BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46170.1
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494357 jgi|Araly1|494357|fgenesh2_kg.8__173__AT5G46170.1 2435 0.0
Ahg946362 jgi|Araly1|946362|scaffold_702591.1 835 0.0
> Ahg494357 jgi|Araly1|494357|fgenesh2_kg.8__173__AT5G46170.1
Length=1644
Score = 2435 bits (1318), Expect = 0.0
Identities = 1569/1683 (93%), Gaps = 46/1683 (3%)
Strand=Plus/Plus
Query 13 TCTTCTCTCTAGAAACATCTTTCATGCGTTATCTTCTCCAAAAGCTCTGATTCTGATTCT 72
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTCTCTCTAGAAACATC-TTCATGCGTTATCTTCTCCAAAAGCTCTGATTCTGATTCT 59
Query 73 GAATCATCCTGaaaaaaaCCTAGAAAAATTCTATCCCACAAAATCTTCAAAGATCCATGG 132
||||||| || ||||||||| ||| | |||| ||||||||||||||
Sbjct 60 GAATCAT-CT-AAAAAAACC----------CTA---GA-AAAA---TCAAAGATCCATGG 100
Query 133 CCGTAATTATCCCTCGTTCAGATCCACCGTCACGAATCCA-TCCGGAACCACCACAAACC 191
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 101 CCGTAATTATCCCTCGTTCAGATCCACCGTCACGAATCCATTCC-GAACCACCACAAACC 159
Query 192 CTAGAAATCGACCATTTCGATCATCTTCCTGACTCAATCCTCCTCCTCGTTTTCAACAAA 251
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 160 CTAGAAATCGACCATTTCGATCGTCTGCCTGACTCAATCCTCCTCCTCGTTTTCAACAAA 219
Query 252 ATCGGCGACGTCAAAGCTCTCGGAAGATGCTGCGTCGTTTCCAGAAGATTCCATTCTCTC 311
||||| ||||| |||||||||||||||||||| ||||||||| | ||||| |||||||||
Sbjct 220 ATCGGTGACGTTAAAGCTCTCGGAAGATGCTGTGTCGTTTCCCGGAGATTTCATTCTCTC 279
Query 312 GTTCCTCAAGTCGATAACGTCGTTGTTCGTGTCGATTGCGTAATCTCCGACGACGATTCG 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GTTCCTCAAGTCGATAACGTCGTTGTTCGTGTCGATTGCGTAATCTCCGACGACGATTCG 339
Query 372 TCATCTTTGTCATCTATCAAATCTCGCTCCGGTTCTTCCGCTGGTTCGTTCTCGGCTATA 431
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 340 TCGTCTTTATCATCTATCAAATCTCGCTCCGGTTCTTCCGCTGGATCGTTCTCGGCTATA 399
Query 432 TTTCGTCTTGTTGTTGGTGGCATTGTTAAGCCGTTACAAGCTTTAGGTCAATTCCTTGGT 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 TTTCGTCTTGTTGTTGGTGGCATTGTTAAGCCGTTACAAGCTTTAGGTCAATTCCTTGGT 459
Query 492 ACGAAGAGATCATCATCATCATGTGGTGGTTCTGGATCTTCTTCTTCTTCGTTGTCTATT 551
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 460 ACGAAGAGATCATCAT------GTGGTGGTTCTGGATCTTCTTCTTC---GTTGTCTATT 510
Query 552 AGTGGAGATGATGATGGTGGAGAGATCGAACAAGGCGGTGTTACGCATCATTCACCTACT 611
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 511 AGTGGAGATGATGAAGGTGGAGAGATCGAACAAGGCGGTGTTACGCATCATTCTCCTACA 570
Query 612 CAGGTTTTGAAAAACTTCGATGAGATTCGTTACTTAAGAATTGAGCTTCCTAGTGGTGAA 671
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 571 CAGGTTTTGAAAAACTTCGATGAGATTCGTTACTTACGTATTGAGCTTCCTAGTGGTGAA 630
Query 672 TTAGGGATTGATGATGGAGTTTTGTTGAAATGGAGAGCTGAATTTGGTTCTACTCTTGAT 731
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 631 TTAGGGATTGATGATGGAGTTTTGTTGAAATGGAGAGCTGAATTTGGTTCAACTCTTGAT 690
Query 732 AATTGTGTGATTCTCGGTGCTTCTTCAGTGATTCCACCAAATCCAATGAGAGTTTCTCAA 791
|||||||||||||||||||||||||| ||||||| ||| ||||| |||||| ||||||||
Sbjct 691 AATTGTGTGATTCTCGGTGCTTCTTCGGTGATTCAACCGAATCCGATGAGAATTTCTCAA 750
Query 792 GCTTGTG-ATACTACTACAGTCGTTGAAGCTCCCGGTTCTGGCTCCGATGATAATGGGAG 850
|| ||| | |||| |||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct 751 GCC-GTGGACACTAGTACAGTCGTTGAAGCTTCCGGTTCCGGCTCTGATGATAATGGGAG 809
Query 851 TATACCGGAATCGTTTTACACAAACGGAGGTTTGAAATTGCGTGTTGTATGGACGATTAG 910
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 810 TATACCGGAATCGTTTTACACAAACGGAGGATTGAAATTGCGTGTTGTATGGACAATTAG 869
Query 911 CTCTTTGATTGCTGCATCAGCACGACATTACTTGTTACAACCGATAATCGCGGAGCATAA 970
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 870 CTCTTTGATTGCTGCATCAGCACGACATTACTTGTTACAGCCGATAATCGCGGAGCATAA 929
Query 971 GACGCTTGATAGTTTAGTGCTCACTGATTCAGATGGGCAAGGTGTGCTCTGTATGAACAG 1030
||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 930 GACACTTGATAGTTTAGTTCTCACTGATTCTGATGGGCAAGGTGTGCTTTGTATGAACAG 989
Query 1031 AGATCAGCTAGAAGAGCTTAGGGTGAAACCATTAGCAGCTTCATCGGCTTCGAAGAGGAC 1090
||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 990 AGAGCAGCTAGAAGAGCTAAGAGTGAAACCATTAGCAGCTTCATCCGCTTCGAAGAGGAC 1049
Query 1091 ACTTGTGCCTGCTCTGAATATGAGACTATGGTATGCTCCAACCTTGGAATTGCCTGATGG 1150
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1050 ACTTGTGCCTGCTTTGAATATGAGACTTTGGTATGCTCCAACCTTGGAATTGCCTGATGG 1109
Query 1151 AACTGTGTTAAAAGGTGCGACTTTGGTTGCGATAAGACCGAGTGAATCGAAAAAGGAAGT 1210
|||||||||||||||||||||||| || ||||||||||| || || || |||| ||||||
Sbjct 1110 AACTGTGTTAAAAGGTGCGACTTTAGTAGCGATAAGACCAAGCGAGTCTAAAAGGGAAGT 1169
Query 1211 GTCTGATATCTCTTGGGTGTCTTCGGCTTTTGAGGAGCCTTATGAGACGGCTGCTAAGAT 1270
|||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1170 GTCTGATATCTCTTGGGTATCTTCGGCTTTCGAGGAGCCTTATGAGACAGCTGCGAAGAT 1229
Query 1271 GCTGGTTAAAAGAAGGACTTACTGTCTTGAAATGAACTCGTTCTAGCTTG-AATGGTTTC 1329
||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1230 GCTGGTTAAGAGAAGGACTTACTGTCTTGAAATGAACTCGTTCTAGCTTGCAAAC-TTTC 1288
Query 1330 AGTCGGAATCTGAGAGAACTGGCAACCCTGTGGCGAATTCAGGAAATTACAATTAAAAGC 1389
||| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||||
Sbjct 1289 AGTTAAAATCTGAGAGAACTGGCAACCCGGTGGCGAATTCAGGATATTGCAATTAAAAGC 1348
Query 1390 ATATAATGGGGAGAAGCAGAGAATGAAATAAAATCGAAGTTTTGATGAATCAAGAAACAA 1449
|| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1349 CTAGAATGGGG-GAAGCAGAGAATGAAATAAAATCGAAGTTTTGATGAATCCAGAAACAA 1407
Query 1450 GTTTTGCTGCCTACTACTACTGCATCTGCTAGCTAGTTTTTTCATTGAAGCATATGCCTT 1509
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1408 GTTTTGCTGCCTACTAC--C-GCATCTGCTAGCTAGTTTTTTCATTGAAGCATATGCCTT 1464
Query 1510 TGCAGGATCTCGCAATCatatataata-tatatCAACAAATTACAGATATCATGTAAGAG 1568
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1465 TGCAGGATCTCGCAATCATATATA-TAATATATCAACAAATTACAGATATCATGTAAGAG 1523
Query 1569 tttttcttttcttttttctgtctttttcttctcctttgcttgctcttctctatttATGTG 1628
|||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 1524 TTTTTCTTATCTTTTTTCTGT-TCTT-CTTCTCCTTTGCTTGCTCTTCTCTATTTATGTG 1581
Query 1629 AATATTGTAGGTATT---GCTTATTCCCCTGTCATTATACAAGTTATTTAAGATTGTAGT 1685
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 AATATTGTAGGTATTATTGCTTATTCCCCTGTCATTATACAAGTTATTTAAGATTGTAGA 1641
Query 1686 TTT 1688
|||
Sbjct 1642 TTT 1644
> Ahg946362 jgi|Araly1|946362|scaffold_702591.1
Length=1205
Score = 835 bits (452), Expect = 0.0
Identities = 930/1149 (81%), Gaps = 79/1149 (7%)
Strand=Plus/Plus
Query 196 AAATCGACCATTTCGATCATCTTCCTGACTCAATCCTCCTCCTCGTTTTCAACAAAATCG 255
|||||||||| |||||||| || ||||||||||||||||||||| | |||||||| ||||
Sbjct 82 AAATCGACCACTTCGATCACCTCCCTGACTCAATCCTCCTCCTCATCTTCAACAACATCG 141
Query 256 GCGACGTCAAAG-CTCTCGGAAGATGCTGCGTCGTTTCCAGAAGATTCCA-TTCTCTCGT 313
|||| ||||||| || | || | |||| |||||| |||| ||||||||| |||| | |
Sbjct 142 GCGATGTCAAAGCCT-TAGGTCGTTGCTCCGTCGTCTCCAAAAGATTCCATTTCT-TAAT 199
Query 314 TCCTCAAGTCGATAACGTCGTTGTTCGTGTCGATTGCGTAATCTCCGACGACGATTCGTC 373
||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 200 CCCTCAAGTCGAGAATGTCGTCGTTCGTGTCGATTGCGTTATCTCCGACGACGATTCTTC 259
Query 374 ATCT-TTGTCAT-CTATCAAATCTCGCTCCGGTTCTTCCGCTGGT--T-CGTTCTCGGCT 428
||| | || | | || ||| |||| ||| | || |||||| | | | ||||| ||
Sbjct 260 CTCTCTCCTC-TCCGAT-AAACCTCGATCC-G-TC-GCCGCTGCTACTCCTTTCTCCGCC 314
Query 429 ATATTTCGTCTTGTTGTTGGTGGCATTGTTAAGCCGTTACAAGCTTTAGGTCAATTCCTT 488
|| |||| | | | | || | | ||||||||||||||||||| || || ||||||
Sbjct 315 AT-TTTC--C--G-T-CTCGT-G---T-TTAAGCCGTTACAAGCTTTGGGACAGTTCCTT 362
Query 489 GGTACG--AAGAGATCAT-CATCATCAT-GTGGTGGTTCTGGATCTTCTTCTTCTTCGTT 544
||| || | || | | || || | | || || ||||||| ||||||||||
Sbjct 363 -AAACGCTCAG-GTTC-TGCTTCTTC-TCCTTCAGGATC---ATCTTCTCCTTCTTCGTT 415
Query 545 GTCT-ATTAGTGGAGATGAT---GATGGTGGAGAGATCGAACAAGGCGGTGTTACGCATC 600
|| | |||||||| | || | |||| ||||||||| |||||||| ||||| |||||||
Sbjct 416 GT-TGATTAGTGGTGGTGGTGGAGATGATGGAGAGATTGAACAAGGAGGTGTGACGCATC 474
Query 601 ATTCACCTACTCAGGTTTTGAAAAACTTCGATGAGATTC-GTTACTTAAGAATTGAGCTT 659
|||| || ||||||||||||||||||||||||||||||| ||| ||| | || ||||||
Sbjct 475 ATTCTCCGACTCAGGTTTTGAAAAACTTCGATGAGATTCGGTTTCTT-CGTATCGAGCTT 533
Query 660 CCTAGTGGTGAATTAGGGATTGATGATGGAGTTTTGTTGAAATGGAGAGCTGAATTTGGT 719
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 534 CCTAGTGGTGAATTAGGGATTGATGATGGTGTTTTATTGAAATGGAGAGCTGAATTTGGT 593
Query 720 TCTACTCTTGATAATTGTGTGATTCTCGGTGCTTCTTCAGTGATTCCACCAAATCCAATG 779
||||||||||| ||||||||||||||||||||||| || |||||||| | | | |||
Sbjct 594 TCTACTCTTGAGAATTGTGTGATTCTCGGTGCTTCCTCTGTGATTCCGGC-GA-CGAATT 651
Query 780 AGAGTTTC-TCAAGCTTGTGATAC-TACTACAGTCGTTGAAGC-TCCCGGT-TCTGGCT- 834
| | | | || | | |||| | || | ||| | | || | | |||| | || |
Sbjct 652 CG-GATACTTC---CGT-TGAT-CTTAGT--AGTAG-T-AA-CAACGCGGTGGC-GG-TG 698
Query 835 -CCGATGATAATGGGAGTATACCGGAATCGTTTTACACAAACGGA-GGTTTGAA-ATTGC 891
| || |||||||| |||||||||||||||||||| ||||||||| || || || || |
Sbjct 699 GCGGAGGATAATGGAAGTATACCGGAATCGTTTTATACAAACGGAGGGCTT-AAGCTT-C 756
Query 892 GTGTTGTATGGACGATTAGCTCTTTGATTGCTGCATCAGC-ACGACATTACTTGTTACAA 950
||||||||||||| ||||||||||||||||||||||| || | ||||||||||||| ||
Sbjct 757 GTGTTGTATGGACAATTAGCTCTTTGATTGCTGCATCTGCTA-GACATTACTTGTTGCAG 815
Query 951 CCGATAATCGCGGAGCATAAGACGCTTGATAGTTTAGTGCTCACTGAT-TCAGATGGGCA 1009
||||| ||||| ||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 816 CCGATTATCGCAGAGCATAAGACGCTTGATAGTTTAGTGCTTACTGATGTT-GATGGGCA 874
Query 1010 AGGTGTGCTCTGTATGAACAGAGATCAGCTAGAAGAGCTT-AGGGTGAAACCATTAG-CA 1067
||| ||| | |||||||| ||||||||| | ||||| || |||||||||||||| | ||
Sbjct 875 AGGAGTGTTGTGTATGAATAGAGATCAGTTGGAAGAA-TTGAGGGTGAAACCATT-GTCA 932
Query 1068 GCTTCATCGGCTTCGAAGAGGACACTTGTGCCTGCTCTGAATATGAGACTATGGTATGCT 1127
||||| || ||||| |||||||| ||||| |||||| ||||||||||||| |||||||||
Sbjct 933 GCTTCTTCAGCTTCTAAGAGGACTCTTGTACCTGCTTTGAATATGAGACTTTGGTATGCT 992
Query 1128 CCAACCTTGGAATTGCCTGATGGAACTGTGTTAAAAGGTGCGACT-TTGGTTGCGATAAG 1186
|| || ||||||||||||||||| || ||||| ||||| || || ||| | ||||| ||
Sbjct 993 CCTACTTTGGAATTGCCTGATGGGACGGTGTTGAAAGGAGCTACGCTTG-TGGCGATTAG 1051
Query 1187 ACCGAGTGAATCGAAAAAGGAAGTGTCTGATATCTCTTGGGTGTCTTCGGCTTTTGAGGA 1246
|||||| || ||||| ||||| |||| |||| | |||||||| ||||| || ||||| ||
Sbjct 1052 ACCGAGCGAGTCGAAGAAGGAGGTGTGTGATGTGTCTTGGGTTTCTTCTGCGTTTGATGA 1111
Query 1247 GCCTTATGAGACGGCTGCTAAGATGCTGGTTAAAAGAAGGACTTACTGTCTTGAAATGAA 1306
| |||||| | |||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 1112 GTCTTATGGGGTAGCTGCTAAGATGTTGGTTAAGAGAAGGACTTATTGTCTTGAAATGAA 1171
Query 1307 CTCGTTCTA 1315
||||||||
Sbjct 1172 TTCGTTCTA 1180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63420257925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5