BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45040.1
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948568 jgi|Araly1|948568|scaffold_800455.1 780 0.0
Ahg330891 jgi|Araly1|330891|fgenesh1_pm.C_scaffold_8000234 767 0.0
> Ahg948568 jgi|Araly1|948568|scaffold_800455.1
Length=574
Score = 780 bits (422), Expect = 0.0
Identities = 505/544 (93%), Gaps = 9/544 (2%)
Strand=Plus/Plus
Query 35 GAGATGAGACTTGTTCTCTCTGGTGCCTCTTCTTTCACCTCCAACCTTTTTTGTTCCTCC 94
|||||||| ||| |||||||| |||| ||| || ||||||||| |||||||||||||||
Sbjct 19 GAGATGAGTCTTCTTCTCTCTTGTGCTTCTGCTCGCACCTCCAATCTTTTTTGTTCCTCC 78
Query 95 CAACAGGTCAATGGAAGAGGAAA-AGAACTGAAAAACCCAATTTC-TCTAAACCACAACA 152
||| |||||||||||||| |||| |||| || || |||||| ||| || ||| |||||||
Sbjct 79 CAAAAGGTCAATGGAAGA-GAAAGAGAATTGCAATACCCAA-TTCTTCCAAATCACAACA 136
Query 153 AAGATTTGGACTTTCTGTTAAAGAAGTTAGCTCCGCCACTCACGGCGGTTTTACTTGCTG 212
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 137 AAGATTTGAACTTTCTGATAAAGAAGTTAGCTCCGCCACTCACGGCGGTTCTACTTGCTG 196
Query 213 TTTCA-CC--CATCTGTTTCCCTCCAGAATCTCTTGGGCAGACTTTGGATATACAGAGAG 269
||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 197 TTTCACCCATCATCTGTTTCCCTCCAGAATCTCTAGGGCAGACTTTGGATATACAGAGAG 256
Query 270 GAGCTACATTGTTTAATAGAGCTTGTATCGGGTGTCATGATACAGGTGGAAACATTATTC 329
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 257 GAGCAACATTGTTTAATAGAGCTTGTATCGGGTGTCACGATACAGGTGGAAACATTATTC 316
Query 330 AACCTGGT-GCAACGCTTTTCACAAAAGACCTCGAAAGAAATGGAGTTGATACTGAGGAA 388
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 317 AACC-GGTCGCAACGCTTTTCACAAAAGACCTCGAAAGAAATGGAGTTGATACCGAGGAA 375
Query 389 GAAATATATCGTGTTACCTACTTTGGAAAGGGAAGAATGCCGGGATTTGGTGAGAAATGC 448
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 376 GAGATATATCGTGTTACCTACTTTGGAAAGGGAAGAATGCCGGGATTTGGAGAGAAATGC 435
Query 449 ACACCGAGAGGACAATGTACCTTTGGACCGCGGTTGCAGGACGAAGAAATCAAGCTTCTC 508
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 436 ACACCGAGAGGACAATGTACCTTTGGACCGCGGTTGCAAGACGAAGAAATCAAGCTTCTG 495
Query 509 GCTGAATTTGTAAAGTTTCAAGCTGACCAAGGCTGGCCAACTGTATCTACGGACTAGCGA 568
||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||
Sbjct 496 GCTGAATTTGTAAAGTTTCAAGCTGACAAAGGTTGGCCAAATGTATCTACCGACTAGCGA 555
Query 569 CTAG 572
|||
Sbjct 556 GTAG 559
> Ahg330891 jgi|Araly1|330891|fgenesh1_pm.C_scaffold_8000234
Length=531
Score = 767 bits (415), Expect = 0.0
Identities = 495/533 (93%), Gaps = 7/533 (1%)
Strand=Plus/Plus
Query 38 ATGAGACTTGTTCTCTCTGGTGCCTCTTCTTTCACCTCCAACCTTTTTTGTTCCTCCCAA 97
||||| ||| |||||||| |||||||| || ||||||||| ||||||||||||||||||
Sbjct 1 ATGAGTCTTCTTCTCTCTTGTGCCTCTGCTCGCACCTCCAATCTTTTTTGTTCCTCCCAA 60
Query 98 CAGGTCAATGGAAGAGGAAA-AGAACTGAAAAACCCAATTTC-TCTAAACCACAACAAAG 155
|||||||||||||| |||| |||| || || |||||| ||| || ||| ||||||||||
Sbjct 61 AAGGTCAATGGAAGA-GAAAGAGAATTGCAATACCCAA-TTCTTCCAAATCACAACAAAG 118
Query 156 ATTTGGACTTTCTGTTAAAGAAGTTAGCTCCGCCACTCACGGCGGTTTTACTTGCTGTTT 215
||||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 119 ATTTGAACTTTCTGATAAAGAAGTTAGCTCAGCCACTCACGGCGGTTCTACTTGCTGTTT 178
Query 216 CA-CC--CATCTGTTTCCCTCCAGAATCTCTTGGGCAGACTTTGGATATACAGAGAGGAG 272
|| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 CACCCATCATCTGTTTCCCTCCAGAATCTCTAGGGCAGACTTTGGATATACAGAGAGGAG 238
Query 273 CTACATTGTTTAATAGAGCTTGTATCGGGTGTCATGATACAGGTGGAAACATTATTCAAC 332
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 CAACATTGTTTAATAGAGCTTGTATCGGGTGTCATGATACAGGTGGAAATATTATTCAAC 298
Query 333 CTGGTGCAACGCTTTTCACAAAAGACCTCGAAAGAAATGGAGTTGATACTGAGGAAGAAA 392
| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 299 CGGGCGCAACGCTTTTCACAAAAGACCTCGAAAGAAATGGAGTTGATACCGAGGAAGAGA 358
Query 393 TATATCGTGTTACCTACTTTGGAAAGGGAAGAATGCCGGGATTTGGTGAGAAATGCACAC 452
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 TATATCGTGTTACCTACTTTGGAAAGGGAAGAATGCCGGGATTTGGAGAGAAATGCACAC 418
Query 453 CGAGAGGACAATGTACCTTTGGACCGCGGTTGCAGGACGAAGAAATCAAGCTTCTCGCTG 512
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 419 CGAGAGGACAATGTACCTTTGGACCGCGGTTGCAAGACGAAGAAATCAAGCTTCTGGCTG 478
Query 513 AATTTGTAAAGTTTCAAGCTGACCAAGGCTGGCCAACTGTATCTACGGACTAG 565
||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||
Sbjct 479 AATTTGTAAAGTTTCAAGCTGACAAAGGTTGGCCAAATGTATCTACCGACTAG 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28020343995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5