BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G45380.1

Length=2526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494441 jgi|Araly1|494441|fgenesh2_kg.8__257__AT5G45380.1         2274    0.0  


> Ahg494441 jgi|Araly1|494441|fgenesh2_kg.8__257__AT5G45380.1
Length=2443

 Score = 2274 bits (1231),  Expect = 0.0
 Identities = 1406/1488 (94%), Gaps = 22/1488 (1%)
 Strand=Plus/Plus

Query  65    TTCCTTTGTTTGCTAAATCAAGATTCTTTC-AAGTTGAAGATTCTTTC---TA---A-TA  116
             ||| ||| |||||||||||||||||||||| ||  |||||||||||||   ||   | ||
Sbjct  10    TTCTTTTTTTTGCTAAATCAAGATTCTTTCTAA-CTGAAGATTCTTTCTATTAGCTATTA  68

Query  117   G-TATATACAAGAGGGAAGAATCTTTCAACTATCACTCCCTACAAATTCCATGAGAAAAT  175
             | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  69    GTTTTATACAAGAGGGAAGAATCTTTCAACTATCACTCCCTACAAATTCCATGAGAAAAT  128

Query  176   TCACTTTTCCAATCAAAAC-----GTA-AAGAAGAAG-AG--GAAGAATGGCTACATGTC  226
             |||||||||| || |||||     | | ||||||||| ||  |||||||||| |||||||
Sbjct  129   TCACTTTTCCGATAAAAACTTAAAGAAGAAGAAGAAGAAGAAGAAGAATGGCCACATGTC  188

Query  227   CTCCTTTCGATTTCTCGACCAAATATTACGATGGTGA---CGGCGGATGCCAGAGGCAGA  283
             ||||||||||||||||| ||||||||||||| |||||   ||||||||||||||||||||
Sbjct  189   CTCCTTTCGATTTCTCGGCCAAATATTACGACGGTGACGGCGGCGGATGCCAGAGGCAGA  248

Query  284   GCAGCTTCTTCGGAGGCACGACGGTGCTCGATCAAGGCGTTGGCTACGCCGTGATTCTTG  343
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  249   GCAGCTTCTTCGGAGGCACGACGGTGCTCGATCAAGGCGTTGGCTACGCCGTTATTCTTG  308

Query  344   GTTTTGGTGCTTTCTTTGCCGTCTTCACATCTTTTTTGGTATGGTTAGAAAAACGATATG  403
             |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct  309   GTTTTGGTGCTTTCTTTGCCATCTTCACATCTTTTTTGGTATGGCTAGAAAAACGATATG  368

Query  404   TGGGAGCTCGTCATACATCGGAATGGTTCAATACAGCGGGAAGAAACGTTAAGACAGGAC  463
             |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct  369   TGGGAGCTCGTCATACCTCGGAATGGTTCAATACAGCTGGAAGAAACGTTAAGACAGGAC  428

Query  464   TTATTGCAAGTGTCATTGTATCACAGTGGACATGGGCTGCGACCATACTGCAAAGTTCAA  523
             | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  429   TCATTGCAAGTGTCATTGTGTCACAGTGGACATGGGCTGCGACCATACTGCAAAGTTCAA  488

Query  524   ACGTAGCATGGCAGTATGGGGTTAGTGGACCGTTTTGGTACGCTAGTGGAGCCACCATAC  583
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  489   ACGTAGCATGGCAGTATGGGGTTAGTGGACCGTTTTGGTACGCTAGTGGAGCCACCATTC  548

Query  584   AGGTGCTGTTGTTTGGTGTGATGGCGATTGAGATAAAAAGAAAGGCTCCTAATGCTCACA  643
             |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct  549   AGGTGCTGTTGTTTGGTGTGATGGCGATTGAGATTAAAAGAAAGGCTCCCAATGCTCACA  608

Query  644   CGGTCTGCGAAATCGTGAAGGCTCGTTGGGGAACCGCAACACATATAGTGTTTTTGGTGT  703
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  609   CGGTCTGCGAAATCGTGAAGGCTCGTTGGGGAACCGCAACACATATAGTATTTTTGGTGT  668

Query  704   TTTGTTTGGCGACAAACGTCGTTGTGACGGCGATGCTCTTGCTCGGCGGCTCTGCTGTGG  763
             |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct  669   TTTGTTTGGCGACAAACGTCATTGTGACGGCGATGCTCTTGCTCGGTGGCTCGGCTGTGG  728

Query  764   TGAATGCTCTAACCGGAGTGAATCTATACGCCGCAAGCTTTCTCATTCCTCTCGGCGTCG  823
             |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || |
Sbjct  729   TGAATGCTCTTACCGGAGTGAATCTATACGCTGCAAGCTTTCTTATTCCTCTCGGTGTTG  788

Query  824   TTGTCTATACTTTGGCTGGAGGACTTAAAGCTACTTTCCTCGCAAGCTACGTTCACTCCG  883
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  789   TTGTCTATACTTTGGCCGGAGGACTTAAAGCTACTTTCCTCGCAAGCTACGTTCACTCCG  848

Query  884   TTATAGTTCACGTGGCTCTAGTCGTCTTTGTGTTTCTGGTCTACACATCGAGTAAAGAGC  943
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  849   TTATAGTTCACGTGGCTCTAGTCGTCTTTGTGTTTCTGGTCTACACATCGAGTAGTGAGC  908

Query  944   TTGGCAGTCCGTCCGTGGTCTATGACCGACTAAAAGATATGGTCGCTAAGTCAAGGTCAT  1003
             |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  909   TTGGGAGTCCGTCCGTGGTCTATGACCGACTAAGAGATATGGTCGCTAAGTCAAGGTCAT  968

Query  1004  GCACTGAGCCACTCTCGCACCACGGTCAAGCTTGTGGTCCGGTTGATGGCAACTTTAGAG  1063
             |||| ||||| ||||||||||||| ||||||||| |||||||| ||||||||||| ||||
Sbjct  969   GCACCGAGCCGCTCTCGCACCACGATCAAGCTTGCGGTCCGGTGGATGGCAACTTCAGAG  1028

Query  1064  GCTCCTATCTCACCATGTTGAGCTCTGGCGGCGCTGTCTTCGGTCTCATCAACATTGTCG  1123
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1029  GCTCCTATCTCACCATGTTGAGCTCTGGCGGCGCTGTCTTTGGTCTCATCAACATTGTCG  1088

Query  1124  GAAACTTCGGCACTGTCTTCGTAGATAATGGTTATTGGGTGAGTGCAATAGCTGCTCGGC  1183
             ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  1089  GAAACTTCGGCACTGTCTTCGTAGACAATGGTTATTGGGTGAGTGCAATAGCTGCTCGAC  1148

Query  1184  CTTCGTCGACCCACAAAGGGTATTTGCTTGGTGGACTCGTGTGGTTCGCTGTACCGTTCT  1243
             |||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1149  CTTCATCAACCCACAAAGGGTATTTGCTTGGTGGACTCGTGTGGTTCGCTGTACCTTTCT  1208

Query  1244  CTCTAGCTACCTCGTTAGGTCTCGGCGCACTAGCCCTTGACTTGCCTATATCTAAGGACG  1303
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1209  CTCTAGCTACCTCGTTAGGTCTCGGCGCACTAGCCCTTGACTTGCCTATATCTAAGGATG  1268

Query  1304  AGGCTGACCGAGGTTTGGTTCCACCTGCCACAGCCATTGCTCTCATGGGTAAATCAGGAT  1363
             |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1269  AGGCTGACAGAGGTTTGGTTCCGCCTGCCACAGCCATTGCTCTCATGGGTAAATCAGGAT  1328

Query  1364  CCTTGCTTCTACTCACTATGCTATTTATGGCTGTAACATCGGCTGGTTCTTCCGAGCTAA  1423
             |||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  1329  CCTTGCTTCTTCTCACTATGCTGTTCATGGCTGTAACATCGGCTGGTTCTTCCGAGCTAA  1388

Query  1424  TTGCAGTCTCATCGCTCTTTACATATGACATCTACCGAACATACATAAACCCTAGAGCAA  1483
             |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct  1389  TTGCAGTCTCATCGCTGTTCACATACGACATCTACCGAACATACATAAACCCTAGAGCAA  1448

Query  1484  CCGGTAGACAAATCTTGAAAATCTCAAGATGCGCTGTTCTTGGATTTG  1531
             |||||| ||||||||||| ||||||||||| ||| ||||| |||||||
Sbjct  1449  CCGGTAAACAAATCTTGAGAATCTCAAGATCCGCGGTTCTCGGATTTG  1496


 Score =  887 bits (480),  Expect = 0.0
 Identities = 603/659 (92%), Gaps = 22/659 (3%)
 Strand=Plus/Plus

Query  1847  GTCTAGTCCGGCCACAGAATTACGATTGGTCGACGACGAGGGAGATCAAAGTAGTGGAAG  1906
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1803  GTCTACTCCGGCCACAGAATTACGATTGGTCGACGACGAGGGAGATCAAAGTAGTGGAAG  1862

Query  1907  C-GTATGCTTCAGGGGACGAAGATGTTGATGTTCCTGCCGAAGAGCTAAGAGAAGAGAAG  1965
             | | |||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct  1863  CCG-ATGCTTCAGGAGACGAAGAAGTTGATGTTCCGGCCGAAGAACTAAGAGAAGAGAAG  1921

Query  1966  CTGAGAAGAGCCAAAGCTTGGATTGTGAAATGGGGTCTTGTCTTCACTATCCTCATTGTT  2025
             || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1922  CTTAGAAGAGCCAAAGCTTGGATTGTGAAATGGGGCCTTGTCTTCACTATCCTCATTGTT  1981

Query  2026  GTCATTTGGCCAGTTCTCTCTCTCCCAGCTCGCGTATTTAGCAGAGGATATTTCTGGTTT  2085
              | |||||||||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct  1982  ATAATTTGGCCAGTTCTCTCTCTCCCAGCACGTGTGTTTAGTAGAGGATATTTCTGGTTT  2041

Query  2086  TGGGCAATTGTGGCAATAGCTTGGGGAACTATAGGATCCATCGTGATCATTGGTTTGCCA  2145
             ||||||||||||||  |||||||||||||||||||||| || ||||| ||||||||||||
Sbjct  2042  TGGGCAATTGTGGCTGTAGCTTGGGGAACTATAGGATCAATTGTGATAATTGGTTTGCCA  2101

Query  2146  TTGGTGGAAAGTTGGGACACGATCAAGAGTGTTTGTATGGGAATGTTCACAAACGATAGG  2205
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  2102  TTGGTCGAAAGTTGGGACACGATCAAGAGTGTTTGTATGGGAATGTTCACAAACGATATG  2161

Query  2206  GTGATGAAAAAGCTTGACGACTTGAACCATAGGCTTCGAGCTTTAACCATGGCTGTGCCA  2265
             || ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  2162  GTAATGAACAAGCTTGATGACTTGAACCATAGGCTTCGAGCTTTAACCATGGCTGTACCA  2221

Query  2266  GAAGCTGAGAAGATATATTTGCTTGAACTTGAGAAGACCAAGAAAAATGATGAAGAAGGT  2325
             |||||||||||||| |||||||||||||||||||||||||||||||  ||||||||| ||
Sbjct  2222  GAAGCTGAGAAGATTTATTTGCTTGAACTTGAGAAGACCAAGAAAACCGATGAAGAACGT  2281

Query  2326  TGAAGAAATATCATATTGGGTACACAAAAGGTT---GATACTCTATTTTTGTTTGTATGC  2382
             ||||||||||| |||||||||||||||||||||   |||||| | ||||||||| |||||
Sbjct  2282  TGAAGAAATATAATATTGGGTACACAAAAGGTTAATGATACTTTCTTTTTGTTTATATGC  2341

Query  2383  TTTGTTTGGTTGTCTTTTCTTGTTAATTTGTGTGAAATCGCATCAAAGCTATCTCCGTTT  2442
             ||||||||||||||||||||||||| |           |  |  || |||||||||||||
Sbjct  2342  TTTGTTTGGTTGTCTTTTCTTGTTA-T-----------C--A--AA-GCTATCTCCGTTT  2384

Query  2443  GTACAATGTGTTCAACATCTTTGATAAGTGTATGTATTATACAAACAACAGACAGTGAA  2501
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  2385  GTATAATGTGTTCAACATCTTTGATAAGTGTATGTATTATACAAACAACAGACTGTGAA  2443


 Score =  381 bits (206),  Expect = 1e-104
 Identities = 237/252 (94%), Gaps = 1/252 (0%)
 Strand=Plus/Plus

Query  1571  CTGGTGTTTCACTTGGATGGATGTATCTCGCAATGGGAGTACTCATTGGTTCTGCGGTCA  1630
             ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  1498  CTGGTGTTTCACTTGGATGGATGTATCTCGC-ATGGGAGTGCTCATTGGTTCTGCGGTCA  1556

Query  1631  TTCCCATTGCTTTCATGCTCTTGTGGAGTAAAGCCAATGCCTTTGGTGCAATTCTTGGAG  1690
             |||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct  1557  TTCCTATAGCTTTCATGCTCTTATGGAGTAAAGCCAATGCCTTTGGTGCAATTCTTGGAT  1616

Query  1691  CGACCTCGGGTTGTGTTTTTGGGATCATTACTTGGCTAACTACCGCAAAGACACAGTACG  1750
             ||||||||||||||||| |||||||||||||||||||  |||||||||||| ||||||||
Sbjct  1617  CGACCTCGGGTTGTGTTCTTGGGATCATTACTTGGCTTTCTACCGCAAAGATACAGTACG  1676

Query  1751  GACGCGTTGATCTTGATAGCACCGGGAAAAATGGCCCTATGTTAGCTGGTAACCTCGTTG  1810
             |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct  1677  GACGCGTTGATCTTGATAGCACTGGGAAAAATGGCCCCATGTTAGCTGGTAACCTCGTCG  1736

Query  1811  CGATTCTAACAG  1822
             | |||||| |||
Sbjct  1737  CTATTCTAGCAG  1748



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 95225612500


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5