA 553
Query 516 CCGAGTTCAATCATGTTGCAGAAAACCCTTCTCTCGATCTTTATCCACC-CAACCTCCGA 574
| |||||||||||| |||| | ||| ||| |||||| ||||| || | || | ||| |
Sbjct 554 CTGAGTTCAATCATATTGCGGGAAATCCTGATCTCGACCTTTACCCTTCTCATC-TCCAA 612
Query 575 GCCATAATCGATGAGACTAACGAATGGAT-TCACGATGGGATAAACAACGGTGTTTATAA 633
|| | ||||||||| ||||| |||||||| | || |||||||||| |||||||| ||||
Sbjct 613 GCTAAAATCGATGAAACTAATGAATGGATCT-ACAATGGGATAAATAACGGTGTCTATAG 671
Query 634 ATGTGGGTTTGCTAC-AAATCAAGAAACTTATGATGTGGAAGT-GAAACGATTGTATGAA 691
||| |||||||| | ||| |||| | ||||||| | || ||| || | | ||||||||
Sbjct 672 ATGCGGGTTTGCAAAGAAA-CAAGGACCTTATGAGGAGGCAGTTGAG-CAAGTGTATGAA 729
Query 692 GCATTGGACCGATGCGAAGACATACTCAGAAAACAACGGTTTCTT-TGTGGAAACACTCT 750
||||| || ||||||| || || || ||||||| |||| | | ||||| |||||| |
Sbjct 730 GCATTAGATAGATGCGAGGAGATTCTTGGAAAACATCGGTA-CATCTGTGGTAACACTTT 788
Query 751 GACTGAATCAGATATCCGATTATTCGTCACTGTCATAAGATTTGACGAGG 800
||||||| |||||||| |||| || ||||| | ||||||||||||||||
Sbjct 789 GACTGAAACAGATATCAGATTGTTTGTCACCCTTATAAGATTTGACGAGG 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41630225364
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5