BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46050.1
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494374 jgi|Araly1|494374|fgenesh2_kg.8__190__AT5G46050.1 2793 0.0
Ahg915474 jgi|Araly1|915474|Al_scaffold_0008_225 1400 0.0
> Ahg494374 jgi|Araly1|494374|fgenesh2_kg.8__190__AT5G46050.1
Length=1806
Score = 2793 bits (1512), Expect = 0.0
Identities = 1714/1812 (95%), Gaps = 11/1812 (1%)
Strand=Plus/Plus
Query 45 aaaagaaagaaagaaagaaggtagagaggaaatgacagtagaagaggtaggagaCGATTA 104
|||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAA-AAAGAAAAAAAGAAGATAGAGAGGAAATGACAGTAGAAGAGGTAGGAGACGATTA 59
Query 105 CACAAAAGATGGAACAGTTGATCTTCAAGGCAATCCTGTTCGAAGATCCATTAGAGGTCG 164
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 TACAAAAGATGGAACAGTTGATCTTCGAGGCAATCCTGTTCGAAGATCCATTAGAGGTCG 119
Query 165 TTGGAAAGCTTGCTCTTTCGTTGTTGTGTACGAGGTGTTTGAACGGATGGCTTATTACGG 224
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 120 TTGGAAAGCTTGCTCTTTCGTCGTTGTGTACGAGGTGTTTGAACGGATGGCTTATTATGG 179
Query 225 GATATCAAGCAACCT-GTTTATTTACATGACAACCAAATTGCACCAAGGAACGGTCAAGT 283
||||||||||||||| | | || |||||||| ||||||||||||||||| |||||| |||
Sbjct 180 GATATCAAGCAACCTAG-TGATATACATGACTACCAAATTGCACCAAGGCACGGTCGAGT 238
Query 284 CGTCGAACAATGTGACCAATTGGGTTGGGACTAGTTGGCTCACTCCAATCTTGGGTGCTT 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CGTCGAACAATGTGACCAATTGGGTTGGGACTAGTTGGCTCACTCCAATCTTGGGTGCTT 298
Query 344 ACGTTGGAGACGCTCTTCTCGGTCGCTACATCACTTTCGTCATCTCTTGTGCTATCTA-T 402
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 ATGTTGGAGACGCTCTTCTCGGTCGCTACATCACTTTCGTCATCTCTTGTGCTATCTACT 358
Query 403 TTCTCGGGGATGATGGTGTTAACATTATCAGTAACTATACCGGGAATTAAGCCACCAGAA 462
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TT-TCGGGGATGATGGTGTTAACATTATCAGTAACTATACCGGGAATTAAGCCACCAGAA 417
Query 463 TGTTCCACGACTAATG-TGGAAAATTGCGAAAAA-GCTTCGGTTTTACAATTAGCAGTTT 520
|||||| || |||| | | ||| ||||| ||||| |||||||||||||||||||| ||||
Sbjct 418 TGTTCCGCGGCTAA-GTTCGAAGATTGC-AAAAAGGCTTCGGTTTTACAATTAGCGGTTT 475
Query 521 TCTTTGGAGCGTTATACACATTAGCAATCGGTACAGGCGGTACGAAACCGAACATATCAA 580
||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||
Sbjct 476 TCTTTGGAGCGTTATACACCTTAGCAATCGGTACAGGTGGAACAAAACCGAACATATCAA 535
Query 581 CAATAGGAGCTGATCAATTCGATGTATTCGACCCAAAGGAGAAGACTCAAAAACTATCAT 640
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCATAGGAGCTGATCAATTCGATGTATTCGACCCAAAGGAGAAGACTCAAAAACTATCAT 595
Query 641 TCTTCAACTGGTGGATGTTTAGTATCTTCTTTGGTACTCTCTTCGCCAACACTGTTCTTG 700
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 596 TCTTCAACTGGTGGATGTTTAGTATCTTCTTTGGTACTCTTTTCGCCAACACTGTTCTTG 655
Query 701 TCTATGTTCAAGATAATGTTGGCTGGACCTTGGGTTATGGACTTCCAACATTAGGTTTGG 760
|||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||
Sbjct 656 TCTATGTTCAAGATAATGTTGGTTGGACTTTGGGGTATGGACTTCCAACATTAGGTCTGG 715
Query 761 CTATTTCCATTACCATTTTCTTGTTGGGCACTCCGTTTTACCGCCATAAACTTCCCACTG 820
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 716 CTATTTCCATTACCATTTTCTTGTTGGGTACTCCGTTTTACCGTCATAAACTTCCCACTG 775
Query 821 GAAGCCCATTCACCAAGATGGCTCGAGTCATCGTGGCTTCATTTCGCAAAGCCAATGCAC 880
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 776 GAAGTCCTTTCACCAAGATGGCTCGAGTCATTGTGGCTTCATTTCGCAAAGCCAAAGCAC 835
Query 881 CAATGACGCATGACATCACGAGCTTCCATGAGCTGCCTTCTCTTGAATATGAGCGGAAAG 940
||||| ||||||||| ||| |||||||| ||||| || || |||||||||||||||||||
Sbjct 836 CAATGGCGCATGACAACACAAGCTTCCACGAGCTACCCTCACTTGAATATGAGCGGAAAG 895
Query 941 GCGCCTTTCCGATCCA-CCCTACTCCAAGTTTACGATTCTTAGACAGAGCTTCACTCAAA 999
|||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 896 GCGCCTTTCCGATCCAACCC-ACTCCAAGTTTACGATTCCTAGACAGAGCTTCACTCAAA 954
Query 1000 ACAGGAACAAATCATAAATGGAATCTTTGTACTACCACAGAAGTTGAAGAAACAAAACAA 1059
|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 955 ACAGGAACAACTCATAAATGGAATCTTTGTACAACCACAGAAGTCGAAGAAACAAAACAA 1014
Query 1060 ATGCTGAGAATGTTACCAGTCTTGTTCATAACTTTCGTCCCAAGTATGATGCTTGCACAA 1119
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1015 ATGCTGAGAATGTTACCTGTCTTGTTCATAACTTTCGTCCCAAGCATGATGCTTGCTCAA 1074
Query 1120 ATCAACACATTGTTTGTGAAACAAGGAACCACTCTAGACCGAAAGGTTACCGGATCTTTC 1179
|||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1075 ATCAACACTTTGTTTGTTAAACAAGGAACCACTCTAGACCGTAAGGTCACCGGATCTTTC 1134
Query 1180 AGCATCCCACCAGCGAGTCTCTCCGGATTTGTCACACTCTCAATGCTTATTTCCATAGTC 1239
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1135 AGCATCCCACCAGCAAGTCTCTCCGGTTTTGTCACACTCTCAATGCTCATTTCCATAGTC 1194
Query 1240 TTGTATGACCGAGTTTTCGTCAAGATAACCCGAAAATTCACTGGTAATCCAAGAGGCATT 1299
|| ||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1195 TTATATGATCGAGTCTTCGTCAAGATAACCCGAAAATTCACCGGAAATCCAAGAGGCATT 1254
Query 1300 ACTTTGCTTCAACGAATGGGAATTGGTCTTATCTTTCATATCCTCATCATGATCGTCGCA 1359
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1255 ACTTTGCTTCAACGAATGGGAATTGGTCTTATCTTCCATATCCTCATCATGATCGTTGCA 1314
Query 1360 TCTGTCACTGAAAGGTATAGACTCAAAGTCGCTGCTGATCATGGTCTCATCCACCAAACC 1419
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1315 TCTGTCACTGAAAGGTATAGACTCAAGGTCGCTGCTGATCATGGTCTCATTCACCAAACC 1374
Query 1420 GGAGTAAAACTACCATTAACCATCTTTGCTTTGCTTCCACAATTCGTCCTAATGGGTATG 1479
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1375 GGAGTAAAACTACCTTTAACCATCTTTGCTTTACTTCCACAATTCGTCCTAATGGGTATG 1434
Query 1480 GCTGATTCGTTCTTAGAAGTTGCAAAGCTTGAGTTTTTCTACGATCAAGCTCCCGAGAGC 1539
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1435 GCTGATTCGTTCTTAGAAGTTGCAAAGCTCGAGTTCTTCTACGATCAAGCTCCCGAGAGC 1494
Query 1540 ATGAAAAGCCTCGGGACATCATATTCGACAACGAGTTTGGCGATTGGGAATTTCATGAGC 1599
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1495 ATGAAAAGCCTCGGGACATCATATTCGACAACGAGTTTAGCGATTGGGAATTTCATGAGC 1554
Query 1600 AGTTTCTTGTTATCTACGGTATCTGAGATAACAAAGAAACGAGGAAGAGGATGGATTTTG 1659
|||||||||||||| || || || ||||| ||||||||||||||||||||||||||||||
Sbjct 1555 AGTTTCTTGTTATCAACAGTGTCAGAGATCACAAAGAAACGAGGAAGAGGATGGATTTTG 1614
Query 1660 AACAACCTTAATGAGTCTAGGTTGGATTACTATTACCTGTTCTTTGCGGTACTTAATCTG 1719
||||| || || ||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 1615 AACAATCTGAACGAGTCTAGGTTGGATTATTACTACTTGTTCTTTGCGGTACTTAATCTG 1674
Query 1720 GTTAACTTCGTTTTGTTCTTGGTCGTGGTTAAGTTTTATGTTTATAGAGCTGAGGTTACT 1779
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GTTAACTTCGTCTTGTTCTTGGTCGTGGTTAAGTTTTATGTTTATAGAGCTGAGGTTACT 1734
Query 1780 GATTCGGTTGATGTGAAAGAGGTGGAAATGAAAGAGACTGAATAACAAATAATGAATAAT 1839
||||| || | |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1735 GATTCAGTGGGTGTGAAAGAGGTGGAAATGAAAGAGAATGAATGACAAATAATGAATAAT 1794
Query 1840 ATAGATTTCTCT 1851
|||| ||| |||
Sbjct 1795 ATAGTTTTTTCT 1806
> Ahg915474 jgi|Araly1|915474|Al_scaffold_0008_225
Length=1749
Score = 1400 bits (758), Expect = 0.0
Identities = 1427/1742 (82%), Gaps = 78/1742 (4%)
Strand=Plus/Plus
Query 76 atgacagtagaagaggtaggagaCGATTACACAAAAGATGGAACAGTTGATCTTCAAGGC 135
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||
Sbjct 1 ATGACAGTAGAAGAGGTAGGAGATGATTATACAAAAGATGGAACAGTTGATCTTCGAGGA 60
Query 136 AA-TCCTGTTCGAAGATC-CATTAGAGGTCGTTGGAAAGCTTGCTCTTTCGTTGTTGTGT 193
|| | | || |||||||| || | ||| |||||||||||||| || ||||| |||||||
Sbjct 61 AATTGC-GTCCGAAGATCTCA-AACAGGCCGTTGGAAAGCTTGTTCCTTCGTCGTTGTGT 118
Query 194 ACGAGGTGTTTGAACGGATGGCTTATTACGGGATATCAAGCAACCT-GTTTATTTACATG 252
||||||| |||||| | ||||| ||||| || |||||||||||| | | | || ||||||
Sbjct 119 ACGAGGTATTTGAAAGAATGGCGTATTATGGAATATCAAGCAACTTAG-TGATCTACATG 177
Query 253 ACAACCAAATTGCACCAAGGAACGGTCAAGTCGTCGAACAATGTGACCAATTGGGTTGGG 312
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACTACCAAATTGCACCAAGGCACGGTCAAGTCGTCGAACAATGTGACCAATTGGGTTGGG 237
Query 313 ACTAGTTGGCTCACTCCAATCTTGGGTGCTTACGTTGGAGACGCTCTTCTCGGTCGCTAC 372
||||| |||||||||||||||||||||||||| |||| || |||| |||||||||||||
Sbjct 238 ACTAGCTGGCTCACTCCAATCTTGGGTGCTTATGTTGCCGATGCTCATCTCGGTCGCTAC 297
Query 373 ATCACTTTCGTCATCTCTTGTGCTATCTATTTCTCGGGGATGATGGTGTTA---ACATTA 429
||||||||||||||||||| ||||||||||| | ||| | |||| ||| || |||
Sbjct 298 ATCACTTTCGTCATCTCTTCCGCTATCTATTTATTGGG-A--ATGGCATTACTGACGTTA 354
Query 430 TCAGTAACTATACCGGGAATTAAGCCACCAGAA-TGTTCCACGACTAATGTGGAAAATTG 488
|||||| || |||||| | |||| ||||| ||| ||||| ||| ||||||| ||||| ||
Sbjct 355 TCAGTATCTCTACCGGCACTTAAACCACC-GAAATGTTCGACGGCTAATGTTGAAAACTG 413
Query 489 CGAAAAAGCTTCGGTTTTACAATTAGCAGTTTTCTTTGGAGCGTTATACACATTAGCAAT 548
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 414 CGAAAAAGCTTCGGTTTTACAATTAGCGGTATTCTTTGGAGCGTTATACACATTAGCGGT 473
Query 549 CGGTACAGGCGGTACGAAACCGAACATATCAACAATAGGAGCTGATCAATTCGATGTATT 608
|||||||||||||||||||| ||||| || |||||||| |||||||||||||||| |||
Sbjct 474 TGGTACAGGCGGTACGAAACCAAACATTTCTACAATAGGTGCTGATCAATTCGATGAATT 533
Query 609 CGACCCAAAGGAGAAGACTCAAAAACTAT-CATTCTTCAACTGGTGGATGTTTAGTATCT 667
|||||| ||||||| || ||| |||| || |||||||||| |||||||||||||||||||
Sbjct 534 CGACCCTAAGGAGAGGATTCATAAAC-ATTCATTCTTCAATTGGTGGATGTTTAGTATCT 592
Query 668 TCTTTGGTACTCTCTTCGCCAACA-CTGTTCTTGTCTATGTTCAAGATAATGTTGGCTGG 726
||||||||||| |||| |||| || |||||||||||||||||||||||||||| || |||
Sbjct 593 TCTTTGGTACTTTCTTTGCCA-CAACTGTTCTTGTCTATGTTCAAGATAATGTGGGTTGG 651
Query 727 ACCTTGGGTTATGGACTTCCAACATTAGGT-TTGGCTATT-TCCAT-TACCATTTTCTTG 783
|| | |||||||| ||| |||| || ||| ||| || || || || | | || ||||||
Sbjct 652 GCCATAGGTTATGGGCTTTCAACTTTGGGTCTTG-CT-TTCTCAATATTC-ATATTCTTG 708
Query 784 TTGGGCACTCCGTTTTACCGCCATAAACTTCCCA-CTGGAAGCCCATTCACCAAGATGGC 842
||||| |||| ||| |||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 709 TTGGGAACTCGGTTATACCGCCATAAACT-CCCAACGGGAAGCCCATTCACCAAGATGGC 767
Query 843 TCGAGTCATCGTGGCTTCATTTCGCAAAGCCAATGCA-CCAATGACGCATGACATC-ACG 900
| ||||||| ||||||||| ||||||||||| | | | || ||| | | ||| || |||
Sbjct 768 TAGAGTCATTGTGGCTTCACTTCGCAAAGCCCACG-AGCCTATGCCCCGTGAT-TCGACG 825
Query 901 AGCTTCCATGAGCTGCCTTCTCTTGAATATG-A-GCGGAAAGGCGCCTTTCC-GATCCAC 957
||||| ||||||| | | | ||||||| | || ||||| || ||||| ||||||
Sbjct 826 TGCTTCTATGAGCTTTCGCCAATGGAATATGCAAGCA-AAAGG-GC-TTTCCCGATCCAT 882
Query 958 CCTACTCCAAGT-TTACGATTCTTAGA-CAGAGCTTCACTCAAAACAGGAACAAATCATA 1015
|||||| |||| ||| |||||||||| | |||||||||||||||| ||| ||| ||||
Sbjct 883 TCTACTCTAAGTCTTA-GATTCTTAGATC-GAGCTTCACTCAAAACCGGATCAACCCATA 940
Query 1016 AATGGAATCTTTGTACTACCACAGAAGTTGAAGAAACAAAACAAATGCTGAGAATGTTAC 1075
|||||| ||| ||||| | ||||||||| |||||||||||||| ||||| | ||||||||
Sbjct 941 AATGGAGTCTCTGTACAATCACAGAAGTGGAAGAAACAAAACAGATGCTAAAAATGTTAC 1000
Query 1076 CAGTCTTGTTCATAACTTTCGTCCCAAGTATGATGCTTGCACAAATCAAC-ACATTGTTT 1134
| ||| | ||| |||| ||||||||||| ||||||||||| ||||| || || |||||
Sbjct 1001 CTGTCCTCTTCGTAACATTCGTCCCAAGCATGATGCTTGCTCAAAT-AATGACTTTGTTC 1059
Query 1135 GTGAAACAAGGAACCACTCTAGACCGAAAGGT-T-ACCGG-ATCTTTCAGCATCCCACCA 1191
| ||||||||||| || || ||||| | | | || | ||| ||||||||| |||
Sbjct 1060 ATCAAACAAGGAACGACCCTCGACCGTC-G-TCTCACAAACAACTT-CAGCATCCCGCCA 1116
Query 1192 GCGAGTCTCTCCGGATTTGTCA-CACTCTCAATGCTTATTTCCATAGTCTTGTATGACCG 1250
|| ||||||| || || || || |||||||||| | || |||||| | || |||||
Sbjct 1117 GCAAGTCTCTTAGGCTTCA-CAACATTCTCAATGCTCGTCTCTATAGTCATATACGACCG 1175
Query 1251 AGT-TTTCGTCAAGA-TAACCCGAAAATTCACTGGTAATCCAAGAGGCATTACTTTGCTT 1308
|| ||| || || | | | ||||| | || || ||||||||||| || || |||||
Sbjct 1176 TGTATTT-GTTAA-ACTCATGAGAAAACTAACCGGAAATCCAAGAGGTATCACATTGCTC 1233
Query 1309 CAACGAATGGGAATTGGTCTTATCTTTCATATCCTCATCATGATCGTCGCATCTGTCACT 1368
|| ||||||||||| ||| | ||| |||| ||||| ||||||||| | || || | ||
Sbjct 1234 CAGCGAATGGGAATCGGTATGATCCTTCACATCCTAATCATGATCATAGCGTCCATAACC 1293
Query 1369 GAAAGGTATAGACTCAAAGTCGCTGCTGATCATGGTCTCATCCACCAAACCGGAGTAA-A 1427
||| ||||||| ||||| ||||||||||| | || || | |||||| |||| ||| |
Sbjct 1294 GAACGGTATAGGCTCAAGGTCGCTGCTGAACGCGGGCTAAACCACCAGACCGCTGTACCA 1353
Query 1428 ACTACCATTAACCATCTTTG-CTTTGCTTCCACAAT-TCGTCCTAATGGGTATGGCTGAT 1485
| | || || ||||| ||| | ||||||||||| | | || |||||||| ||||||||
Sbjct 1354 ATTCCC-TTGACCAT-TTTCACATTGCTTCCACAGTAT-GTGATAATGGGTTTGGCTGAT 1410
Query 1486 TCGTTCT-TAGAAGTT-GCAAAGCTTGAGTTTTTCTACGATCAAGCTCCCGAGAGCATGA 1543
| || | |||| | | |||||||| ||||| |||||||||||||| || ||||| ||||
Sbjct 1411 GCTTT-TATAGA-GATAGCAAAGCTCGAGTTCTTCTACGATCAAGCACCAGAGAGTATGA 1468
Query 1544 AAAGCCTCGGGACATCATATTCGA-CAACGAGTTTGGCGATT-GGGAATTTCATGAGCAG 1601
|||||||||||||||||||| ||| || | ||| |||| | | ||||||||| |||||||
Sbjct 1469 AAAGCCTCGGGACATCATATACGAGCA-CAAGTATGGC-AGTCGGGAATTTCCTGAGCAG 1526
Query 1602 TTTCTTG-TTATC-TACGGTATCTGAGATAACAAAGAAACGAGG-AAGAGGATGGATTTT 1658
||| ||| || || | || | ||| |||||||||||| | ||| |||||||||||||
Sbjct 1527 TTTTTTGCTT-TCGTCCG-TGTCTCAGATAACAAAGACGC-AGGGAAGAGGATGGATTCA 1583
Query 1659 GAACAACCTT-AATGAGTCTAGGTTGGATTACTATTACCTGTTCTTTGCGGTACTTAATC 1717
|||||| || |||||||||||||||||| | |||||| ||||||| ||||||||||||
Sbjct 1584 AAACAAC-TTGAATGAGTCTAGGTTGGATAAATATTACATGTTCTTCGCGGTACTTAATT 1642
Query 1718 TGGTTAACTTCGTTTTGTTCTTGGTCGTGGTTA-AGTTTTATGTTTATAGAGCTGAGGTT 1776
||||||||||| | | |||||||| || ||| | ||||||| || |||||||| |||
Sbjct 1643 TGGTTAACTTCATCCTCTTCTTGGTTGTAATTAGA-TTTTATGAGTACAGAGCTGATGTT 1701
Query 1777 AC 1778
||
Sbjct 1702 AC 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69514697125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5