BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46110.4 Length=2037 Score E Sequences producing significant alignments: (Bits) Value Ahg494366 jgi|Araly1|494366|fgenesh2_kg.8__182__AT5G46110.1 2881 0.0 > Ahg494366 jgi|Araly1|494366|fgenesh2_kg.8__182__AT5G46110.1 Length=1981 Score = 2881 bits (1560), Expect = 0.0 Identities = 1883/2025 (93%), Gaps = 78/2025 (4%) Strand=Plus/Plus Query 1 ATTATTATCTTCCaaaaaaaCAAAATTATACAGATGATGATGGTGATATGGAACTTCGAT 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 13 ATTATTATCTTCCAAAAAAACAAAATTATACAGATGATGA---TGATATGGAACTTCGAT 69 Query 61 TGGCTAATATTCACTGTG--TCTCTAAAAACCATCCACTTATCAAGATAAGATGGACCCT 118 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 70 TGGCTAATATTCACTGTGTCTCTCTAAAAACCATCCACTTATCAAGATAAGATGGACCCT 129 Query 119 ACACTCATCCAATCTAAACCAGTATCTCAAGATTCTTATCTAATTACATCATTCTCTACC 178 ||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||| Sbjct 130 ACACTCATCCAATCTAAACCAATATCTCACGATTCTTATCTAATCACATCATTCTCAACC 189 Query 179 GTTAGATGAAATTGACCATTAACCCTACCATAAC-TCCATACACCGCGAGATACTGGATT 237 ||||||| ||||| |||||||||| || ||| || ||||||||||||| | ||| |||| Sbjct 190 GTTAGATCAAATTCACCATTAACCGTATCAT-ACGCCCATACACCGCGACACACTAGATT 248 Query 238 AACCAAATCGAGATCATCGTAGCCGTCCGATCAACAAGTACCATCTCTTGAAATACTCGA 297 ||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 249 AACCAAATCAAAATCATCGTAGCCGTCCGATCAACAAGTATCATCTCTTGAAATACTCGA 308 Query 298 AATCCTCATAAGTCCG-TCCCTCTTTGCTCTCACTATC-AAAACTCTGAATTTCGATTTC 355 || ||||||| | || | |||||||||||||||| || ||||||||||||||||||||| Sbjct 309 AAACCTCATATCTTCGCTTCCTCTTTGCTCTCACTGTCTAAAACTCTGAATTTCGATTTC 368 Query 356 AATGGAGTCACGCGTGCTGTTACGCGCCACCGCGAATGTCGTTGGAATTCCGAAATTGAG 415 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 369 AATGGAGTCACGCGTGCTGTTACGCGCCACCGCGAATGTCGTCGGAATTCCGAAATTGAG 428 Query 416 ACGACCAATCGGAGCGATCCACCGTCAATTCAGCACTGCA---TCGTCTTC--C-TCGTT 469 |||||| ||||||||||||||||||||||||||||||||| |||||||| | ||||| Sbjct 429 ACGACCTATCGGAGCGATCCACCGTCAATTCAGCACTGCATCGTCGTCTTCGTCGTCGTT 488 Query 470 CTCGGTTAAACCAATCGGAGGAATCGGAGAGGGAGCGAATCTGATCTCCGGTCGTCAGCT 529 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 489 CTCGGTTAAACCAATCGGAGGAATCGGAGAAGGAGCGAATCTGATCTCCGGTCGTCAGCT 548 Query 530 TCGTCCAATTCTTCTTCTCGATTCGTCGGCGATCAACGGAGGAGAGAAAAGAGAAATTCT 589 |||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 549 TCGTCCGATTCTTCTTCTCGATTCGTCGGCGATCAACGGCGGAGAGAAAAGAGAGATTCT 608 Query 590 CAAACCGGTTAAAGCCGCCGCTGCTGAAGGTGGAGATACCGCTGGGGATGCTAAAGTTGG 649 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 609 CAAACCGGTTAAAGCCGCCGCTGCTGAAGGTGGAGATACCGCTGGGGAAGCTAAAGTTGG 668 Query 650 ATTCCTCGCCAAGTATCCATGGCTAGTCACTGGATTCTTCTTCTTCATGTGGTACTTCTT 709 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 669 ATTCCTCGCCAAGTATCCATGGCTAGTCACTGGGTTCTTCTTCTTCATGTGGTACTTCTT 728 Query 710 GAATGTGATTTTCAACATCCTTAACAAGAAGATCTATAATTACTTCCCTTATCCCTATTT 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 GAATGTGATTTTCAACATCCTTAACAAGAAGATCTATAATTACTTCCCTTATCCCTATTT 788 Query 770 TGTATCGGTGATACACTTGTTCGTGGGAGTTGTTTACTGCTTGATCAGCTGGTCCGTGGG 829 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 789 TGTATCGGTGATACACTTGTTCGTGGGAGTTGTATACTGCTTGATCAGCTGGTCCGTGGG 848 Query 830 TCTTCCTAAACGTGCCCCGATTGACTCGAACCTCCTCAAGGTATTGATACCAGTCGCAGT 889 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 849 CCTTCCTAAACGAGCCCCAATTGACTCGAACCTCCTCAAGGTATTGATACCAGTTGCAGT 908 Query 890 CTGTCACGCCTTAGGCCATGTCACTAGCAATGTCTCTTTCGCTGCGGTTGCTGTCTCCTT 949 |||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 909 CTGTCACGCCATAGGCCATGTCACTAGCAATGTTTCCTTCGCCGCGGTTGCTGTCTCCTT 968 Query 950 CACTCACACCATCAAAGCACTTGAGCCATTCTTCAATGCGGCTGCTTCTCAATTCATTAT 1009 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 969 CACCCACACCATCAAAGCACTTGAGCCATTCTTCAATGCGGCTGCTTCTCAATTCATTAT 1028 Query 1010 GGGACAATCCATCCCCATAACACTATGGTTGTCTCTAGCTCCTGTTGTTCTTGGTGTTGC 1069 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1029 GGGACAATCCATCCCCATAACACTATGGTTGTCTCTAGCTCCTGTTGTTCTTGGTGTTGC 1088 Query 1070 AATGGCTTCACTAACTGAGCTATCATTCAACTGGCTCGGTTTCATCAGTGCTATGATATC 1129 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1089 AATGGCTTCACTAACTGAGCTATCATTCAACTGGCTCGGTTTCATCAGTGCCATGATCTC 1148 Query 1130 AAACATTTCTTTCACTTACCGAAGCATCTTCTCCAAGAAAGCCATGACTGATATGGACAG 1189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1149 AAACATTTCTTTCACTTACCGAAGCATCTTCTCCAAGAAAGCCATGACTGATATGGACAG 1208 Query 1190 TACAAATGTCTACGCTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCAT 1249 ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1209 TACCAATGTCTACGCTTACATCTCCATTATCGCTCTCTTCGTCTGCATTCCTCCTGCCAT 1268 Query 1250 CATCGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGG 1309 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1269 CATCGTTGAAGGTCCTAAACTACTGAACCATGGTTTCGCCGACGCGATTGCTAAAGTCGG 1328 Query 1310 AATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCA 1369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1329 AATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTTACCATCTCTACAATCA 1388 Query 1370 GCTGGCTACCAATACCTTGGAGAGGGTTGCACCGCTGACTCACGCGGTTGGAAACGTTCT 1429 | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1389 GTTGGCTACTAATACCTTGGAGAGGGTCGCACCGCTGACTCACGCGGTTGGAAACGTTCT 1448 Query 1430 GAAACGTGTGTTCGTGATCGGTTTCTCCATCGTTATCTTCGGAAACAAGATATCGACACA 1489 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1449 GAAACGTGTGTTCGTGATCGGTTTCTCCATTGTTATCTTCGGAAACAAGATATCGACACA 1508 Query 1490 GACAGGTATAGGAACAGGAATAGCCATTGCTGGAGTTGCAATGTACTCTATCATTAAGGC 1549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1509 GACAGGTATAGGAACAGGAATAGCCATTGCTGGAGTTGCAATGTACTCTATCATTAAGGC 1568 Query 1550 CAAGATCGAAGAAGAGAAACGGGTCACAAGGAAAGAAAGCATAGAAAGC-A-GCTGAAGA 1607 |||||||||||||||||||||| || | ||||||||||| |||| ||| | | | |||| Sbjct 1569 CAAGATCGAAGAAGAGAAACGG--CA-A-GGAAAGAAAGCTTAGAGAGCGACG-T-AAGA 1622 Query 1608 CGGCGGTCGACAGTTGCATAAACAAGTTCTCCGATGGatatatatatatctatataataa 1667 ||||||||||| ||||||||||||||| |||||||| | |||||| | | ||||||||| Sbjct 1623 CGGCGGTCGACGGTTGCATAAACAAGTCCTCCGATG-A-ATATAT-T-T--ATATAATAA 1676 Query 1668 ataACCAAATGCAATAGTATGTTGTATTGTACCATCAACCATTGttttcgagtttttcct 1727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 ATAACCAAATGCAATAGTATGTTGTATTGTACCATCAACCATTGTTTTCGAGTTTTTCCT 1736 Query 1728 ttctttgttttttttttGCTTTCTGAAAAGTTATATATAAattttttattctgcttcttc 1787 |||||||||||||| ||||||||||||||||||||||| |||||||||||| || || Sbjct 1737 TTCTTTGTTTTTTT---GCTTTCTGAAAAGTTATATATAA-TTTTTTATTCTG-TT-TT- 1789 Query 1788 tctttttaatggagaacattttcatttccatttcttctGATATGCAATTATCTTAACGGA 1847 | |||||||||||||| |||||| ||| | |||||||||||||||| ||||| Sbjct 1790 T------AATGGAGAACATTTCCATTTC--TTT-T---GATATGCAATTATCTTGACGGA 1837 Query 1848 TAAAAGGCATAATAATGTATTTATTTGCTCTTTCTCTTGGAGCATATACCCATCATCGTG 1907 |||||||||||||||||||||||||||||||| | || ||||||||||| Sbjct 1838 TAAAAGGCATAATAATGTATTTATTTGCTCTT--------A---TA--CCCATCATCGT- 1883 Query 1908 ACGTAGAGCTTGAGGTTTAA-TTTAT-TTCT-TATAAC--ATT-TTT--CTCCTTGCTAA 1959 | | || || | ||||| ||||| || | ||||| ||| ||| ||| ||||||| Sbjct 1884 A-G-AG---TTAAATTTTAAATTTATCTT-TGTATAAAGTATTCTTTTGCTC-TTGCTAA 1936 Query 1960 TTTTGT-TTTTCAACTAGTAATTTGTTATATATTATTTTTGTAAT 2003 |||||| |||||| || |||||| |||||||||| |||||||||| Sbjct 1937 TTTTGTGTTTTCATCTGGTAATTGGTTATATATTGTTTTTGTAAT 1981 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76599482695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5