BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45510.1
Length=4185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494432 jgi|Araly1|494432|fgenesh2_kg.8__248__AT5G45510.1 2447 0.0
Ahg915561 jgi|Araly1|915561|Al_scaffold_0008_312 545 7e-154
> Ahg494432 jgi|Araly1|494432|fgenesh2_kg.8__248__AT5G45510.1
Length=4102
Score = 2447 bits (1325), Expect = 0.0
Identities = 1830/2056 (89%), Gaps = 105/2056 (5%)
Strand=Plus/Plus
Query 38 agagaaagtgagagagagagagagagaTAAAGCAGAGGTTGAC-TTCGCTTTGCTGAGAA 96
||| |||| |||||| || |||||||| |||||||| |||||| ||| |||||| |||||
Sbjct 16 AGA-AAAGGGAGAGATAGTGAGAGAGACAAAGCAGAAGTTGACTTTC-CTTTGCGGAGAA 73
Query 97 GGCAAAGAGCTCGA-A-AGAGAGAAGACTAACTCTCATCAGCGACGAATGTCTGATCCGT 154
|||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 74 GGCAAAGAGCTCGAGAGAGAGAGAAGACTAACTCTCATCAGCGACGAATATCTGATCCCT 133
Query 155 TGAAGATGGCGGCCGAGACGGAGGAGATTAAACCAGTTCCAGCAGCAATGGGAGAAAAGA 214
|||||||||| | ||||||| ||||||| | | | | | |||||| |
Sbjct 134 TGAAGATGGC-G--GAGACGGTGGAGATT--A--A-----A-C--C------AGAAAACA 172
Query 215 AGGATGTGGTGTTGTGTAAGAAGATAGTGGAAACTCTGGGAGGAGGTGGTGATCAAAGAG 274
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 173 AGGATGTGATGTTGTGTAAGAAGATAGTGGAAACTCTGGGAGGAAATGGTGATCAAAGAG 232
Query 275 TATTGCTGGTTGGCGAAGCTGGGATCGGGAAGACAAGGATGGCACAAATGGTTGACAAAG 334
||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 233 TATTGTTGGTTGGCAAAGCTGGAATCGGGAAGACAAGGATGGCACAAATGGTAGACAAAG 292
Query 335 AAGCCT-CTAAGGATGTTCTT-TGCTACCAGACTCTCTGGTTGCATCTCAACAGGAAGTT 392
||| || ||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 293 AAG-CTGCTAAGGACG-ACTTGTGCTACCAGACTCTCTGGTTGCATCTCAACAGGAAGTT 350
Query 393 TAAAGTCAACGACAACTAT-ATCAAGGAGAAGAAGTTTGAAGACGAATGGTCTCTTTATG 451
||||||||||||||| ||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct 351 TAAAGTCAACGACAAGTATGA-CAAGGAGAAGAAGTTTGAAGATGAATGGTCTCTTTATG 409
Query 452 AGAACATAGCTTCACAGCTATCTTTATACTCTGATTTtgaagagactgaagtcggtgaaa 511
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 410 AGAACATAGCTTCACAACTATCTTTATATTCTGATTTTGAAGAGACTGAAGTCGGTGAAA 469
Query 512 gagatgaagatgaggaagaggagaagaaggttgaagaTTTGCTCAAGGATTTGAAGCCCA 571
|||||||||||||||| || ||||||||||||||||||||||| |||||||||||| | |
Sbjct 470 GAGATGAAGATGAGGAGGAAGAGAAGAAGGTTGAAGATTTGCTTAAGGATTTGAAGGCTA 529
Query 572 AGATTGAGAAGTATCTCTTggaaaagaaggaagccgtcgtgaaaaaattggaggatgaca 631
|||||||||| |||||||||||||||||| ||||||| | | ||||||||||||| ||||
Sbjct 530 AGATTGAGAAATATCTCTTGGAAAAGAAGAAAGCCGTTGAGGAAAAATTGGAGGAGGACA 589
Query 632 agaagaagaaggagaaggaagCCGCAGAGAAACTGGAGGCTGAGAAAAAACTGGTGGATC 691
||||||||||| ||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 590 AGAAGAAGAAGTTGAAGGAAGCCGCAGATAAATTGGAGGCTGAGAGAAAACTGGTGGATC 649
Query 692 CGGC-TGCGAAAAAAGCAAAAGA-CCATGGA-AACAAGAATCCAACCGATGCCGCAAAGG 748
| || |||||| ||||| ||||| || | || || ||||||||||| ||||||| ||||
Sbjct 650 C-GCATGCGAAGAAAGCTAAAGATCC-T-GAGAAGAAGAATCCAACGGATGCCGGGAAGG 706
Query 749 AGAAAACGACTCAAGTAGTAGCCGGAGGAGAGGATAAAGCTCAGACATCATCTGAAAGAA 808
||||||||||| |||||||||||||| | || | | | ||||||||||||||||
Sbjct 707 AGAAAACGACTGAAGTAGTAGCCGGA-G-GA-G----A--T---ACATCATCTGAAAGAA 754
Query 809 AGCCGTATCTTCTTTTGATTCTTGACGATGAAGGAATGACCAGTGAGTACGAGGTGATGG 868
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 AGCCGTATCTTCTTTTAATTCTTGACGATGAAGGAATGACCAGTGAGTACGAGGTGATGG 814
Query 869 TGCATTTAGGCCTTGAGGATTTTCTGAAAGATCACACACCTCGAAAAATCCTTATTACAA 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGCATTTAGGCCTTGAGGATTTTCTGAAAGATCACACACCTCGAAAAATCCTTATTACAA 874
Query 929 GAAGACAAGAAACTGAGGAGGCTACAAAATCTGGTGAGCATG-CTGAGGGGGAGGCAAAT 987
||||||| |||| |||||||| |||||||||||||||| | | ||||||||| | ||
Sbjct 875 GAAGACAGGAAAATGAGGAGGATACAAAATCTGGTGAG-AAGATTGAGGGGGA---AGAT 930
Query 988 GATTCGCAATCCGGGGAAAAGAAAGAGGACACAGATGGTGAAGACGAAATTAGATCA--- 1044
|||||||| |||| |||||||||||| || || |||||||||||||||| || ||||
Sbjct 931 GATTCGCATTCCGCGGAAAAGAAAGATGAAACCGATGGTGAAGACGAAAATAAATCACGT 990
Query 1045 G---CTG-----AT--A--AGGAGGAACCTGAGTCTCAAGCCCGGGTCAAAACAGAGGAG 1092
| | | || | |||||| |||||||||||| |||| | |||| ||||||||
Sbjct 991 GACACCGACACAATCAATGAGGAGGTACCTGAGTCTCATGCCCAGATCAAGGCAGAGGAG 1050
Query 1093 AAACATGAAAAAGTTGTACCTCCTACCATAGATGACTTATGGGG-GAGCACAAACACTTA 1151
|||| | | ||||||||||||||||||||||||| | |||||||||||||
Sbjct 1051 AAAC-------CG--G---CTCCTACCATAGATGACTTATGGGGTG-GCACAAACACTTA 1097
Query 1152 TGGTGAAATTACGTTCCAGACCACAAATGAGTCACAAGATTTACTTGAATCATTCAACCT 1211
||| |||||||||||| | | |||||| ||||| |||| |||||||||||| |||||
Sbjct 1098 TGGCGAAATTACGTTCAATAACACAAACGAGTCGCAAGCTTTACTTGAATCCTTCAA-AG 1156
Query 1212 A-AAGGAGGCAGAGGCTTTATTTACTTCG-TCCATGTTTTTCAAGGATATGCCAAATTTT 1269
| |||||||| |||| |||||||| | |||| ||||||||| ||||||| ||||
Sbjct 1157 ACAAGGAGGCGGAGGATTTATTTA----GATCCA---TTTTCAAGGGTATGCCAGATTTC 1209
Query 1270 TTCTTTGACCCCGTTCCTGGGACTGATGAGA-AACTGTTAAACCACA-TGCTGAAAAAGA 1327
||| ||| ||||||| |||||||||||| | || || | ||| | || |||||||||
Sbjct 1210 TTCGTTGTCCCCGTTGATGGGACTGATGACATAA-TG-T--CCCA-AGTGTTGAAAAAGA 1264
Query 1328 GCAAGAGTTTGCCAGCTGCAATCAACGTGCTCGCCAAGTCCCTAGAGTACACTGTCAAGA 1387
|||||| |||||||||||||||| ||||| | ||||||||||||||||||||| ||||
Sbjct 1265 GCAAGAATTTGCCAGCTGCAATCGTTGTGCTAGGCAAGTCCCTAGAGTACACTGTTAAGA 1324
Query 1388 GCAAGTCCTATAAGCTTAATAAGGACGA-AGAAGAGAGGTTACTAAAAGAAAAGATAGAA 1446
||||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 1325 GCAAGTCCTATGAGCTTAATAAGGA-AACAGAAGAGAAGTTACTAAAAGAAAAGATAGAA 1383
Query 1447 ATGGTTCTCTCGGCTGAGCGGGGTAATCCATCCGA-CCAGGAATCTAGTTCTGAGAGCCC 1505
|||||||||||||||||||||| | ||| ||| | ||| ||||||||||||||||||||
Sbjct 1384 ATGGTTCTCTCGGCTGAGCGGGATGTTCCGTCCAATCCA-GAATCTAGTTCTGAGAGCCC 1442
Query 1506 TAAGAAAGCAAGTGGAGAAAATCCAATCCTGCTTCTTGCATACAAGCTGTTCAAAACCGA 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TAAGAAAGCAAGTGGAGAAAATCCAATCCTGCTTCTTGCATACAAGCTGTTCAAAACCGA 1502
Query 1566 TGGTCCATTGAAGGATACAATATTGGATTGTTTTTGGCATAGCTTGGACTTCTTTGAGCA 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TGGTCCATTGAAGGATACAATATTGGATTGTTTTTGGCATAGCTTGGACTTCTTTGAGCA 1562
Query 1626 TTGTGGCTGTGTTTACTACCGTGACCTGATCACACAATGGATACTTGAAGGCTACTTTGA 1685
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1563 TTGTGGCTGTGTTTACTACCGTGACCTGATCACACAATGGATTCTTGAAGGCTACTTTGA 1622
Query 1686 TCCTGTTAGGTCTGTCGAAAAGGCGTACCAGGATGGTCATTCTATCTTCATGGAGCTTAT 1745
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1623 TCCTGTTAGGTCTGTCGAAAAGGCGTACCAAGACGGTCATTCTATCTTCATGGAGCTTAT 1682
Query 1746 AGACCGCGGAATGCTGAAGATACAAGAAAACAATGTGGTAGTACCAGAGATGGCGATGAG 1805
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1683 AGACCGCGGAATGCTGAAGATACAAGAAAACAATGTGGTGGTACCAGAGATGGTGATGAG 1742
Query 1806 AAATGTAATTGATCCTCGACGTGGTGGGCATTTAGGGAAATCTCGGCTTGGATTTTCTAG 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 AAATGTAATTGATCCTCGACGTGGTGGGCATTTAGGGAAATCTCGGCTTGGATTTTCTAG 1802
Query 1866 AGTCTATGGTGGTAACAAGAGAAAAGGAATAGGGAAAATCACCCAACTTGATGATATGAT 1925
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1803 AGTCTATGGTGGTAACAAGAAAAAAGGTATAGGGAAAATCACCCAACTTGATGATATGAT 1862
Query 1926 TAAAACAGTGCAAGCAAAGAAAGGAGACAAGATTACCACGATTCTGGTTAGTGGAGATCG 1985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 TAAAACAGTGCAAGCAAAGAAAGGAGACAAGATTACCACGATTCTGGTTAGTGGAGATCG 1922
Query 1986 TCTGCGTCGCGTAACTCCTAAAAAGTTCTTCAAGAATCTGAAAGAGCTTGAAGTACTTGG 2045
|||||| || | ||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1923 TCTGCGCCGTGAAACTCCTGCAAAGTTCTTTAAGAAGCTGAAAGAGCTTGAAGTACTTGG 1982
Query 2046 CCTTTTTGAGCCCACA 2061
|||||||| ||||||
Sbjct 1983 TCTTTTTGAACCCACA 1998
Score = 2316 bits (1254), Expect = 0.0
Identities = 1551/1692 (92%), Gaps = 29/1692 (2%)
Strand=Plus/Plus
Query 2072 TTGTCCCGTCTTTTTCAGATCAGCTCAAACTCCTCCGGGTTCTTATAATCAGGGACTGTG 2131
|||||||| ||||| ||||||| ||||||||||| ||||||||| | |||||||||||||
Sbjct 2063 TTGTCCCGCCTTTTACAGATCATCTCAAACTCCTTCGGGTTCTTGTGATCAGGGACTGTG 2122
Query 2132 ATCTCCTGAAAAGCATTGAAGAGCTTAAGGCTCTTACAAAGCTAAATACTCTTGAAGTTT 2191
| || |||||| | || || |||||||||| |||||||||||||||| ||||||||||||
Sbjct 2123 ACCTACTGAAAGGTATAGAGGAGCTTAAGGTTCTTACAAAGCTAAATGCTCTTGAAGTTT 2182
Query 2192 CTGGTGCTAGCTCCCTG-AGCAAAATATCTGAAAAATTCTTTGAGTCATTTCCTGAACTC 2250
||||||||||||||||| || ||||| ||||| | |||||| ||||||||| |||||||
Sbjct 2183 CTGGTGCTAGCTCCCTGAAG-AAAATCTCTGACGACTTCTTTAAGTCATTTCTTGAACTC 2241
Query 2251 CGAAGTCTTCACCTCTCTGGGCTTAAGATCGAGTCTTCCCCTCCCAGTATTTCTGGCCTG 2310
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 2242 CGAAGTCTTCACCTCTCTGGGCTTAAGATCAAGTCTTCCCCTCCCAGTATTTCTGACCTG 2301
Query 2311 AAGGAACTTCACTGTCTCATCATCAAAGACTGCCCTTTATTGCAAGATCTGCCAAACATA 2370
|||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 2302 AAGGAACTTCACTGTCTCATCATCAAGGACTGCCCTTTATTGGAAGATTTGCCAAACATA 2361
Query 2371 CAAGAACTAGTAAATCTTGAGGTTGTTGATGTTTCTGGTGCTAGTGGGCTTCGAACTTGT 2430
|| |||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2362 CAGGAACTACTAAATCTCGAGGTTGTTGATATTTCTGGTGCTCGTGGGCTTCGAACTTGT 2421
Query 2431 TTCGACAACGCAGATGGTGCCAAGaaaaacaagagcaaaaacaaaaaCTTTTATCTTCTT 2490
|||||||||||| | | || |||||||||||| |||||||||||||||||||||||||||
Sbjct 2422 TTCGACAACGCAAAAGATGGCAAGAAAAACAAAAGCAAAAACAAAAACTTTTATCTTCTT 2481
Query 2491 ACAAAACTTCAGCATCTTGACTTCTCGGGGAGCCAAATAGAGCGACTGCCAATATTCCAG 2550
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2482 ACAAAACTTCAGCTTCTTGACTTCTCCGGGAGCCAAATAGAGCGACTGCCAATATTCCAG 2541
Query 2551 GATTCTGCGGTGGCCGCCAAGCTTCACTCCTTGACTCGGCTCTTGTTGCGCAACTGTAGC 2610
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2542 GACTCTGCGGTGGCCGCCAAGCTTCACTCCTTGACTCGGCTCTTGTTGCGCAACTGTAGC 2601
Query 2611 AAATTGAGAAGGTTGCCTAGTTTGAAGCCCTTGTCAGGACTTCAAATTCTTGATCTTTCT 2670
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2602 AAATTGAGAAGGTTGCCTAGTTTGAAGCCCTTGTCAGGACTCCAAATTCTTGATCTCTCT 2661
Query 2671 GGCACTACGAGCTTAGTGGAAATGCTTGAAGTGTGCTTCGAGGATAAGCTTGAACTCAAA 2730
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2662 GGCACTACCAGCTTAGTGGAAATGCTTGAAGTGTGCTTCGAGGATAAGCATGAACTCAAA 2721
Query 2731 ACTCTTAATCTCTCGGGAACTAATCTTAGCGAGTTGGCTACCACCATCGAGGACCTGTCC 2790
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2722 ACTCTTGATCTCTCGGGAACTAATCTTAGCGAGTTGGCTACCACCATCGAGGAGCTGTCC 2781
Query 2791 AGTCTCAACGAACTCCTCCTACGTGATTGCATCAACCTAGATGCCATCCCAAACATCGAG 2850
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 2782 AGTCTCAACGAACTTCTCCTACGTGATTGCATCAACCTAGATGCTATCCCAAACATCCAG 2841
Query 2851 AAACTAGAAAATCTCGAAGTCATTGATGTTTCCGGCAGTGCCAAGCTGGCAAAGATTGAG 2910
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2842 AAACTCGAAAATCTCGAAGTCATTGATGTTTCCGGCAGTGCCAAGCTGGCGAAGATTGAG 2901
Query 2911 GGATCATTTGAGAAAATGTTTTACCTACGTGTAGTGGATCTGTCTGGAACCCAAGTGGAG 2970
|||||||||||||| |||| ||||||||||| |||| |||| | ||||||| ||||||||
Sbjct 2902 GGATCATTTGAGAATATGTATTACCTACGTGAAGTGAATCTCTTTGGAACCAAAGTGGAG 2961
Query 2971 ACACCAGAGTTGCCAGCGGATACCAAAATCCATTGTCTGAAGCGTTTTACTCGGGCAGAT 3030
||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||
Sbjct 2962 ACACCAGAGTTGCCAAATGAGACCAAAATCCATTGTGTGAAGCGTTTTACCCGGGCAGAT 3021
Query 3031 GGAAAATGTTTTGAACGTGACACATGGAG-AGAAATAAAGGAAGACATTGAACGTGATAG 3089
||||| |||||| || ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 3022 GGAAAGTGTTTTAAAGGTGACACATGGAGCA-AAATAAAGGAAGACATTGAACGTGATAG 3080
Query 3090 GTCTGAGAATGCCAGCTCCTCTGATGCAGTTGTT-ATATCTCAAGAAAT-CACAGAAAAG 3147
|||||||||||||||||||||||||||||||||| | ||| ||||| || | |||| |
Sbjct 3081 GTCTGAGAATGCCAGCTCCTCTGATGCAGTTGTTGA-ATCCCAAGAGATTCT-AGAAGA- 3137
Query 3148 AAGCCTGTAGAAATAAGAGAGGTTGAATC-GAATGCACCTCGCGCCAGTGATTGTACCGA 3206
|| | | || |||| || |||| || || |||||||||||||||| |||| ||
Sbjct 3138 AA-CA-G--GA-----GAGA--TTCAATCAGA-TGAACCTCGCGCCAGTGATCGTACTGA 3185
Query 3207 GAAAGTAGATGTCAACAAGGAACGTCTTCTTAAAGTCCCCATAGATAGGGCTCTATATCA 3266
||| | |||||||| ||||||||||||||| |||||||||| ||| |||||||||||| |
Sbjct 3186 GAAGGGAGATGTCAGCAAGGAACGTCTTCTCAAAGTCCCCAAAGAGAGGGCTCTATATAA 3245
Query 3267 GAAGGCACTAACATCACTTGTTGATTCCAAAATTCCACAAGAAGAAGTCTTGGAGATCAA 3326
|||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 3246 GAAGACACTATCATCACTTGTTGATTCCGAAATTCCACAAGAAG---TCTTGGAGATCAA 3302
Query 3327 TGAAACTAATAAGCTAGATGAGGAAGCACTAGCTAGTGCTGAGTTTGTGTCTTTTGTGGA 3386
|||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 3303 TGAAACTAATGAGCTAGATAAGGACGCACTAGCTAATGCTGAGTTTGTGTCTTTTGTGGA 3362
Query 3387 CTGTACTCCTGAAAGGGTCAAATCTATCTTTGA-GAAGGCCAAATTGGTGAAGGGTTGCT 3445
|||||||||||||||| ||| |||||||||| | || | |||||| |||||||||||||
Sbjct 3363 CTGTACTCCTGAAAGGCTCACATCTATCTTTAACGA-GACCAAATCAGTGAAGGGTTGCT 3421
Query 3446 GGCTAAGGATGTGCTTTGACATAAAAGACCCTTTCGATGGTGTGGATGAGGAGA-ACTTG 3504
|||||||||||||||||||||||||| | | ||||| ||||||||||||||| | |||||
Sbjct 3422 GGCTAAGGATGTGCTTTGACATAAAAAATCTTTTCGCTGGTGTGGATGAGGA-ACACTTG 3480
Query 3505 AAATCACTGGAGACTTTATCGATTACAAACCTTCTCTCATTGGAGACTATAAGCTTTATT 3564
|| |||||||||||||| ||||||||||||||||| || |||||||||||||||| | |
Sbjct 3481 AAGTCACTGGAGACTTTGTCGATTACAAACCTTCTATCGTTGGAGACTATAAGCTCTGTC 3540
Query 3565 GCTAAGTTAGAGAATCTGAAGAACCTAAGCTTAGATTGCTGCCCGAAAATCAAAACGATT 3624
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3541 GGTAAGTTGGAGAATCTGAAGAACCTAAGCTTAGATTGCTGCCCGAAAATCAAAACGATT 3600
Query 3625 TTCCCGGAGATGCCTGCCAGCCTACCAGTCCTGAATTTAAAGCATTGTGAGAACCTGGAG 3684
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3601 TTCCCGGAGATGCCTGCCAGCCTACCAGTCCTGAATTTAAAGCATTGTGAGAATCTGGAG 3660
Query 3685 AAAGTTGTTGTAGGAGTTGAAGTGTCAACTCACACTAATCTGGATTTGAAAGTGGAGAAT 3744
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 3661 AAAGTTGTTGTAGGAGTTGAAGTGTCAACTCACACTAATCTGAATTTGGAAGTGGAGAAT 3720
Query 3745 TGTCCAAAATTC 3756
|| ||||| |||
Sbjct 3721 TGCCCAAAGTTC 3732
Score = 422 bits (228), Expect = 1e-116
Identities = 294/324 (91%), Gaps = 11/324 (3%)
Strand=Plus/Plus
Query 3759 GGACTACGTAATGGTTGACCACAGTGATGTACCTCCACCACATGAATGCTGATCATAAAA 3818
||| ||||| |||||||| | |||||||| ||| |||||||| |||||||||||||||||
Sbjct 3768 GGAATACGTTATGGTTGAGCTCAGTGATGCACCACCACCACAAGAATGCTGATCATAAAA 3827
Query 3819 G-AGGCTGGAGCAAGATCTACTTACACAGTACTAAACATCTGGATCGTTGCCTCTTTAAT 3877
| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3828 GTA-GCTGGAGCAAGATCTACTTACACAGTACTAAACATCTGGATCGTTGCCTCT--AAT 3884
Query 3878 CATTTTCATACTTTTTTCCTACGTGT-GCCTGAAGCTTTGCGTGTTGAATAACGACCGGC 3936
|||| ||||||||||||||| ||||| || |||||||||| |||||||||||| |||||
Sbjct 3885 CATTCTCATACTTTTTTCCTGCGTGTAGC-TGAAGCTTTGTGTGTTGAATAACAACCGG- 3942
Query 3937 ATT-GAAACATT-ATCTTGCGGgttttattttt-actgtttcatgtttctgtttctgttt 3993
||| ||||| || ||||| | |||||| ||||| |||||||||||||| ||||||| |||
Sbjct 3943 ATTTGAAAC-TTCATCTTACCGGTTTTGTTTTTTACTGTTTCATGTTTTTGTTTCTCTTT 4001
Query 3994 taagatattttctgCTGTAAAATCCCAGGCATAGTGTTCTGTTCTTGTCTGGGTGAATAA 4053
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 4002 TAAGATATTTTCTGCTGTGAAATCCCTGGCATGGTGTTCTGTTCTTGTCTGGGTGAATAA 4061
Query 4054 GACCATTGTTTTGATTGTTTTTCT 4077
||||||||||||||||||||||||
Sbjct 4062 GACCATTGTTTTGATTGTTTTTCT 4085
> Ahg915561 jgi|Araly1|915561|Al_scaffold_0008_312
Length=3249
Score = 545 bits (295), Expect = 7e-154
Identities = 991/1310 (76%), Gaps = 115/1310 (9%)
Strand=Plus/Plus
Query 2470 aacaaaaaCTTTTATCTTCTTACAAAACTTCAGCAT-CTTGACTTCTCGGGGAGCCAAAT 2528
|||| ||||||||||| ||||||| ||||||||| | ||||||||||| | |||||||||
Sbjct 1840 AACAGAAACTTTTATCATCTTACACAACTTCAGC-TCCTTGACTTCTCAGAGAGCCAAAT 1898
Query 2529 AGAGCGACTGCCAATATTCCAGGA--TTCTGCGGTGGCCGCCAAGCTTCACTCCTTGACT 2586
||||||||| ||||| |||||||| |||| |||| |||||| ||||||||||||| ||
Sbjct 1899 AGAGCGACTACCAATGTTCCAGGACTTTCT--GGTGCCCGCCAGGCTTCACTCCTTGGCT 1956
Query 2587 CGGCTCTTGTTGCGCAACTGTAGCAAATTGAGAAGGTTGCCTAGTTTGAAGCCCTTGTCA 2646
||||||||||||| ||||||| |||||||||| || || | | ||||||| ||||||
Sbjct 1957 CGGCTCTTGTTGCATAACTGTAAAAAATTGAGAAAATTACCGAATCTGAAGCCTTTGTCA 2016
Query 2647 GGACTTCAAATTCTTGATCTTTCTGGCACTACGAGCTTAGTGGAAATGCTTGAAGTGTGC 2706
|| || |||||||||||||||||||||| | | ||||||||| |||| || ||||| |||
Sbjct 2017 GGTCTCCAAATTCTTGATCTTTCTGGCAGTTCTAGCTTAGTGAAAATACTGGAAGTATGC 2076
Query 2707 TTCGAGGATAAGCTTGAACTCAAAACTCTTAATCTCTCGGGAACTAATCTTAGCGAGTTG 2766
|||||||||||| |||||||||| ||||||||| || || ||||||||| || |||||
Sbjct 2077 TTCGAGGATAAGAAGGAACTCAAAATTCTTAATCTGTCAGGCACTAATCTTTGCCAGTTG 2136
Query 2767 GCTACCACCATCGAGGACCTGTCCAGTCTCAACGAACTCCTCCTACGTGATTGCATCAAC 2826
|| ||||||| ||||| || ||| ||||| |||||||||| || | ||||||| ||||
Sbjct 2137 CCTTCCACCATTGAGGAGCTACCCAATCTCAGCGAACTCCTCTTAAGGGATTGCACCAAC 2196
Query 2827 CTAGATGC-CATCCCAAACATCGAGAAA-CT-AGAAAATCTCGAAG-TCATTGATGTTTC 2882
||||| || | |||||||||| | ||| || || |||||||| || || |||| | |||
Sbjct 2197 CTAGAAGCTC-TCCCAAACATTG-CAAAGCTCAG-AAATCTCG-AGATCTTTGAAG-TTC 2251
Query 2883 -CGGCAGTGCCAAGCTGGCA-AAGATTGAGGGATCATTTGAGAAAATGTTTTACCTACGT 2940
|| || | ||| | ||| |||||||| |||||||||||| | |||| |||||| |||
Sbjct 2252 ATGGTTGTACTAAG-TTGCATAAGATTGATGGATCATTTGAGGACATGTCTTACCTGCGT 2310
Query 2941 GTAGTGGATCTGTCTGGAACCCAAGTG--GAGA-CACCAGAGTTGCCAGCGGATACCAAA 2997
| | | ||||| ||||| ||| ||||| || | |||| ||||||||| ||| | ||||
Sbjct 2311 GAAATAGATCTCTCTGGCACCAAAGTGATGAAACCACCGGAGTTGCCAAAGGAAAGCAAA 2370
Query 2998 ATCCATTGT-CTGAAGCGTTTTACTCGGGCAGATGGAAAATG--TTTTGAACGTGACA-C 3053
|| ||||| | |||||| |||| | |||| |||| | |||| || || | |
Sbjct 2371 CTCTATTGTAC-AAAGCGTATTACGCTAAAAGAT--AAAAGGCCTTTTAAAGGT-A-AGG 2425
Query 3054 A-TGGAGAGAAATAAAGGAAGACATTG-AACGT--GATAGGTCTGAGAATGCCAGCTCCT 3109
| ||||| || || | || ||| || || || |||| || |||||| | |||||||
Sbjct 2426 ATTGGAGTCAAGTAGTGAAAAACA-TGCAAAGTGGGATA--TCAGAGAATTCTAGCTCCT 2482
Query 3110 CTGATGCAGTTGTT-ATATCTCAAGAAATCACAGAAAAGAAGCCTGTAGAAATAAGAGAG 3168
| |||||||||||| | ||| ||||||||| |||||||| || ||| | ||| |
Sbjct 2483 CCGATGCAGTTGTTGA-ATCCCAAGAAATCTCAGAAAAGGAGTCTG--G-----AGA-A- 2532
Query 3169 GTTGAATCGAATGCACCTCGCGCCAGTGATTGTACCGAGAAAGTAGATGTCAACAAGGAA 3228
|| | ||| ||| |||| | ||||||||| | || | |||| || ||||
Sbjct 2533 ATTCAGTCGCATGAACCTGGTTCCAGTGATT-TTCC---------G--GTCAGCATGGAA 2580
Query 3229 CGTCTTCTT--AAAG-TCCCCATAGATAGGGCTCTATATCAGAAGGCACTAACATCAC-T 3284
| || || || | || ||| | |||||| | ||||||||| || | || | | |
Sbjct 2581 -G-ATT-TTGGCCAGTTTCCTATATACAGGGCTGTTTATCAGAAGTCAAT-AC--C-CTT 2633
Query 3285 TGTTGATTCCAAAATTCCACAAGAAGAAGTCTTGGAGATCAATGAAACTAATAAGCTA-G 3343
||||||||| ||| | || || || ||||||||||| ||| ||||| ||| | |
Sbjct 2634 TGTTGATTCTGAAAGT-CA-TCCAATAA-TCTTGGAGATCCATGGGTCTAAT-AGCCATG 2689
Query 3344 A--T---G-AGGAAGCACTAGCT-AGTGCTGAGTTTGTGTCTTTTGTGGACTGTA-CTCC 3395
| | | ||||| | |||||| || |||||||||||||||||||||||||||| |||
Sbjct 2690 ATCTGGAGAAGGAAACCCTAGCTAAG-GCTGAGTTTGTGTCTTTTGTGGACTGTAGCTC- 2747
Query 3396 TGAAAGGG-TCAAATCTATCTTTGA-GA-AGGCCAAATTGGTGAAGGGTTGCTGGCTAAG 3452
|| | || | | |||| ||||| | || | | |||| |||||||||||| ||||||||
Sbjct 2748 -GACACGGCTTACATCTGTCTTTAACGAGATG--AAATCGGTGAAGGGTTGTTGGCTAAG 2804
Query 3453 GATGTGCTTTGACATAAAAGACCCTTTCGATGGTGTGGATGAGGAGAAC-T-TGAAATCA 3510
||||||| ||||| || || ||||| ||||||||| ||||| | | | || |||
Sbjct 2805 GATGTGCAAGGACATTGAATACATTTTCGCTGGTGTGGAAGAGGA-A-CGTGTGGGATCC 2862
Query 3511 CTGGAGACTTTATCGATTACAAACCTTCTCTCATTGGAGACTATAAGCT-TTATTGCTAA 3569
|||||| ||| ||||||||||||||| | ||| | | | || | || || ||
Sbjct 2863 CTGGAGGTTTTGTCGATTACAAACCTTAGATTATTAAAAAGTTTAT-CAATTGGTGGTA- 2920
Query 3570 G-TT-AGAGAATCTGAAGAACCTAAGCTTAGATTGCTGCCCGAAAATCAAAACGATTTTC 3627
| || | |||||||||||| |||||| |||||||||||||||| ||||||||| |||||
Sbjct 2921 GCTTCA-AGAATCTGAAGAGGCTAAGCATAGATTGCTGCCCGAATATCAAAACGCTTTTC 2979
Query 3628 CCGGA-G-AT-GC--CTGCC-AGC--C-TACCAGTCCTGAATTTAAAGCAT-TGTGAGAA 3677
||| | || || || || ||| | || |||| || || ||||| | ||||||||
Sbjct 2980 GTGGAAGCATCGCAGCTCCCTAGCAACCTAGAAGTCTTGCATATAAAGT-TCTGTGAGAA 3038
Query 3678 CCTGGAGAAAGTTGTTG-TAGGAGTTGAAGTGTCAACTCACACTAATCTG 3726
|||||||||||| || ||| || ||||||||||||| ||||| ||||
Sbjct 3039 CCTGGAGAAAGT-GTCCATAGAAGGAGAAGTGTCAACTCTCACTACTCTG 3087
Score = 516 bits (279), Expect = 6e-145
Identities = 683/872 (78%), Gaps = 52/872 (6%)
Strand=Plus/Plus
Query 1594 TGTTTTTGGCATAGCTTGGACTTCTTTGAGCATTGTGGCTGTGTTTACTACCGTGACCTG 1653
||||| |||||||||||| ||||||| ||||| ||||| ||||||| ||| | || ||
Sbjct 997 TGTTTCTGGCATAGCTTGAACTTCTTCGAGCACTGTGGGAGTGTTTATTACTGGGAGTTG 1056
Query 1654 ATCACACAATGGATACTTGAAGGCTACTTTGATCCTGTTAGGTCTG-T-CGAAAAGGCGT 1711
||| |||| |||||||||||||||||||| ||||||||||| || | | || ||||| |
Sbjct 1057 ATCGCACATTGGATACTTGAAGGCTACTTCGATCCTGTTAGATCAGTTACG--AAGGCCT 1114
Query 1712 ACCA-GGATGGTCATTCTATCTTCATGGAGCTTATAGACCGCGGAATGCTGAAGATACAA 1770
| | ||||| ||| ||||||| |||||||||||| |||| || || ||||||||||||
Sbjct 1115 A-TATGGATGCCCATGCTATCTTAATGGAGCTTATAAACCGTGGTATTCTGAAGATACAA 1173
Query 1771 GAAAACAATGTGG-TAGTACCAGAGATGGCGATG-AGAAATGTAATTGATCCTCGAC-GT 1827
|| ||||||||| || | ||||||||||| ||| || ||| |||| |||| ||| | ||
Sbjct 1174 GAGGACAATGTGGTTA-TGCCAGAGATGGCAATGAAG-AATTTAATAGATCTTCG-CTGT 1230
Query 1828 GGTGGGCAT-TTAGGGAAATCTCGGCTTGGATTTTCTAGAGTCTATGGTGGTAACAAGAG 1886
|| || || ||| | |||| || || | || ||| ||| | |||| || ||| ||
Sbjct 1231 CGT-GGAATACTAGCCAGATCTAGGATTTCACTTGCTAAAGTTTGTGGTAGTGACATGAA 1289
Query 1887 AAAAGGAATAGGGAAAATCACCCAACTTGATGATATGATTA-AAACAGTGC-A-AG-CAA 1942
|||||| |||||||||| | |||| ||||| || | || || |||||| | | | |
Sbjct 1290 AAAAGGTCTAGGGAAAATTAACCAAGGGGATGACATCA-TAGAAGCAGTGCGACCGACTA 1348
Query 1943 AGAAAGGAGACAA-GATTACCACGA-TTCTGGTTAGTGGAGATCGTCTGCGTCGCGTAAC 2000
|||||| | || ||||| || | |||||||||||||| | ||| ||||||| | |||
Sbjct 1349 GGAAAGG-CAAAATAATTACAAC-AGTTCTGGTTAGTGGAAACCGTTTGCGTCGTGAAAC 1406
Query 2001 TCCTA-AAAAGTTCTTCAAGAA-TCTGAAAGAGCTTGAAG-TACTTGGCCTTTTTGAGCC 2057
||| | | | ||||| ||| ||||| || |||| || |||||||||||||| | ||
Sbjct 1407 TCC-AGAGATTTTCTT-TGGAACGCTGAAGGATCTTG-AGATACTTGGCCTTTTTAAACC 1463
Query 2058 CACAGTAAAACCA-TTTGTCCCGTCTTT-TTCAGATC-AGCTCAAACTCCTCCGGGTTCT 2114
|||| | | || |||||||| ||||| || | | | || | ||||| | || |||||
Sbjct 1464 CACA-TTGGATCATTTTGTCCCATCTTTATTAACA-CTAG-TGAAACT--T-CGAGTTCT 1517
Query 2115 TATAATCAGGGACTGTGATCTCCTGAAAAGCAT-T-GAAGAGCTTAAGGCTCTTAC-AA- 2170
| |||||||||||||| | ||| |||| || | || || |||||| ||| | | ||
Sbjct 1518 CGTGATCAGGGACTGTGACCGACTG-AAAG-ATATAGAGGATCTTAAGTCTC-T-CGAAG 1573
Query 2171 AGCTAAATACTCTTGAAGTTTCTGGTGCTAGCTCCCTGA-GCAAAATATCTGAAAAATTC 2229
|||| | ||||||||||||||||||||||||||||| | ||||| ||||| |||||
Sbjct 1574 GGCTACGTGTTCTTGAAGTTTCTGGTGCTAGCTCCCTGAAG-AAAATCTCTGACGAATTC 1632
Query 2230 TTTGAGTCATT-TCCTGAACTCCGAAGTCTTCACCTCTCTGGGCTTAAGATCG-AGTCTT 2287
||| || |||| || | |||| | ||||||||| ||||||| |||| ||||| | ||||
Sbjct 1633 TTTAAGGCATTGTC-TAAACTTCAAAGTCTTCATCTCTCTGAGCTTCAGATCACA-TCTT 1690
Query 2288 CCCCTCCCAGTATTTCTGGCCTGAAGGAACTTCACTGTCTCATCATCAAAGACTGCCCTT 2347
||||| |||| ||||||| |||| ||||||||| |||||||||||||| ||||| ||||
Sbjct 1691 CCCCTTCCAGCATTTCTGAACTGACGGAACTTCATTGTCTCATCATCAAGGACTGTCCTT 1750
Query 2348 TATTGCAAGATCTGCCAAACATACAAGAACTAGTAAATCTTGAGGTTGTTGATGTTTCTG 2407
||||| ||||| ||||| |||||||||||||||| || ||||||||||||||| ||||||
Sbjct 1751 TATTGGAAGATTTGCCAGACATACAAGAACTAGTGAAGCTTGAGGTTGTTGATATTTCTG 1810
Query 2408 GTGCTAGTGGGCTTCGAACTTGTTTCGACAAC 2439
||||| |||| |||| |||||| |||||||||
Sbjct 1811 GTGCTCGTGGACTTCAAACTTGCTTCGACAAC 1842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158243388534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5