BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45275.1
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494458 jgi|Araly1|494458|fgenesh2_kg.8__274__AT5G45275.1 2972 0.0
Ahg948476 jgi|Araly1|948476|scaffold_800363.1 1816 0.0
Ahg492916 jgi|Araly1|492916|fgenesh2_kg.7__2349__AT4G19450.1 1389 0.0
Ahg915596 jgi|Araly1|915596|Al_scaffold_0008_347 931 0.0
Ahg948474 jgi|Araly1|948474|scaffold_800361.1 551 7e-156
> Ahg494458 jgi|Araly1|494458|fgenesh2_kg.8__274__AT5G45275.1
Length=1865
Score = 2972 bits (1609), Expect = 0.0
Identities = 1785/1870 (95%), Gaps = 12/1870 (1%)
Strand=Plus/Plus
Query 3 ttttttttCTCGATTCGTCGAAACAAGTGAAGAAGCTCGAATCAAAC----GAGTGAGAG 58
|||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||
Sbjct 1 TTTTTTTTCTCGATTCGTCGTAACCAGTGAAGAAGCTCGAATCAAACAAAAGAGAGAGAG 60
Query 59 AGAACACaaaaaacaaaatcaaaaTCTCCGGTGAATCAGGAACTGTACGTCGGAGATTGT 118
|||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 61 AGAACA-AAAAAA-AAAATCAAAATCTCCGGTGATTCAGGAACCGTACGTCGGAGATTGT 118
Query 119 GAAAACACGGTG-GTCG-AAAAAGATGGCGGGACAATCACGAAAATGGATGATTCTGGTA 176
|||||||||| | | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 119 -TAAACACGGTGAG-GGAAAAAAGATGGCGGGACAATCACGAAAATGGATGATTCTCGTA 176
Query 177 GCGACGATTTGGATTCAAGCATTCACCGGTACGAATTTCGATTTCTCGACGTATTCGTCG 236
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 177 GCGACGATCTGGATTCAAGCTTTCACTGGTACGAATTTCGATTTCTCGACGTACTCGTCG 236
Query 237 AATTTGAAATCGGTTCTAGGGATTTCGCAAGTACAATTGAATTATCTCGCCGTCGCTTCG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 237 AATTTGAAATCGGTTCTAGGGATTTCGCAAGTACAATTGAATTATCTCGCCGTTGCTTCG 296
Query 297 GATCTTGGTAAAGTTTTCGGTTGGTCATCGGGACTTGCACTCTTGTATTTCCCTCTTTGG 356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATCTTGGGAAAGTTTTCGGTTGGTCATCGGGACTTGCACTCTTGTATTTCCCTCTTTGG 356
Query 357 ACGGTTCTTTTCGCGGCGGCGATTATGGGTTTCGTTGGTTATGGTGTTCAATGGCTCGTC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACGGTTCTTTTCGCGGCGGCGATTATGGGTTTCGTTGGTTATGGTGTTCAATGGCTCGTC 416
Query 417 ATCACTAACGTCATCTCTTTGCCTTATATTCTGGTGTTTCTGTGTTGTTTGCTAGCTGGG 476
||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 417 ATCACTAACGTTATCTCTTTGCCTTATATTCTGGTATTTCTATGTTGTTTACTAGCTGGG 476
Query 477 CTAAGTATCTGTTGGTTCAACACAGTCTGCTTTGTGCTCTGCATCAGAAACTTCCCTGCA 536
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 477 CTAAGTATCTGTTGGTTTAACACAGTCTGCTTTGTGCTCTGTATCAGAAACTTTCCAGCA 536
Query 537 AACAGATCACTTGCACTTTCTCTCACAGTGAGCTTTAATGGTGTAAGTGCTGCTTTATAC 596
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 537 AACAGATCACTTGCACTTTCTCTCACAGTGAGCTTTAATGGCGTAAGTGCTGCTTTGTAC 596
Query 597 ACTCTTGCTTACAACGCAATCAATCCTGTTTCTACAGAGCTATACCTACTCTTAAACGCT 656
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 597 ACTCTTGCTTATAACGCAATCAATCCTGTTTCTACAGAACTATACCTACTCTTAAACGCT 656
Query 657 CTTGTACCTCTTTTTGTCTCATTTGCTGCACTCATCCCTATTCTTCGCCAACCGCCTCTT 716
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 657 CTTGTACCTCTTTTTGTTTCATTCGCTGCTCTCATCCCTATTCTTCGCCAACCGCCTCTT 716
Query 717 GAACCTCTTCCACCAGATGGAGTTCGAAGAGACTCTCTCATGTTTCTATTGCTTAACATA 776
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 717 GAACCTCTTCCACCAGATGGAGTTCGAAGAGACTCTCTCATGTTTCTCTTGCTTAACATA 776
Query 777 TTAGCGGTCTTGAACGGTGTTTATCTGCTTCTCTTTCGTTCAAAGACTTCTGATGTAACT 836
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTAGCGGTCTTGAATGGTGTTTATCTGCTTCTCTTTCGTTCAAAGACTTCTGATGTAACT 836
Query 837 TCAGCTCGTCTTCTCTTTGGTGGATCAATACTTCTCTTGATTCTTCCTCTATGCCTCCCT 896
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 837 TCAGCTCGTCTTCTCTTTGGTGGATCATTACTTCTCTTGATTCTTCCTCTATGCCTTCCT 896
Query 897 GGTCTAGTCTACGCTCGCAATTGGTATCTACACAACATCCACTCCAGCTTCCGTTTAGAA 956
||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 897 GGTCTAGTCTATGCTCGTAATTGGTATCTACACAATATCCACTCCAGTTTCCGTCTAGAA 956
Query 957 GGTTCTGGTTTCATTCTTGTTGATGTTGATGAGCTTGAGATGCATAAAGGAATGGTGACA 1016
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GGTTCTGGTTTTATTCTTGTTGATGTTGATGAGCTTGAGATGCATAAAGGAATGGTGACA 1016
Query 1017 CGTGAAGCCAGCCTTGAAGGCTACCAGTTGCTTAACGATGATGTAGTGCGAGCTGTCAAT 1076
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1017 CGTGAAGCCAGCCTTGAAGGCTACCAGTTGCTAAACGATGATGTAGTGCGAGCTGTCAAT 1076
Query 1077 ACTCCTGATCAGAAGAGTTTCATTGAAGATGACGACGGATGTTGTTGCACAAAGGTCATT 1136
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 1077 ACTCCTGATCAGAAGAGTTTCATTGAAGATGACGACGGATGTTGTTGCACTAAGCTTATT 1136
Query 1137 ACAAGAAATCAGCTTGGAATG-TTGGGAGAGGAACATCCTCTATCTTTCCTCTTATGCAG 1195
||||||||||||||||| ||| |||| ||| ||||||||| ||||||| |||||||||||
Sbjct 1137 ACAAGAAATCAGCTTGGGATGCTTGG-AGAAGAACATCCTTTATCTTTACTCTTATGCAG 1195
Query 1196 ATCAGATTTCTGGCTTTACTATATAGCCTATTTTTGCGGCGGCACGATTGGACTGGTTTA 1255
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1196 ATCAGATTTCTGGCTTTACTATATAGCCTACTTTTGCGGCGGCACGATTGGGCTGGTTTA 1255
Query 1256 CAGCAACAACCTGGGACAGATTGCACAATCTTTAGGACAAAGCTCTGAGACAACAACTCT 1315
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1256 TAGCAACAACCTGGGACAGATTGCACAATCTTTAGGACAAAGCTCAGAGACAACAACTCT 1315
Query 1316 TGTCACGCTTTATTCGTCTTTCTCATTCTTCGGTAGATTACTTTCAGCAACACCAGACTA 1375
||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1316 TGTAACGCTTTATTCGTCTTTCTCATTCTTTGGTCGATTACTTTCAGCAACACCAGACTA 1375
Query 1376 TATCAGAGCGAAGGTTTATTTTGCTAGAACTGGGTGGCTAGCCGTTGCTCTTTTACCAAC 1435
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1376 TATCAGAGCGAAGGTTTATTTTGCTAGAACAGGGTGGCTAGCCGTTGCTCTTTTACCAAC 1435
Query 1436 CACAATTGCTCTTTTCTTGTTGGCATCATCAGGAAGCTTGGCAGCGTTACAAGCAGGAAC 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CACAATTGCTCTTTTCTTGTTGGCATCATCAGGAAGCTTGGCAGCGTTACAAGCAGGAAC 1495
Query 1496 TGCTCTAATCGGTCTAAGTTCGGGTTTCATATTTGCAGCAGCGGTTTCCATAACATCTGA 1555
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AGCTCTAATCGGTCTAAGCTCGGGTTTCATATTTGCAGCAGCGGTTTCCATAACATCTGA 1555
Query 1556 GCTTTTTGGACCCAATAGCGTTGGGGTTAACCACAACATCCTCATCACAAACATACCGAT 1615
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GCTTTTTGGACCCAACAGCGTCGGGGTTAACCACAACATCCTCATCACAAACATACCGAT 1615
Query 1616 AGGATCGTTGGTCTACGGTTTCTTAGCTGCTTTGGTCTATGAATCCCATAGCGTGGCTGG 1675
|||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 1616 AGGATCATTGGTCTACGGTTTCTTAGCTGCTTTGGTCTATGAATCCCACAGTGTGGCTAG 1675
Query 1676 GTCAAAGACCGAGTCGGTTATATGTATGGGAAGAGACTGTTATCTCCAAACGTTTATGTG 1735
||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||
Sbjct 1676 GTCAAAGACCGAGTCAGTTATATGTATGGGACGAGACTGTTATCTCCTAACGTTTGTGTG 1735
Query 1736 GTGGGGATGCTTGTCGGTGATTGGACTAGCTTCAAGTGTTGTCTTGTTTCTGAGAACCAG 1795
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1736 GTGGGGATGCTTGTCGGTGATTGGACTAGCTTCAAGTGTTGTTTTGTTTCTGAGAACTAG 1795
Query 1796 ACGAGCCTATCAACGTTTTGAACAAGATCGGATAACTTCCAGCATGCTCTATTCTTAGTA 1855
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 1796 ACGAGCCTATCAACGTTTTGAACAAGATCGTATAACTTCGAGCATGCTCTATTCTTAGAA 1855
Query 1856 TTTCCTCCAA 1865
||| ||||||
Sbjct 1856 TTTTCTCCAA 1865
> Ahg948476 jgi|Araly1|948476|scaffold_800363.1
Length=1138
Score = 1816 bits (983), Expect = 0.0
Identities = 1084/1134 (96%), Gaps = 2/1134 (0%)
Strand=Plus/Plus
Query 736 GAGTTCGAAGAGACTCTCTCATGTTTCTATTGCTTAACATATTAGCGGTCTTGAACGGTG 795
|||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1 GAGTTCGACGAGATTCTCTCATGTTTCTCTTGCTTAACATATTAGCGGTCTTGAATGGTG 60
Query 796 TTTATCTGCTTCTCTTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTTG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTATCTGCTTCTCTTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTTG 120
Query 856 GTGGATCAATACTTCTCTTGATTCTTCCTCTATGCCTCCCTGGTCTAGTCTACGCTCGCA 915
|||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 121 GTGGATCATTACTTCTCTTGATTCTTCCTCTATGCCTTCCTGGTCTAGTCTATGCTCGTA 180
Query 916 ATTGGTATCTACACAACATCCACTCCAGCTTCCGTTTAGAAGGTTCTGGTTTCATTCTTG 975
|||||||||||||||| || |||||||| || ||| ||||||||||||||||||||||||
Sbjct 181 ATTGGTATCTACACAATATTCACTCCAGTTTTCGTCTAGAAGGTTCTGGTTTCATTCTTG 240
Query 976 TTGATGTTGATGAGCTTGAGATGCATAAAGGAATGGTGACACGTGAAGCCAGCCTTGAAG 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGATGTTGATGAGCTTGAGATGCATAAAGGAATGGTGACACGTGAAGCCAGCCTTGAAG 300
Query 1036 GCTACCAGTTGCTTAACGATGATGTAGTGCGAGCTGTCAATACTCCTGATCAGAAGAGTT 1095
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTACCAGTTGCTAAACGATGATGTAGTGCGAGCTGTCAATACTCCTGATCAGAAGAGTT 360
Query 1096 TCATTGAAGATGACGACGGATGTTGTTGCACAAAGGTCATTACAAGAAATCAGCTTGGAA 1155
||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |
Sbjct 361 TCATTGAAGATGACGACGGATGTTGTTGCACTAAGCTTATTACAAGAAATCAGCTTGGGA 420
Query 1156 TG-TTGGGAGAGGAACATCCTCTATCTTTCCTCTTATGCAGATCAGATTTCTGGCTTTAC 1214
|| |||| ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 421 TGCTTGG-AGAAGAACATCCTTTATCTTTACTCTTATGCAGATCAGATTTCTGGCTTTAC 479
Query 1215 TATATAGCCTATTTTTGCGGCGGCACGATTGGACTGGTTTACAGCAACAACCTGGGACAG 1274
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 480 TATATAGCCTACTTTTGCGGCGGCACGATTGGGCTGGTTTATAGCAACAACCTGGGACAG 539
Query 1275 ATTGCACAATCTTTAGGACAAAGCTCTGAGACAACAACTCTTGTCACGCTTTATTCGTCT 1334
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 540 ATTGCACAATCTTTAGGACAAAGCTCAGAGACAACAACTCTTGTAACGCTTTATTCGTCT 599
Query 1335 TTCTCATTCTTCGGTAGATTACTTTCAGCAACACCAGACTATATCAGAGCGAAGGTTTAT 1394
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCTCATTCTTTGGTCGATTACTTTCAGCAACACCAGACTATATCAGAGCGAAGGTTTAT 659
Query 1395 TTTGCTAGAACTGGGTGGCTAGCCGTTGCTCTTTTACCAACCACAATTGCTCTTTTCTTG 1454
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTGCTAGAACAGGGTGGCTAGCCGTTGCTCTTTTACCAACCACAATTGCTCTTTTCTTG 719
Query 1455 TTGGCATCATCAGGAAGCTTGGCAGCGTTACAAGCAGGAACTGCTCTAATCGGTCTAAGT 1514
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 TTGGCATCATCAGGAAGCTTGGCAGCGTTACAAGCAGGAACAGCTCTAATCGGTCTAAGC 779
Query 1515 TCGGGTTTCATATTTGCAGCAGCGGTTTCCATAACATCTGAGCTTTTTGGACCCAATAGC 1574
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 TCGGGTTTCATATTTGCAGCAGCGGTTTCCATAACATCTGAGCTTTTTGGACCCAACAGT 839
Query 1575 GTTGGGGTTAACCACAACATCCTCATCACAAACATACCGATAGGATCGTTGGTCTACGGT 1634
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 840 GTCGGGGTTAACCACAACATCCTCATCACAAACATACCGATAGGATCATTGGTCTATGGG 899
Query 1635 TTCTTAGCTGCTTTGGTCTATGAATCCCATAGCGTGGCTGGGTCAAAGACCGAGTCGGTT 1694
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 900 TTCTTAGCTGCTTTGGTCTATGAATCCCATAGCGTGGCTGGCTCAAAGACAGAGTCGGTT 959
Query 1695 ATATGTATGGGAAGAGACTGTTATCTCCAAACGTTTATGTGGTGGGGATGCTTGTCGGTG 1754
|||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct 960 ATATGTATGGGACGAGACTGTTACCTCCTAACGTTTGTGTGGTGGGGATGCTTGTCGGTG 1019
Query 1755 ATTGGACTAGCTTCAAGTGTTGTCTTGTTTCTGAGAACCAGACGAGCCTATCAACGTTTT 1814
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1020 ATTGGACTAGCTTCAAGTGTTGTCTTGTTTTTGAGAACTAGACGAGCCTATCAACGTTTT 1079
Query 1815 GAACAAGATCGGATAACTTCCAGCATGCTCTATTCTTAGTATTTCCTCCAATGA 1868
|||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 1080 GAACAAGATCGGATAACTTCAAGCATGCTCTATTCTTAGAATTTTCTCCAATGA 1133
> Ahg492916 jgi|Araly1|492916|fgenesh2_kg.7__2349__AT4G19450.1
Length=1910
Score = 1389 bits (752), Expect = 0.0
Identities = 1420/1735 (82%), Gaps = 76/1735 (4%)
Strand=Plus/Plus
Query 141 ATGGCGGGACAATCACGAAAATGGATGATTCTGGTAGCGACGATTTGGATTCAAGCATTC 200
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 72 ATGGCGGGGCAATCACGAAAATGGATGATTCTGGTGGCGACGATATGGATTCAAGCTTTT 131
Query 201 ACCGGTACGAATTTCGATTTCTCGA-CGTATTCGTCGA-ATTTGAAATCGGTTCTAGGGA 258
||||| || |||||||||||||| | | || || || | |||||||||||||||||||||
Sbjct 132 ACCGGAACAAATTTCGATTTCTC-AGCTTACTCATC-AGATTTGAAATCGGTTCTAGGGA 189
Query 259 TTTCGCAAGTACAATTGAATTATCTCGCCGTCGCTTCGGATCTTGGTAAAGTTTTCGGTT 318
|||| || || || | || || |||||||| ||||| ||||| || ||||||||||| |
Sbjct 190 TTTCACAGGTGCAGCTAAACTACCTCGCCGTGGCTTCAGATCTCGGAAAAGTTTTCGGAT 249
Query 319 GGTCATCGGGACTTGCACTCT-TGTATTTCCCTCTTTGGACGGTTCTTTTCGCGGCGGCG 377
|||| ||||| || ||||| | |||||||||| ||||||||||| |||||||||||||||
Sbjct 250 GGTCGTCGGGGCTAGCACT-TATGTATTTCCCGCTTTGGACGGTGCTTTTCGCGGCGGCG 308
Query 378 ATTATGGGTTTCGTTGGTTATGGTGTTCAATGGCTCGTCATCACTAACGTCATCTCTTTG 437
||||||| ||||| |||||||| ||||| ||||||||||||||| | |||||||||||
Sbjct 309 TTTATGGGATTCGTCGGTTATGGAGTTCAGTGGCTCGTCATCACTCATTTCATCTCTTTG 368
Query 438 CCTTATATTCTGGTGTTTCTGTGTTGTTTGCTAGCTGGGCTAAGTATCTGTTGGTTCAAC 497
||||||||| |||||||||| ||||| || || ||||| |||||||| ||||||||||||
Sbjct 369 CCTTATATTATGGTGTTTCTCTGTTGCTTACTTGCTGGTCTAAGTATATGTTGGTTCAAC 428
Query 498 ACAGTCTGCTTTGTGCTCTGCATCAGAAACTTCCCTGCAAACAGATCACTTGCACTTTCT 557
|||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||
Sbjct 429 ACAGTCTGCTTTGTTCTCTGCATTAGTAACTTCCCTGCAAACAGATCACTTGCTCTTTCC 488
Query 558 CTCACAGTGAGCTTTAATGGTGTAAGTGCTGCTTTATACACTCTTGCTTACAACGCAATC 617
||||| |||||||| ||||| ||||| ||||| ||||| ||||| ||||| |||||||||
Sbjct 489 CTCACCGTGAGCTTCAATGGCGTAAGCGCTGCGTTATATACTCTCGCTTATAACGCAATC 548
Query 618 AATCCTGTTTCTACAGAGCTATACCTACTCTTAAACGCTCTTGTACCTCTTTTTGTCTCA 677
||||| ||| ||||||||||||| || ||||| |||||| |||| || |||||||
Sbjct 549 AATCCAACCTCTCCAGAGCTATACCTTCTTTTAAATGCTCTTATACCGCTCATTGTCTC- 607
Query 678 TTT-GCTGCACTCATCCCTATTCTTCGCCAACCGCCTCTTGAACCTCTTCCACCAGATGG 736
||| ||||| ||||||| |||||||||||||||||| |||| |||||||||||||||||
Sbjct 608 TTTCACTGCAATCATCCCGATTCTTCGCCAACCGCCTTTTGAGCCTCTTCCACCAGATGG 667
Query 737 AGTTCGAAGAGACTCTCTCATGTTTCTATTGCTTAACATATTAGC-GGTCTTGAACGGTG 795
|||||| | ||||||||||||||||||||||| |||||| | || | | || |||||||
Sbjct 668 AGTTCGTCGTGACTCTCTCATGTTTCTATTGCTCAACATACTCGCTGCT-TTAAACGGTG 726
Query 796 TTTATCTGCTTCTCTTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTTG 855
||||||| ||||| ||| | ||||| | ||||| |||| || ||||| || |||||||
Sbjct 727 TTTATCTCCTTCTATTTGGGTCAAACTCAACTGATCTAACCTCTGCTCGGCTCCTCTTTG 786
Query 856 GTGGAT-CAATAC-TTCTCTTGATTCTT-CCTCTATGCCTCCCTGGTCTAGTCTA-CGCT 911
|||| | | || | | || |||| |||| ||| |||| | |||||||||||| | |||
Sbjct 787 GTGG-TGCTAT-CGTCCTTTTGA-TCTTCCCTTTATGTATTCCTGGTCTAGTC-ATCGCC 842
Query 912 CGCAATTGGTATCTA-CACAAC-ATCCACTCCAGCTTCCGTTTAGAAGGTTCTGGTTTCA 969
|| ||||||||| | | | || |||||| |||| |||||| ||||||||||||||||||
Sbjct 843 CGGAATTGGTAT-AACCGC-ACAATCCACACCAGTTTCCGTCTAGAAGGTTCTGGTTTCA 900
Query 970 TTCTTGTTGATGTTGATGAGCTTGAGATGCATAAAGGAATGGT-GACACGTGAAGCCAGC 1028
||||||||||| |||||| |||||| |||||||||| ||| | | ||| |||||| |
Sbjct 901 TTCTTGTTGATCCTGATGACCTTGAGTTGCATAAAGGGATGCTTG-CACATGAAGCAAAT 959
Query 1029 CTTGAAGGCTACCAGTTGCTTAACGATGATGTAGTGCGAGCTGTCAATACTCCTGATCAG 1088
| |||||||||||| ||||| || |||||||| |||| | || || || | | ||
Sbjct 960 CGTGAAGGCTACCAATTGCTGAATGATGATGTGGTGC-A------AA-AC-CCGGTTAAG 1010
Query 1089 AA-G-AGTTTCATTGAAGATGACGA--CGGATG--T-T-GTTGCACA-AAGGTCATTACA 1139
| | || | |||| || ||||| | |||| | | |||||| | ||| | ||||||
Sbjct 1011 ACCGTAGCTG--TTGAGGAAGACGATACTGATGAGTCTTGTTGCA-AGAAGCTTATTACA 1067
Query 1140 AGAAATCAGCTTGGAATGTT-GGGAGAG-GAACATCCTCTATCTTTCCTCTTATGCAGAT 1197
||| ||||||||| || ||| ||| || |||||| || | || | |||||| ||||||
Sbjct 1068 AGAGATCAGCTTG-AAGGTTTGGG-GATTGAACATTCTTTGTCGCTGCTCTTAGGCAGAT 1125
Query 1198 CAGATTTCTGGCTT-TACTATATAGCCTATTTTTGCGGCGGCACGATTGGACTGGTTTAC 1256
| ||||||||| || |||||||| || ||||| ||||| || || |||||||| || |||
Sbjct 1126 CTGATTTCTGG-TTATACTATATCGCTTATTTCTGCGGTGGAACCATTGGACTTGTGTAC 1184
Query 1257 AGCAACAACCTGGGACAGATTGCACAATCTTTAGGACAAAGCTCTGAGACAACAACTCTT 1316
||||||||||| ||||||||||| || ||||||||||||||||| | || |||||||||
Sbjct 1185 AGCAACAACCTCGGACAGATTGCTCAGTCTTTAGGACAAAGCTCAAATACCACAACTCTT 1244
Query 1317 GTCACGCTTTATTCGTCTTTCTCATTCTTCGGTAGATTACTTTCAGCAACACCAGACTAT 1376
||||| |||||||| |||||||||||||| || ||||| ||||| |||||||| || |||
Sbjct 1245 GTCACACTTTATTCCTCTTTCTCATTCTTTGGAAGATTGCTTTCTGCAACACCTGATTAT 1304
Query 1377 ATCAGAGCGAAGGTTTATTTTGCTAGAACTGGGTGGCTAGCCGTTGCTCTTTTACCAAC- 1435
||| ||||||||||||||||||| ||||| |||||| |||| | || || ||||||||
Sbjct 1305 ATCCGAGCGAAGGTTTATTTTGCGAGAACAGGGTGGTTAGCAATCGCGCTATTACCAACG 1364
Query 1436 CACAATT-GCTCTTTTCTTG-TTGGCATCATCAGGAA--GCTTGGCAGCGTTACAAGCAG 1491
| || || || ||||||||| ||| |||||||||||| || | |||| ||||||||||
Sbjct 1365 C-CA-TTCGCGCTTTTCTTGCTTG-CATCATCAGGAAATGCAT--CAGCATTACAAGCAG 1419
Query 1492 GAACTGCTCTAATCGGTCTAAGTTC-GGGTTTCATATTTGCAGCAGCGGTTTCCATAACA 1550
|||| || || || ||| |||| || |||||| ||||| ||||||||||||||||| |||
Sbjct 1420 GAACAGCGCTGATGGGTTTAAGCTCCGGGTTT-ATATTCGCAGCAGCGGTTTCCATCACA 1478
Query 1551 TCTGAGCTTTTTGGACCCAATAGCGTTGGGGTTAACCACAACATCCTCATCACAAACATA 1610
|| |||||||||||||| || || ||||| ||||||||||| ||| | ||||||||||||
Sbjct 1479 TCAGAGCTTTTTGGACCAAACAGTGTTGGAGTTAACCACAATATCTTGATCACAAACATA 1538
Query 1611 CCGATAGGATCGTTGGTCTACGGTTTCTTAGCTGCTTTGGTCTATGAATCCCATAGCGTG 1670
|| |||||||| ||| |||| || ||||| ||||| ||||||||||| || ||| | |
Sbjct 1539 CCAATAGGATCATTGATCTATGGATTCTTGGCTGCATTGGTCTATGACTCACATGGTTTC 1598
Query 1671 GCTGGGTC-AAA--GA---C--CG-AGTCGGTTATATGTATGGGAAGAGACTGTTATCTC 1721
| ||| | ||| || | || ||||||| | ||||||||| |||| |||||| |
Sbjct 1599 ACCGGGACCAAATCGATGACGGCGGAGTCGGTGGTGTGTATGGGACGAGATTGTTAT-TA 1657
Query 1722 CAA-ACGTTTATGTGGTGGGGATGCTTGTCGGTGA-TTGGACTAGCTTCAAGTGTTGTCT 1779
| || ||| |||||||||| |||||||| | | |||| |||| ||| ||| |||| |
Sbjct 1658 CTTGACCTTTGTGTGGTGGGGTTGCTTGTCTCT-ACTTGGGCTAGGTTCGAGTCTTGTGT 1716
Query 1780 TGTTTCTGAGAACCAGACGAGCCTATCAACGTTTTGAACAAGATCGGATAACTTC 1834
||||| | ||||| |||||||| |||||||| |||||| ||| ||| |||| |||
Sbjct 1717 TGTTTATTAGAACGAGACGAGCTTATCAACGGTTTGAAGAAGCTCGCATAAGTTC 1771
> Ahg915596 jgi|Araly1|915596|Al_scaffold_0008_347
Length=1365
Score = 931 bits (504), Expect = 0.0
Identities = 542/561 (97%), Gaps = 0/561 (0%)
Strand=Plus/Plus
Query 450 GTGTTTCTGTGTTGTTTGCTAGCTGGGCTAAGTATCTGTTGGTTCAACACAGTCTGCTTT 509
|||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 103 GTGTTTCTATGTTGTTTACTAGCTGGGCTAAGTATTTGTTGGTTTAACACAGTCTGCTTT 162
Query 510 GTGCTCTGCATCAGAAACTTCCCTGCAAACAGATCACTTGCACTTTCTCTCACAGTGAGC 569
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 163 GTGCTCTGCATCAGAAACTTTCCTGCAAACAGATCACTTGCTCTTTCTCTCACAGTGAGC 222
Query 570 TTTAATGGTGTAAGTGCTGCTTTATACACTCTTGCTTACAACGCAATCAATCCTGTTTCT 629
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTTAATGGCGTAAGTGCTGCTTTATACACTCTTGCTTACAACGCAATCAATCCTGTTTCT 282
Query 630 ACAGAGCTATACCTACTCTTAAACGCTCTTGTACCTCTTTTTGTCTCATTTGCTGCACTC 689
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 283 ACAGAGCTATACCTACTTTTAAACGCTCTTGTACCTCTTTTTGTCTCATTCGCTGCTCTC 342
Query 690 ATCCCTATTCTTCGCCAACCGCCTCTTGAACCTCTTCCACCAGATGGAGTTCGAAGAGAC 749
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 343 ATTCCTATTCTTCGCCAACCGCCTCTTGAACCTCTTCCACCCGATGGAGTTCGAAGAGAC 402
Query 750 TCTCTCATGTTTCTATTGCTTAACATATTAGCGGTCTTGAACGGTGTTTATCTGCTTCTC 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TCTCTCATGTTTCTATTGCTTAACATATTAGCGGTCTTGAACGGTGTTTATCTGCTTCTC 462
Query 810 TTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTTGGTGGATCAATACTT 869
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 463 TTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTTAGTGGATCAATACTT 522
Query 870 CTCTTGATTCTTCCTCTATGCCTCCCTGGTCTAGTCTACGCTCGCAATTGGTATCTACAC 929
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 523 CTCTTGATTCTTCCTCTATGCCTTCCTGGTCTAGTCTATGCTCGTAATTGGTATCTACAC 582
Query 930 AACATCCACTCCAGCTTCCGTTTAGAAGGTTCTGGTTTCATTCTTGTTGATGTTGATGAG 989
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 AATATCCACTCCAGTTTCCGTTTAGAAGGTTCTGGTTTCATTCTTGTTGATGTTGATGAG 642
Query 990 CTTGAGATGCATAAAGGAATG 1010
|||||||||||||| ||||||
Sbjct 643 CTTGAGATGCATAAGGGAATG 663
Score = 392 bits (212), Expect = 5e-108
Identities = 252/271 (93%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 1117 GTTGTTGCACAAAGGTCATTACAAGAAATCAGCTTGGAATG-TTGGGAGAGGAACATCCT 1175
|||||||||| ||| |||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 683 GTTGTTGCACTAAGTTCATTACAAGAAATCAGCTTGGGATGCTT-GGAGAGGAACATCCT 741
Query 1176 CTATCTTTCCTCTTATGCAGATCAGATTTCTGGCTTTACTATATAGCCTATTTTTGCGGC 1235
|||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 742 CTATCTTTACTCTTATGCAGATCAGACTTCTGGCTTTACTATATTGCCTATTTTTGTGGT 801
Query 1236 GGCACGATTGGACTGGTTTACAGCAACAACCTGGGACAGATTGCACAATCTTTAGG-ACA 1294
||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 802 GGCACAATTGGACTTGTTTATAGCAACAACCTGGGACAGATTGCACAATCTTTAGGTA-A 860
Query 1295 AAGCTCTGAGACAACAACTCTTGTCACGCTTTATTCGTCTTTCTCATTCTTCGGTAGATT 1354
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 861 AAAATCTGAGACAACAACTCTTGTCACGCTTTATTCGTCTTTCTCATTCTTCGGTCGATT 920
Query 1355 ACTTTCAGCAACACCAGACTATATCAGAGCG 1385
||||||||||||||||||||||||||||||
Sbjct 921 GCTTTCAGCAACACCAGACTATATCAGAGCG 951
Score = 351 bits (190), Expect = 8e-96
Identities = 206/214 (96%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 1640 AGCTGCTTTGGTCTATGAATCCCATAGCGTGGCTGGGTCAAAGACCGAGTCGGTTATATG 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AGCTGCTTTGGTCTATGAATCCCATAGCGTGGCTGGGTCAAAGACCGAGTCGGTTATATG 1211
Query 1700 TATGGGAAGAGACTGTTATCTCCAAACGTTTATGTGGTGGGGATGCTTGTCGGTGATTGG 1759
||||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||
Sbjct 1212 TATGGGACGAGACTGTTACCTCCTAACGTTTGTGTGGTGGGGATGCTTGTTGGTGATTGG 1271
Query 1760 ACTAGCTTCAAGTGTTGTCTTGTTTCTGAGAACCAGACGAGCCTATCAACGTTTTGAACA 1819
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1272 ACTAGCTTCAAGTGTTGTCTTGTTTCTGAGAACTAGACGAGCCTATCAACGTTTTGAACA 1331
Query 1820 AGATCGGATAACTTCCAGCATGCTCTATTCTTAG 1853
|||| |||||||||| ||||||||||||||||||
Sbjct 1332 AGATAGGATAACTTCAAGCATGCTCTATTCTTAG 1365
Score = 156 bits (84), Expect = 7e-37
Identities = 92/96 (96%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 1421 TGCTCTTTTACCAACCACAATTGCTCTTTTCTTGTTGGCATCATCAGGAAGCTTGGCAGC 1480
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 1056 TGCTCTTTTACCAACCACAATTGCTCTATACTTGTTGCCATCATCAGGAAGCTTGGCAGC 1115
Query 1481 GTTACAAGCAGGAACTGCTCTAATCGGTCTAAGTTC 1516
||||||||||||||| ||||||||||||||||||||
Sbjct 1116 GTTACAAGCAGGAACAGCTCTAATCGGTCTAAGTTC 1151
> Ahg948474 jgi|Araly1|948474|scaffold_800361.1
Length=360
Score = 551 bits (298), Expect = 7e-156
Identities = 322/333 (97%), Gaps = 3/333 (1%)
Strand=Plus/Plus
Query 121 AAACACGGTG-GTCG-AAAAAGATGGCGGGACAATCACGAAAATGGATGATTCTGGTAGC 178
|||||||||| | | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AAACACGGTGAG-GGAAAAAAGATGGCGGGACAATCACGAAAATGGATGATTCTCGTAGC 59
Query 179 GACGATTTGGATTCAAGCATTCACCGGTACGAATTTCGATTTCTCGACGTATTCGTCGAA 238
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 GACGATCTGGATTCAAGCATTCACCGGTACGAATTTCGATTTCTCGACGTACTCGTCGAA 119
Query 239 TTTGAAATCGGTTCTAGGGATTTCGCAAGTACAATTGAATTATCTCGCCGTCGCTTCGGA 298
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TTTGAAATCGGTTCTAGGGATTTCGCAAGTACAATTGAATTATCTCGCCGTTGCTTCGGA 179
Query 299 TCTTGGTAAAGTTTTCGGTTGGTCATCGGGACTTGCACTCTTGTATTTCCCTCTTTGGAC 358
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TCTTGGGAAAGTTTTCGGTTGGTCATCGGGACTTGCACTTTTGTATTTCCCTCTTTGGAC 239
Query 359 GGTTCTTTTCGCGGCGGCGATTATGGGTTTCGTTGGTTATGGTGTTCAATGGCTCGTCAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGTTCTTTTCGCGGCGGCGATTATGGGTTTCGTTGGTTATGGTGTTCAATGGCTCGTCAT 299
Query 419 CACTAACGTCATCTCTTTGCCTTATATTCTGGT 451
||||||||| |||||||||||||||||||||||
Sbjct 300 CACTAACGTTATCTCTTTGCCTTATATTCTGGT 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72295285010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5