BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G45680.1
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915521 jgi|Araly1|915521|Al_scaffold_0008_272 1009 0.0
> Ahg915521 jgi|Araly1|915521|Al_scaffold_0008_272
Length=627
Score = 1009 bits (546), Expect = 0.0
Identities = 602/629 (96%), Gaps = 4/629 (1%)
Strand=Plus/Plus
Query 15 ATGAGCTCCTTGGGGTTTTCAGTTGGAACTTGTTCTCCTCCAAGTGAGAAAAGAAAATGC 74
|||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1 ATGAGCTCCTTGGGATTTTCAGTTGGGACTTGTTCTCCTCCAAGTGAGCAAAGAAAATGC 60
Query 75 AGATTTCTTGTGAATAATAGCTTAAACAAAGCAGAGGCTATTAACTTGAGAAACAAGCAA 134
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 61 AGATTTCTTGTGAATAATAGCTTAAACAAAGCAGAGACTATTAACTTGAGAAACACGCAA 120
Query 135 AAAGTTTCTTCTGATCCTGAGTTAAGTTTTGCCCAATTATCCTCATGTGGTAGAAGAGAA 194
|||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 121 AAAGCTTCTTATGATCCTGAGTTAAGTCTTGTCCAATTATCCTCATGTGGTAGAAGAGAA 180
Query 195 GCAATTATTGGTTTTGGTTTCTCTATTGGCTTGCTTGATAATGTTTCTGCATTAGCCGAA 254
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GCAATTCTTGGTTTTGGTTTCTCTATTGGCTTGCTTGATAATGTTTCCGCATTAGCCGAA 240
Query 255 ACAACTTCTTGTGAATTCTCTGTGTCTCCTTCTGGTCTTGCTTTTTGTGATAAAGTTGTT 314
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 241 ACAACTTCTTGTGAATTCTCTGTATCTCCTTCTGGTCTTGCTTTCTGTGATAAAGTTGTT 300
Query 315 GGTTATGGTCCTGAAGCTGTTAAAGGGCAACTAATCAAGGCACATTATGTAGGGAAGTTG 374
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTTATGGTCCTGAAGCTGTCAAAGGGCAACTAATCAAGGCACATTATGTAGGGAAGTTG 360
Query 375 GAGAATGGGAAAGTCTTTGATAGTAGCTATAATCGAGGGAAA-CCTCTTAC-TTTCCGAA 432
|||||||||||||||||||||||||||||||||||| ||||| ||||| || ||| ||||
Sbjct 361 GAGAATGGGAAAGTCTTTGATAGTAGCTATAATCGA-GGAAAGCCTCTAACATTT-CGAA 418
Query 433 TTGGTGTTGGTGAGGTGATAAAAGGTTGGGATCAAGGAATCCTTGGCTCTGATGGAATTC 492
| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 419 TAGGTGTTGGCGAGGTGATAAGAGGTTGGGACCAAGGAATCCTTGGCTCTGATGGAATTC 478
Query 493 CTCCTATGCTTACTGGTGGGAAACGAACATTGAGGATTCCTCCAGAACTCGCGTATGGTG 552
||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 479 CTCCTATGCTTACCGGTGGGAAACGAACATTGAAGATTCCTCCAGAACTCGCATATGGTG 538
Query 553 ATCGAGGCGCAGGTTGCAAAGGAGGCTCATGCCTTATTCCTCCAGCTTCGGTTCTTCTCT 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATCGAGGCGCAGGTTGCAAAGGAGGCTCATGCCTTATTCCTCCAGCTTCGGTTCTTCTCT 598
Query 613 TTGACATTGAGTACATAGGTAAAGCTTGA 641
|||||||||||| ||||||||||||||||
Sbjct 599 TTGACATTGAGTTCATAGGTAAAGCTTGA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31451406525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5