BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G45590.1 Length=772 Score E Sequences producing significant alignments: (Bits) Value Ahg494426 jgi|Araly1|494426|fgenesh2_kg.8__242__AT5G45590.1 1055 0.0 > Ahg494426 jgi|Araly1|494426|fgenesh2_kg.8__242__AT5G45590.1 Length=751 Score = 1055 bits (571), Expect = 0.0 Identities = 684/735 (93%), Gaps = 21/735 (3%) Strand=Plus/Plus Query 23 CAATCAGAAAATTGTTCTTCCCCTTGGAGACGACAATGCAGAGGTTTTGCACTAAGCTAC 82 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 CAATCAGAAAATTGTTCTTCCTCTTGGAGACGACAATGCAGAGGTTTTGCACTAAGCTAC 60 Query 83 GTTCCATTTCTCTCCAATCTAATCGGAATCTCTCTTTTTACGGTGCTTCTCCTCACCGTC 142 |||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 61 GTTCCATTTCCCTCCAATCTAATCGGAATCTCTCTTTTTCCGGTGCTGCTCCTCACCGTC 120 Query 143 TCATTCACCATTCTCCTTCTCCGAGTCGTCACTTAACAACAACAACCCTAGGTTTTGCCA 202 |||||||||| |||||||| ||||||||| |||||||||||||||||| |||| Sbjct 121 TCATTCACCA------TTCTCCGACTCGTCACTT---AACAACAACCCTAGGTTTCGCCA 171 Query 203 ATTCCACCAAATGGAGCTTCGTTCCCGCCGCCGGAGTTTTTCCGTCGAATGTTAGCTCCA 262 ||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||||| Sbjct 172 ATTCCACCAAATGGAGCTTCGTTCCCGCCGCCGGAGTTTCTCCTTTGAATATTAGCTCCA 231 Query 263 TGGGCACTACCTTTGTTCCTCATCACTTTGTTCAAGTACGAAATATCACTTCTAAGGAAA 322 ||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 232 TGGGCTCTACCTTTGTTCCTCATCACTTTGTTCAAGTACGGAATATCACTTCCAAGGAAA 291 Query 323 AAATGGCAAAATGGAAGAAGAAGTGGAGACCTAGGACTCCAATCACATCAAAAGTCAAGA 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 AAATGGCAAAATGGAAGAAGAAGTGGAGACCTAGGACTCCAATCACATCAAAAGTCAAGA 351 Query 383 AAGTCAAGATTAAGTTTTATTCGTCATTCAAAGACAGGTTTAAACCACTAAATGATGGTA 442 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 AAGTCAAGATCAAGTTTTATTCGTCATTCAAAGACAGGTTTAAACCACTAAATGATGGTA 411 Query 443 CCATCCGTCGCTGGAAAGAAGGCAAGCGCCACAACGCACATTTGAAGTCAAAGAAATCGA 502 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | Sbjct 412 CCATCCGTCGCTGGAAAGAGGGCAAGCGCCACAACGCACACTTGAAGTCAAAGAAATCAA 471 Query 503 AGCGTAGATTGAGACAACCTGGACTAGTACCACCAGCATATGCGAAAGTCATGAAGAAAC 562 |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| Sbjct 472 AGCGTAGATTGAGACAGCCTGGACTAGTACCACCAGCATATGCCAAAGTTATGAAGAAAC 531 Query 563 TCAATTTCTGCAATTGAGAGATAGAGCATGAAACAGTATGATTACGATGAAAGCCAGTCT 622 |||||||||||||||||||||||||| | |||||| |||||||||||||||||||| ||| Sbjct 532 TCAATTTCTGCAATTGAGAGATAGAGAAAGAAACAATATGATTACGATGAAAGCCAATCT 591 Query 623 CTTCCAGTTTTTACC-AGATAATTTTGCTCACTGGTACTCAAAAAATCTTTATGTTTCAG 681 |||||||||||| || |||||||||||||||||||||| |||||| |||| ||||||||| Sbjct 592 CTTCCAGTTTTTTCCCAGATAATTTTGCTCACTGGTACCCAAAAA-TCTTCATGTTTCAG 650 Query 682 TTTAAC-TTCATTGGAATAAATTG--A-----GTTTTCGAAATATGGTGAAATTGGCGTT 733 || ||| || |||||||||||||| | ||||| ||||| ||||||||||||| || Sbjct 651 TT-AACCTT-ATTGGAATAAATTGGCATTTTAGTTTTTGAAATCTGGTGAAATTGGCATT 708 Query 734 AAGACTGATCGGTTT 748 ||||||||||||||| Sbjct 709 AAGACTGATCGGTTT 723 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28477818999 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5