BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45010.1 Length=582 Score E Sequences producing significant alignments: (Bits) Value Ahg494484 jgi|Araly1|494484|fgenesh2_kg.8__300__AT1G64750.1 444 4e-124 Ahg475473 jgi|Araly1|475473|fgenesh2_kg.2__603__AT1G64750.2 412 1e-114 > Ahg494484 jgi|Araly1|494484|fgenesh2_kg.8__300__AT1G64750.1 Length=443 Score = 444 bits (240), Expect = 4e-124 Identities = 375/434 (86%), Gaps = 33/434 (8%) Strand=Plus/Plus Query 115 ttttCTCGATCTGGTTGATTTGC-TTAAACATCTGTAACTATGGCGGCAGAACCCAAGGC 173 |||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| Sbjct 4 TTTTCTCGATCTGGTTGA-TTGCTTTAACCATCTGTAACTATGGCGGCAGAACCCAAGGC 62 Query 174 AGCTGTCGAAGTGGTGAAGGTGGATCTATTCGAGGACGACGATGAGTTCGAGGAATTTGA 233 || || ||||| || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 63 GGCGGTTGAAGTAGTAAAGGTGGATCTGTTCGAGGACGACGATGAGTTCGAGGAATTTGA 122 Query 234 AATCAACGAAGATTGGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCTGCAGTGGGAAGA 293 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 123 AATCAACGAAGATTCGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCAGCAGTGGGAAGA 182 Query 294 TGACTGGGATGATGATGATGTCAGTGACGACTTCTCGCGTCAGTTAAAGAAGGAGCTTGA 353 ||||||||||||||||||||| | |||||||||||| |||||||||| |||||||||||| Sbjct 183 TGACTGGGATGATGATGATGTTAATGACGACTTCTCCCGTCAGTTAAGGAAGGAGCTTGA 242 Query 354 GAATGCTAGTGAGAAGAAATGAGGTCCAAGATTGCGAGAAAGGCAGGTCTTCTCATTTAG 413 ||||| |||||||||||||||||||||||||||| || || ||| ||||||| ||||||| Sbjct 243 GAATGGTAGTGAGAAGAAATGAGGTCCAAGATTGTGA-AA-GGCTGGTCTTCACATTTAG 300 Query 414 GGAACCTTGGCTTTTTTGTTTGAATTGCATCCTTTGGTTTATCGTAGCATGTATCGGTTC 473 | ||| | |||| |||| | | | | | ||||| |||||||||| Sbjct 301 G-AACATC--CTTTG--GTTT-A-T-G--------G------C-TAGCACGTATCGGTTC 337 Query 474 TCCTTTTCCTTTACACATTATACTCTTCCTTGGATGCAAATTTCT-CGTCTTTGAAGATG 532 |||||||||||| |||||| ||||||| ||||||| ||| || | |||||||||||| Sbjct 338 TCCTTTTCCTTTGCACATTTTACTCTT----GGATGCAGATTCCTTC-TCTTTGAAGATG 392 Query 533 ATAAATTTGAGCTG 546 |||||||||| ||| Sbjct 393 ATAAATTTGAACTG 406 > Ahg475473 jgi|Araly1|475473|fgenesh2_kg.2__603__AT1G64750.2 Length=524 Score = 412 bits (223), Expect = 1e-114 Identities = 407/489 (83%), Gaps = 40/489 (8%) Strand=Plus/Plus Query 71 ACTTGGAGGAATTAATCGAG-TTTGGTGATCTTCTTCTTAGGtttttttCTCGATCTGGT 129 ||||||| |||| |||||| ||| || ||||||||||||| ||||||||||||||| Sbjct 48 ACTTGGA-AAATTGATCGAGTTTTCGTCTTCTTCTTCTTAGG---TTTTCTCGATCTGGT 103 Query 130 TGATTTGCTTAAACATCTGTAA-CTATGGCGGCAGAACCCAAGGC--AG-CTGTC-GAAG 184 || | || | || ||| |||||||| ||||||| ||||| | ||| | |||| Sbjct 104 TG----G-TT---C--CTTTAACCTATGGCGACAGAACCGAAGGCGGCGACTG-CTGAAG 152 Query 185 TGGTGAAGGTGGATCTATTCGAGGACGACGATGAGTTCGAGGAATTTGAAATCAACGAAG 244 |||| ||| ||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 153 TGGTAAAGATGGATCTGTTTGAGGACGACGATGAGTTCGAGGAATTTGAAATCAACGAAG 212 Query 245 ATTGGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCTGCAGTGGGAAGATGACTGGGATG 304 |||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| Sbjct 213 ATTGGTTGGAGAAAGAAGAAGTCAAGGAAGTTAGCCAGCAGTGGGAAGATGATTGGGATG 272 Query 305 ATGATGATGTCAGTGACGACTTCTCGCGTCAGTTAAAGAAGGAGCTTGAGAATGCTAGTG 364 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || || Sbjct 273 ATGATGATGTCAATGACGACTTCTCGCGTCAGTTAAGGAAGGAGCTTGAGAATGGTATTG 332 Query 365 AGAAGAAATGAGGTCCAAGATTGCGAGAAAGGCAGGTCTTCTCATTTAGGGAACCTTGGC 424 ||||||||||||||| |||||| || |||| ||||| ||| |||| ||| || ||||| Sbjct 333 AGAAGAAATGAGGTCGAAGATTATGA-AAAG-CAGGTTTTCACATTCAGGAAATCTTGG- 389 Query 425 TTTT-TTGTTTGAAT-TGCATCCTTTGGTTTATCGTAGCAT-GTATCGGTTCTCCTTTTC 481 |||| |||| ||| | || | | |||| ||| | | || | ||| || | ||||| Sbjct 390 TTTTCTTGTATGA-TCTGGAAC-TTTG-TTT---G-A--ATTGCATCCTTTGT--TTTTC 438 Query 482 CTTTACACATTATACTCTTCCTTGGATGCAAATTTC-TCGTCTTTGAAGATGATAAATTT 540 ||| |||||| |||||||||||||||||| ||| | | ||||||||||||||||||||| Sbjct 439 -TTTGCACATTTTACTCTTCCTTGGATGCAGATTCCCTTGTCTTTGAAGATGATAAATTT 497 Query 541 GAGCTGATA 549 || |||||| Sbjct 498 GAACTGATA 506 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21290818662 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5