BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45410.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473354 jgi|Araly1|473354|fgenesh2_kg.1__3308__AT5G45410.3 1823 0.0
> Ahg473354 jgi|Araly1|473354|fgenesh2_kg.1__3308__AT5G45410.3
Length=1261
Score = 1823 bits (987), Expect = 0.0
Identities = 1126/1192 (94%), Gaps = 13/1192 (1%)
Strand=Plus/Plus
Query 93 TGTCCCTTTGCTGCCGAAAGCATAATCCAGAAATGCCCTTTCCTGAGAAACATCAACAAG 152
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TGTCCCTTTGTTGCTGAAAGCATAATCCAGAAATGCCCTTTCCTGAGAAACATCAACAAG 130
Query 153 CCTACCAATTTGTCCTTCTCCTCCTTGAGTTTTCCAATTCCGGTGCAAGGAGGTAAAGGT 212
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 131 CCTACCAATTTGTCCTTCTCCTCCTTGAGTCTTCCAATTCCGGTGCAAGGAGGTAAAGGT 190
Query 213 CCTATTTTTGAAGATGGTCCTGGATTTGATTCAGCATTCAAGCTCTTCCATGGGAAAGAT 272
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 191 CCGATTTTTGAAGATGGTCCTGGATTTGATTCAGCATTCAAGCTTTTCCATGGAAAAGAT 250
Query 273 GGTATTGTGCCGCTTTCTGG---TT-TCG----C-TGATGATTCTGAAGATGAGGCGGGT 323
|||||||||||||||||||| || | | | ||||||| ||||||||||| || |
Sbjct 251 GGTATTGTGCCGCTTTCTGGACATTCTAGTTTCCGAGATGATTTTGAAGATGAGGTGGCT 310
Query 324 CGTCGTG---CTCTGCAATTCAATCCACTTGCTGGTAAGGTAGCTACAATAAGCCTATCA 380
||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 311 CGTCGTGCTCCTCTGCAATTCAATCCACTTGCGGGGAAGGTAGCTACTATAAGCCTATCA 370
Query 381 GCTTTTGGTCCTGGAGGCCCTTTTGGTTTTGGTCCTTTCTCAGAGAAATGGAAGAAACAA 440
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 371 GCTTTTGGTCCTGGAGGGCCTTTTGGCTTTGGTCCTTTCTCTGAGAAATGGAAGAAACAA 430
Query 441 CAGAAGAAACCTAAACCTTCCAAAAACCAACAGTCTGGGGACTCTTCGAAACATGAGGCA 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 CAGAAGAAACCTAAACCTTCCAAAAACCAACAGTCTGGGGACTCTTCGAAACATGAGGCA 490
Query 501 GTTGGAGACGAATGGTTAAAAACCGGGAATTGTCCTATCGCCAAGTCTTTTAGAGCTGCA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GTTGGAGACGAATGGTTAAAAACCGGGAATTGTCCTATCGCCAAGTCTTTTAGAGCTGCA 550
Query 561 AGCAAAGTCATGCCTCTTATTTCTAAAGCATTAACGCTACCACCTGGTATGAAATATAGA 620
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 551 AGCAAAGTCATGCCTCTTGTTTCTAAAGCATTAACGCTACCATCTGGTATGAAATATAGA 610
Query 621 TGTCCAGCTCCTATAGTAGCTGCTAGAGCTGCACTTTCGAAGACTGCTTTGGTCAAAAGT 680
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 611 TGTCCAGCTCCTATAGTAGCTGCAAGAGCTGCACTTTCAAAGACTGCTTTGGTTAAAAGT 670
Query 681 CTTCGCCCTCAGCCTTTACCTGAAAAGATGCTTGCAATCGCTCTCATGGGAATGGCTGCA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 CTTCGCCCTCAGCCTTTACCTGAAAAGATGCTTGCAATCGCTCTCATGGGAATGGCTGCA 730
Query 741 AATGTGCCTCTAGGTGTATGGAGAGAACACACAAAGAAGTTTTCGCCTGCATGGTTTTTG 800
||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 731 AATGTGCCTCTTGGTGTATGGAGAGAACACACCAAGAAGTTTTCGCCTTCATGGTTTGTG 790
Query 801 GCTGTCCATGCTGCTGTGCCTTTTATAGCAATGCTTAGGAAATCTGTTCTGATGCCCAAA 860
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 791 GCGGTCCATGCTGCTGTGCCTTTTATAGCAATGCTTAGGAAATCTGTACTGATGCCGAAA 850
Query 861 ACAGCCATGGCTTTGACCATTGGAGCTTCGATCTTGGGACAGGTGATTGGGTCAAGAGCT 920
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 851 ACAGCCATGGCTTTGACCATTGGAGCTTCGATTTTAGGACAGGTGATTGGGTCAAGAGCT 910
Query 921 GAGCGTTACCGTCTCAAAGCAGTAGCTGAGAAAATGGTTCCTGTAACCGCTATGGTTTCT 980
|||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 911 GAGCGTTACCGTCTCAGAGCAGTGGCTGAGAAAATGGTTACTGAAACCGCTATGGTTTCT 970
Query 981 GGATACAACCAGAGCCCTGGCGACTCAGGCATTTCTGGGGGACATTGTGGTATAGGGGAG 1040
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 971 GAATACAACCAGAGCCCTGGCGACTCAGGCATTTCTGGGGGACATTGTGGTACAGGAGAG 1030
Query 1041 GGAGTGAAGCAGGTTTATTACAATGTAAATATTGGAGAGTCTGCTAAATCAACTGGACTC 1100
||||||||| ||||||||| |||||||||| ||||||| |||||||||||||||||||||
Sbjct 1031 GGAGTGAAGGAGGTTTATTTCAATGTAAATGTTGGAGAATCTGCTAAATCAACTGGACTC 1090
Query 1101 TGTTATTGAGAGAATGTTCTTATTGATTTCAGAAACTACAAATTACTATGTAAGGATTGG 1160
|||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1091 TGTTATTGAGAGAAAGTTCTTATTGATTCCAAAAACTACAAATTACTATGTAAGGATTGG 1150
Query 1161 ATATTTGTGTGTGAGGGAAGGTTTTTGTAATTCAGTGAATTGTGTAAACCATAACAATGG 1220
|| |||||||| |||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 1151 ATGTTTGTGTGAGAGGGAAGGTTTCTGTAATTCAGTGAATTGTGTAAACCAAAACAGTGG 1210
Query 1221 TGTCGTTTTATCCCTTCAAAATGGGTCTAAATAAAAGGTTAATAATTCCCTC 1272
|||||||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct 1211 TGTCGTTTTATCCCTTTTAA-TGGGTCTAAATAAAAGTTTAATAATTCCCTC 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5