BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45190.2
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494461 jgi|Araly1|494461|fgenesh2_kg.8__277__AT5G45190.1 2625 0.0
Ahg492906 jgi|Araly1|492906|fgenesh2_kg.7__2339__AT4G19600.1 830 0.0
Ahg356527 jgi|Araly1|356527|fgenesh1_pg.C_scaffold_8000314 207 2e-52
> Ahg494461 jgi|Araly1|494461|fgenesh2_kg.8__277__AT5G45190.1
Length=2090
Score = 2625 bits (1421), Expect = 0.0
Identities = 1617/1708 (95%), Gaps = 28/1708 (2%)
Strand=Plus/Plus
Query 457 GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCA 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCA 456
Query 517 AAGAATGACAGAAGGACCATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTGAGGAA 576
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AAGAATGACAGAAGGACTATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTGAGGAA 516
Query 577 ACTCCACGGCCCTTGAAAGATGTTATTTTTGTCTCCTATGAGATTATAAACAAGAAGGAT 636
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 517 ACTCCACGGCCCTTGAAAGACGTTATTTTTGTCTCCTATGAGATAATAAACAAGAAGGAT 576
Query 637 CCTGGTGCTTCCCAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATA 696
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CCTGGTGCTTCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATA 636
Query 697 TTAAACGGAGAAAAAATTGTTCTTTCCACTCTAGGCTTTGACCTCAATGTTTATCATCCT 756
|||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 637 TTAAACGGAGAAAAAATTGTTCTTTCTACTTTAGGCTTTGACCTCAATGTTCATCATCCT 696
Query 757 TATAAACCCCTGGTAGAAGCAATAAAGAAATTTAAGGTTGCACAGAATGCACTTGCCCAA 816
||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 697 TATAAACCCCTTGTAGAAGCTATAAAGAAATTTAAGGTTGCACAGAATGCTCTCGCCCAA 756
Query 817 GTTGCATGGAATTTTGTTAATGATGGTCTACGGACATCTCTCTGCCTGCAATTTAAGCCT 876
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 757 GTTGCATGGAATTTTGTTAATGATGGTCTTCGGACATCTCTCTGCCTGCAATTTAAGCCT 816
Query 877 CATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAGTTACCA 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 CATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAGTTACCA 876
Query 937 TCAGATGGAGAGAAGGTTTGGTGGCAAGAATTTGATGTCACACCCAGACAACTGGAGGAT 996
|||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct 877 TCAGATGGGGAGAAGGTTTGGTGGCAAGAATTTGACGTCACACCCCGACAATTGGAGGAT 936
Query 997 GTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAATCGTGTCCCTGCATCTCAAGGAAGT 1056
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 937 GTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAACCGTGTCCCTGCATCTCAAGGAAGC 996
Query 1057 GAAGTCGAGAGTAGTGTAGGTGGAGGGTCAGCTCAGCGACCAGGCTCCAGAAATGCGGTT 1116
|||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||
Sbjct 997 GAAGTCGAAAGTAGTGTAGGTGGAGGGTCAGTTCAGCGGCCAGGCTCCAGAAATGCAGTT 1056
Query 1117 TCAACCGATGAGCATGTTGGTTCTAGGCAAACGTCATCAGTACGTTCAACCCATGAACAA 1176
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1057 TCAACCGATGAGCATGTTGGTTCTAGGCAAAC---ATCAGTACGTTCAACCCATGAA-AA 1112
Query 1177 T-CAAATTCTGATAATCATGGGGGTTCATCCAAAGGAGTATTGAATCAGAACAATGAGAA 1235
| ||||||||||||||||| | |||| |||||||||||||||||||||||||| ||
Sbjct 1113 TTCAAATTCTGATAATCAT-----T-CATCGAAAGGAGTATTGAATCAGAACAATGAAAA 1166
Query 1236 TGGGGGTGGTGAGGCAGCTAATGTCAGTGTCGATAACAAAGAGGAGATAGAGAGAGAAAC 1295
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1167 TGGGGCTGGTGAGGCAGCTAATGTCAGTGTCGATCACAAAGAGGAGATAGAGAGAGAAAC 1226
Query 1296 AAAAGAAAGCAGCCTACATCTTGAAAGCCATCCAGCCCATAAGGACAATGTGAGAGAAGC 1355
|||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||||||
Sbjct 1227 AAAAGAAAGCAGCCTACATCCTGAAAGTCATCCACCCCATAAGGACAATGTAAGAGAAGC 1286
Query 1356 CCCCCATAACTCTAGACCTTTAGTTGAGGGACCTGGGAAAGACAACTCAGAAAGAGAGGG 1415
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1287 CCCCCATAACTCTAGACCTTTAGTTGAGGGACCTGCGAAAGACAACTCAGAAAGAGAGGG 1346
Query 1416 TGGAGAGCTACAAGATGATGGTGCTGTTCATAAATCTCGAAATGTTGATGTGGGTGATGC 1475
||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1347 TGGAGAGATTCAAGATGATGGTGCTGTTCATAAATCTAGAAATGTTGATGTGGGTGATGC 1406
Query 1476 CCTAATCAGCCAATCGCCAAAAGATTTGAAATTGCTTCGAGATAAGGTGAAGGCTAAACG 1535
|| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1407 CCCAATCAGCCAATCGCCAAAAGACTTAAAATTGCTTCGAGATAAGGTGAAGGCTAAACG 1466
Query 1536 AGAGAAAGCTAAGAAGTTGCTAGGTGAAAGAACGAGGAAAAAGGATTTGATGGATGAGGA 1595
|||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1467 AGAGAAAGCTAAAAAGTTACTAGGTGAAAGGACGAGGAAAAAGGATTTGATGGATGAGGA 1526
Query 1596 TGATTTGATTGAAAGAGAACTGGAAGATGTGCAACTAGCTGTTGAGGATGAAAAGACGAA 1655
||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||
Sbjct 1527 TGATTTGATTGAAAGAGAATTGGAGGATGTGGAACTAGCAGTTGAGGATGAAAAGACGAA 1586
Query 1656 GGAAAGGAAAGTACAGAGCAGGCCAAAGGCGGAGAACTCTGATCTCATGGGTACAGAACA 1715
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1587 GGAAAGGAAAGTAGAGAGCAGGCCAAAAGCCGAGAACTCTGATCTCATGGGTACAGAACA 1646
Query 1716 TGGTGAGATTTTAGATGTTAAAGGAGAAGTCAAAAATACAGAGGAAGGTGAAATGGTAAA 1775
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1647 TGGTGAGATTCTAGATGTTAAAGGAGAAGTCAAAAATACAGAGGAAGGCGAAATGGTAAA 1706
Query 1776 CAACAATGTGTCCCCGATGATGCATAGCAGAAAGAGAAAAATGGGAAGCCCTCCTGAAAA 1835
| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 CGA---TGTGTCCCCAATGATGCATAGCAGAAAGAGAAAAATGGGAAGCCCTCCTGAAAA 1763
Query 1836 GCAGTCAGAAGGAAAGAGACGCCACAATAGTGAGAATGGGGAAGAAAGCCAT-A-AG-A- 1891
||||||||||||||||||||||||||||||||||||||| |||||| |||| | | |
Sbjct 1764 GCAGTCAGAAGGAAAGAGACGCCACAATAGTGAGAATGGTGAAGAAGGCCACCACAACAA 1823
Query 1892 --CGAGCAGAGGTAGTAGCCATCATGGTGATAGAGAGCACAGAAGACACTCACAAGAGAA 1949
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 AACGAGCAGAGGTAGTAGTCATCATGGTGATAGAGAGCACAGAAGACACTCACAAGAGAA 1883
Query 1950 TAACCATTCATAAGA-GAGGTAATGATTATTAAAACTGCTACTCTTTGTATTCCATCTAA 2008
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1884 TAACCATTCATAAGAAGAGGTAATGATTATTAAAACTGCTACTCTTTATATTCCATCTTA 1943
Query 2009 ATGGTCTTTTTAA-AA-GACCTTTGGCACTTCGATGCCC-AACCATGTGAACTTGACTTC 2065
|||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1944 -TGGTCTTTTTAATAAAGACCTTTGGCACTTTGATGCCCCAACCATGTGAACTTGACTTC 2002
Query 2066 TACATGGGTCGGTTCAGTCGTTGGAACCA-TGCTCTCTGTATTTTATGTTGATTATATAT 2124
| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2003 TGCATGGGTCGGTTCAGTCGTTGGAACCAATGCTCAGTGTATTTTATGTTGATTATATAT 2062
Query 2125 CT--ATTCGTGGCATTTTTGCACAATCC 2150
|| ||| ||||||||||||||||||||
Sbjct 2063 CTCTATTTGTGGCATTTTTGCACAATCC 2090
Score = 586 bits (317), Expect = 2e-166
Identities = 345/359 (96%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 56 TTCTCGCGACTCTCTAGGGTTAGGGTTTGTTGATTTTCACGCGTTATTCTTCATCTTCTT 115
||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 29 TTCTCGCGACTCTCTAGGGTTAGGGTTTGTTGAATTTCACGCGTTATTCTTCTTCGTCTT 88
Query 116 CTGCAATTCGCAACTAGAGAAGCTAATTCCATTGAAGTTAAGGTGGGGATAATTTTTGGT 175
|| |||||||| |||||||||| |||||||||||||| |||||| |||||| ||||||||
Sbjct 89 CTACAATTCGCGACTAGAGAAGTTAATTCCATTGAAGGTAAGGTTGGGATAGTTTTTGGT 148
Query 176 TTTAGAAGATACTAATGGCTGGAGTACTAGCTGGGGAATGTTCTTACAGTGAGAGTGGAG 235
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TTTAGGAGATACTAATGGCTGGAGTACTAGCTGGGGAATGTTCTTACAGTGAGAGTGGAG 208
Query 236 TTTCATCACACTCAAGGAATTCCCATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTG 295
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 209 TTTCATCACACTCGAGGAATTCTCATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTG 268
Query 296 GAAGAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 GAAGAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGG 328
Query 356 AAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAA 414
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 329 AAACGTACCTCCGCAAATCCTACTGTACGTTTTTGCAGGACTTGGGCATGAGATTGAAA 387
> Ahg492906 jgi|Araly1|492906|fgenesh2_kg.7__2339__AT4G19600.1
Length=2061
Score = 830 bits (449), Expect = 0.0
Identities = 574/636 (90%), Gaps = 2/636 (0%)
Strand=Plus/Plus
Query 457 GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCA 516
||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 447 GTTACAATAGCTACAGCAATAATCTTCTGTCATCGATTCTTCATTCGCCAGTCACATGCT 506
Query 517 AAGAATGACAGAAGGACCATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTGAGGAA 576
| ||||||||||||||| ||||| || || |||||||||||||||||||| ||||| |||
Sbjct 507 AGGAATGACAGAAGGACGATTGCTACAGTCTGCATGTTCCTTGCTGGAAAAGTTGAAGAA 566
Query 577 ACTCCACGGCCCTTGAAAGATGTTATTTTTGTCTCCTATGAGATTATAAACAAGAAGGAT 636
|||||| |||| || |||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct 567 ACTCCAAGGCCGTTAAAAGATGTTATTGTTGTCTCCTATGAGATAATACACAAGAAGGAT 626
Query 637 CCTGGTGCTTCCCAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATA 696
||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 CCTACTACTGCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATA 686
Query 697 TTAAACGGAGAAAAAATTGTTCTTTCCACTCTAGGCTTTGACCTCAATGTTTATCATCCT 756
||| |||||||| ||||| ||||| || || || |||||| |||| ||||||||||||
Sbjct 687 CTAAGTGGAGAAAAGATTGTACTTTCTACGCTGGGGTTTGACTTCAACGTTTATCATCCT 746
Query 757 TATAAACCCCTGGTAGAAGCAATAAAGAAATTTAAGGTTGCACAGAATGCACTTGCCCAA 816
|||||||| || |||||||| ||||||||||| ||||| ||||||||||| || ||||||
Sbjct 747 TATAAACCTCTTGTAGAAGCGATAAAGAAATTCAAGGTCGCACAGAATGCTCTGGCCCAA 806
Query 817 GTTGCATGGAATTTTGTTAATGATGGTCTACGGACATCTCTCTGCCTGCAATTTAAGCCT 876
|||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct 807 GTTGCATGGAATTTTGTTAACGATGGTCTGCGGACGTCACTCTGCCTGCAATTTAAGCCT 866
Query 877 CATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAGTTACCA 936
|| || |||||||| || ||||| |||||||| || ||||||||||||||||| ||||||
Sbjct 867 CACCACATTGCGGCGGGAGCAATTTTTCTTGCTGCGAAGTTCCTTAAAGTGAAATTACCA 926
Query 937 TCAGATGGAGAGAAGGTTTGGTGGCAAGAATTTGATGTCACACC-CAGACAACTGGAGGA 995
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 927 TCAGATGGAGAGAAGGTTTGGTGGCAAGAATTTGATGTCACACCTC-GACAACTAGAGGA 985
Query 996 TGTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAATCGTGTCCCTGCATCTCAAGGAAG 1055
|||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||
Sbjct 986 TGTTAGCAACCAAATGCTTGAGCTCTATGAGCAAAACCGAGTTCCTGCATCTCAAGGAAG 1045
Query 1056 TGAAGTCGAGAGTAGTGTAGGTGGAGGGTCAGCTCA 1091
|||||||| ||||||||||||||||| ||||||||
Sbjct 1046 CGAAGTCGAAAGTAGTGTAGGTGGAGGATCAGCTCA 1081
Score = 291 bits (157), Expect = 2e-77
Identities = 213/239 (89%), Gaps = 7/239 (3%)
Strand=Plus/Plus
Query 181 AAGATACTAATGGCTGGAGTACTA---GCTGGGGAATGTTC-TTACAGTGAGAGTGG-AG 235
||||||| ||||||||||||| || |||||||| ||||| || | |||||||||| |
Sbjct 201 AAGATACCAATGGCTGGAGTATTAGCTGCTGGGGATTGTTCATT-CGGTGAGAGTGGCA- 258
Query 236 TTTCATCACACTCAAGGAATTCCCATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTG 295
||||||| |||| ||||||||| |||||||||| || |||||| |||||||||||||||
Sbjct 259 TTTCATCTTACTCCAGGAATTCCAATGAAAAGCAGGACGAGGTTGCCCGCTGGTATTTTG 318
Query 296 GAAGAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGG 355
|||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 319 GAAGGAAAGAAATAGAAGAAAATTCACCATCAAGGTTGGATAGTATTGACTTAAAGAAGG 378
Query 356 AAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAA 414
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||
Sbjct 379 AAACATACCTCCGCAAGTCATACTGTACATTTTTGCAGGACTTAGGCATGAGATTAAAA 437
> Ahg356527 jgi|Araly1|356527|fgenesh1_pg.C_scaffold_8000314
Length=2625
Score = 207 bits (112), Expect = 2e-52
Identities = 204/245 (83%), Gaps = 19/245 (8%)
Strand=Plus/Plus
Query 45 CCTCTTTCGTTTTCTCGCGACTCTCTAGGGTTAGGGTTTGTTGATTTTCACGCGTTATTC 104
||||| |||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1337 CCTCTATCGTTTTCTCGCGACTCTCTAGGGTTAGGGTTTGTTTAATTTCACGCATTATTC 1396
Query 105 TTCATCTTCTTCT---GCAATTCGCAACTAGAGAAG--C-TAATTCCATTGAAG-TTAAG 157
||| ||||||||| ||||||||| ||| |||||| | || || ||| | || ||
Sbjct 1397 TTCTTCTTCTTCTTCTGCAATTCGCGACTGGAGAAGTACCTATTTTCATCGCAGGTT--- 1453
Query 158 GTGGGGATAATTTTTGGTTTTAGAAGATACT--AATGGCTGGAGTACTAGCTGGGGAATG 215
||| ||| |||| | || ||||| ||||| |||||||||||| |||||||| |||||
Sbjct 1454 -TGG--ATA-TTTTCG-TTCTAGAATATACTCTAATGGCTGGAGTTCTAGCTGGAGAATG 1508
Query 216 TTCTTACAGTGAGAGTGGAGTTTCATCACACTCAAGGAATTCCCATGAAAAGCAAGA-AG 274
||| |||||||||| |||||||||||||| ||| |||||||| |||| ||||||||| |
Sbjct 1509 TTCGTACAGTGAGATTGGAGTTTCATCACTCTCCAGGAATTCTCATGTAAAGCAAGACA- 1567
Query 275 AGGTT 279
|||||
Sbjct 1568 AGGTT 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80903680380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5