BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45380.1 Length=2526 Score E Sequences producing significant alignments: (Bits) Value Ahg494441 jgi|Araly1|494441|fgenesh2_kg.8__257__AT5G45380.1 2274 0.0 > Ahg494441 jgi|Araly1|494441|fgenesh2_kg.8__257__AT5G45380.1 Length=2443 Score = 2274 bits (1231), Expect = 0.0 Identities = 1406/1488 (94%), Gaps = 22/1488 (1%) Strand=Plus/Plus Query 65 TTCCTTTGTTTGCTAAATCAAGATTCTTTC-AAGTTGAAGATTCTTTC---TA---A-TA 116 ||| ||| |||||||||||||||||||||| || ||||||||||||| || | || Sbjct 10 TTCTTTTTTTTGCTAAATCAAGATTCTTTCTAA-CTGAAGATTCTTTCTATTAGCTATTA 68 Query 117 G-TATATACAAGAGGGAAGAATCTTTCAACTATCACTCCCTACAAATTCCATGAGAAAAT 175 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 GTTTTATACAAGAGGGAAGAATCTTTCAACTATCACTCCCTACAAATTCCATGAGAAAAT 128 Query 176 TCACTTTTCCAATCAAAAC-----GTA-AAGAAGAAG-AG--GAAGAATGGCTACATGTC 226 |||||||||| || ||||| | | ||||||||| || |||||||||| ||||||| Sbjct 129 TCACTTTTCCGATAAAAACTTAAAGAAGAAGAAGAAGAAGAAGAAGAATGGCCACATGTC 188 Query 227 CTCCTTTCGATTTCTCGACCAAATATTACGATGGTGA---CGGCGGATGCCAGAGGCAGA 283 ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| Sbjct 189 CTCCTTTCGATTTCTCGGCCAAATATTACGACGGTGACGGCGGCGGATGCCAGAGGCAGA 248 Query 284 GCAGCTTCTTCGGAGGCACGACGGTGCTCGATCAAGGCGTTGGCTACGCCGTGATTCTTG 343 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 249 GCAGCTTCTTCGGAGGCACGACGGTGCTCGATCAAGGCGTTGGCTACGCCGTTATTCTTG 308 Query 344 GTTTTGGTGCTTTCTTTGCCGTCTTCACATCTTTTTTGGTATGGTTAGAAAAACGATATG 403 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 309 GTTTTGGTGCTTTCTTTGCCATCTTCACATCTTTTTTGGTATGGCTAGAAAAACGATATG 368 Query 404 TGGGAGCTCGTCATACATCGGAATGGTTCAATACAGCGGGAAGAAACGTTAAGACAGGAC 463 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 369 TGGGAGCTCGTCATACCTCGGAATGGTTCAATACAGCTGGAAGAAACGTTAAGACAGGAC 428 Query 464 TTATTGCAAGTGTCATTGTATCACAGTGGACATGGGCTGCGACCATACTGCAAAGTTCAA 523 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 429 TCATTGCAAGTGTCATTGTGTCACAGTGGACATGGGCTGCGACCATACTGCAAAGTTCAA 488 Query 524 ACGTAGCATGGCAGTATGGGGTTAGTGGACCGTTTTGGTACGCTAGTGGAGCCACCATAC 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 489 ACGTAGCATGGCAGTATGGGGTTAGTGGACCGTTTTGGTACGCTAGTGGAGCCACCATTC 548 Query 584 AGGTGCTGTTGTTTGGTGTGATGGCGATTGAGATAAAAAGAAAGGCTCCTAATGCTCACA 643 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 549 AGGTGCTGTTGTTTGGTGTGATGGCGATTGAGATTAAAAGAAAGGCTCCCAATGCTCACA 608 Query 644 CGGTCTGCGAAATCGTGAAGGCTCGTTGGGGAACCGCAACACATATAGTGTTTTTGGTGT 703 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 609 CGGTCTGCGAAATCGTGAAGGCTCGTTGGGGAACCGCAACACATATAGTATTTTTGGTGT 668 Query 704 TTTGTTTGGCGACAAACGTCGTTGTGACGGCGATGCTCTTGCTCGGCGGCTCTGCTGTGG 763 |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| Sbjct 669 TTTGTTTGGCGACAAACGTCATTGTGACGGCGATGCTCTTGCTCGGTGGCTCGGCTGTGG 728 Query 764 TGAATGCTCTAACCGGAGTGAATCTATACGCCGCAAGCTTTCTCATTCCTCTCGGCGTCG 823 |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || | Sbjct 729 TGAATGCTCTTACCGGAGTGAATCTATACGCTGCAAGCTTTCTTATTCCTCTCGGTGTTG 788 Query 824 TTGTCTATACTTTGGCTGGAGGACTTAAAGCTACTTTCCTCGCAAGCTACGTTCACTCCG 883 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 TTGTCTATACTTTGGCCGGAGGACTTAAAGCTACTTTCCTCGCAAGCTACGTTCACTCCG 848 Query 884 TTATAGTTCACGTGGCTCTAGTCGTCTTTGTGTTTCTGGTCTACACATCGAGTAAAGAGC 943 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 849 TTATAGTTCACGTGGCTCTAGTCGTCTTTGTGTTTCTGGTCTACACATCGAGTAGTGAGC 908 Query 944 TTGGCAGTCCGTCCGTGGTCTATGACCGACTAAAAGATATGGTCGCTAAGTCAAGGTCAT 1003 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 909 TTGGGAGTCCGTCCGTGGTCTATGACCGACTAAGAGATATGGTCGCTAAGTCAAGGTCAT 968 Query 1004 GCACTGAGCCACTCTCGCACCACGGTCAAGCTTGTGGTCCGGTTGATGGCAACTTTAGAG 1063 |||| ||||| ||||||||||||| ||||||||| |||||||| ||||||||||| |||| Sbjct 969 GCACCGAGCCGCTCTCGCACCACGATCAAGCTTGCGGTCCGGTGGATGGCAACTTCAGAG 1028 Query 1064 GCTCCTATCTCACCATGTTGAGCTCTGGCGGCGCTGTCTTCGGTCTCATCAACATTGTCG 1123 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1029 GCTCCTATCTCACCATGTTGAGCTCTGGCGGCGCTGTCTTTGGTCTCATCAACATTGTCG 1088 Query 1124 GAAACTTCGGCACTGTCTTCGTAGATAATGGTTATTGGGTGAGTGCAATAGCTGCTCGGC 1183 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1089 GAAACTTCGGCACTGTCTTCGTAGACAATGGTTATTGGGTGAGTGCAATAGCTGCTCGAC 1148 Query 1184 CTTCGTCGACCCACAAAGGGTATTTGCTTGGTGGACTCGTGTGGTTCGCTGTACCGTTCT 1243 |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1149 CTTCATCAACCCACAAAGGGTATTTGCTTGGTGGACTCGTGTGGTTCGCTGTACCTTTCT 1208 Query 1244 CTCTAGCTACCTCGTTAGGTCTCGGCGCACTAGCCCTTGACTTGCCTATATCTAAGGACG 1303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1209 CTCTAGCTACCTCGTTAGGTCTCGGCGCACTAGCCCTTGACTTGCCTATATCTAAGGATG 1268 Query 1304 AGGCTGACCGAGGTTTGGTTCCACCTGCCACAGCCATTGCTCTCATGGGTAAATCAGGAT 1363 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1269 AGGCTGACAGAGGTTTGGTTCCGCCTGCCACAGCCATTGCTCTCATGGGTAAATCAGGAT 1328 Query 1364 CCTTGCTTCTACTCACTATGCTATTTATGGCTGTAACATCGGCTGGTTCTTCCGAGCTAA 1423 |||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1329 CCTTGCTTCTTCTCACTATGCTGTTCATGGCTGTAACATCGGCTGGTTCTTCCGAGCTAA 1388 Query 1424 TTGCAGTCTCATCGCTCTTTACATATGACATCTACCGAACATACATAAACCCTAGAGCAA 1483 |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| Sbjct 1389 TTGCAGTCTCATCGCTGTTCACATACGACATCTACCGAACATACATAAACCCTAGAGCAA 1448 Query 1484 CCGGTAGACAAATCTTGAAAATCTCAAGATGCGCTGTTCTTGGATTTG 1531 |||||| ||||||||||| ||||||||||| ||| ||||| ||||||| Sbjct 1449 CCGGTAAACAAATCTTGAGAATCTCAAGATCCGCGGTTCTCGGATTTG 1496 Score = 887 bits (480), Expect = 0.0 Identities = 603/659 (92%), Gaps = 22/659 (3%) Strand=Plus/Plus Query 1847 GTCTAGTCCGGCCACAGAATTACGATTGGTCGACGACGAGGGAGATCAAAGTAGTGGAAG 1906 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1803 GTCTACTCCGGCCACAGAATTACGATTGGTCGACGACGAGGGAGATCAAAGTAGTGGAAG 1862 Query 1907 C-GTATGCTTCAGGGGACGAAGATGTTGATGTTCCTGCCGAAGAGCTAAGAGAAGAGAAG 1965 | | |||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 1863 CCG-ATGCTTCAGGAGACGAAGAAGTTGATGTTCCGGCCGAAGAACTAAGAGAAGAGAAG 1921 Query 1966 CTGAGAAGAGCCAAAGCTTGGATTGTGAAATGGGGTCTTGTCTTCACTATCCTCATTGTT 2025 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1922 CTTAGAAGAGCCAAAGCTTGGATTGTGAAATGGGGCCTTGTCTTCACTATCCTCATTGTT 1981 Query 2026 GTCATTTGGCCAGTTCTCTCTCTCCCAGCTCGCGTATTTAGCAGAGGATATTTCTGGTTT 2085 | |||||||||||||||||||||||||| || || ||||| |||||||||||||||||| Sbjct 1982 ATAATTTGGCCAGTTCTCTCTCTCCCAGCACGTGTGTTTAGTAGAGGATATTTCTGGTTT 2041 Query 2086 TGGGCAATTGTGGCAATAGCTTGGGGAACTATAGGATCCATCGTGATCATTGGTTTGCCA 2145 |||||||||||||| |||||||||||||||||||||| || ||||| |||||||||||| Sbjct 2042 TGGGCAATTGTGGCTGTAGCTTGGGGAACTATAGGATCAATTGTGATAATTGGTTTGCCA 2101 Query 2146 TTGGTGGAAAGTTGGGACACGATCAAGAGTGTTTGTATGGGAATGTTCACAAACGATAGG 2205 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2102 TTGGTCGAAAGTTGGGACACGATCAAGAGTGTTTGTATGGGAATGTTCACAAACGATATG 2161 Query 2206 GTGATGAAAAAGCTTGACGACTTGAACCATAGGCTTCGAGCTTTAACCATGGCTGTGCCA 2265 || ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 2162 GTAATGAACAAGCTTGATGACTTGAACCATAGGCTTCGAGCTTTAACCATGGCTGTACCA 2221 Query 2266 GAAGCTGAGAAGATATATTTGCTTGAACTTGAGAAGACCAAGAAAAATGATGAAGAAGGT 2325 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || Sbjct 2222 GAAGCTGAGAAGATTTATTTGCTTGAACTTGAGAAGACCAAGAAAACCGATGAAGAACGT 2281 Query 2326 TGAAGAAATATCATATTGGGTACACAAAAGGTT---GATACTCTATTTTTGTTTGTATGC 2382 ||||||||||| ||||||||||||||||||||| |||||| | ||||||||| ||||| Sbjct 2282 TGAAGAAATATAATATTGGGTACACAAAAGGTTAATGATACTTTCTTTTTGTTTATATGC 2341 Query 2383 TTTGTTTGGTTGTCTTTTCTTGTTAATTTGTGTGAAATCGCATCAAAGCTATCTCCGTTT 2442 ||||||||||||||||||||||||| | | | || ||||||||||||| Sbjct 2342 TTTGTTTGGTTGTCTTTTCTTGTTA-T-----------C--A--AA-GCTATCTCCGTTT 2384 Query 2443 GTACAATGTGTTCAACATCTTTGATAAGTGTATGTATTATACAAACAACAGACAGTGAA 2501 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2385 GTATAATGTGTTCAACATCTTTGATAAGTGTATGTATTATACAAACAACAGACTGTGAA 2443 Score = 381 bits (206), Expect = 1e-104 Identities = 237/252 (94%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 1571 CTGGTGTTTCACTTGGATGGATGTATCTCGCAATGGGAGTACTCATTGGTTCTGCGGTCA 1630 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1498 CTGGTGTTTCACTTGGATGGATGTATCTCGC-ATGGGAGTGCTCATTGGTTCTGCGGTCA 1556 Query 1631 TTCCCATTGCTTTCATGCTCTTGTGGAGTAAAGCCAATGCCTTTGGTGCAATTCTTGGAG 1690 |||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1557 TTCCTATAGCTTTCATGCTCTTATGGAGTAAAGCCAATGCCTTTGGTGCAATTCTTGGAT 1616 Query 1691 CGACCTCGGGTTGTGTTTTTGGGATCATTACTTGGCTAACTACCGCAAAGACACAGTACG 1750 ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| Sbjct 1617 CGACCTCGGGTTGTGTTCTTGGGATCATTACTTGGCTTTCTACCGCAAAGATACAGTACG 1676 Query 1751 GACGCGTTGATCTTGATAGCACCGGGAAAAATGGCCCTATGTTAGCTGGTAACCTCGTTG 1810 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| | Sbjct 1677 GACGCGTTGATCTTGATAGCACTGGGAAAAATGGCCCCATGTTAGCTGGTAACCTCGTCG 1736 Query 1811 CGATTCTAACAG 1822 | |||||| ||| Sbjct 1737 CTATTCTAGCAG 1748 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95225612500 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5